Experiment set1S423 for Erwinia tracheiphila SCR3
Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Group: in plantaMedia:
Culturing: Erwinia_SCR3_ML3
By: Milo on 04/14/2023
Specific Phenotypes
For 1 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more. | 1 |
| Tryptophan synthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamine degradation I | 1 | 1 | 1 |
| L-glutamate biosynthesis I | 2 | 2 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 1 | 1 |
| acridone alkaloid biosynthesis | 4 | 1 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 1 | 1 |
| 4-hydroxy-2(1H)-quinolone biosynthesis | 5 | 2 | 1 |
| L-tryptophan biosynthesis | 6 | 5 | 1 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 1 |
| L-citrulline biosynthesis | 8 | 6 | 1 |
| superpathway of quinolone and alkylquinolone biosynthesis | 10 | 2 | 1 |
| superpathway of L-citrulline metabolism | 12 | 8 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 12 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 17 | 1 |
| superpathway of chorismate metabolism | 59 | 50 | 1 |