Experiment set1S422 for Phocaeicola dorei CL03T12C01

Compare to:

Beta-Lactose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS12675 -8.8 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02980 -8.4 -10.0 N-acetyltransferase compare
ABI39_RS02880 -8.3 -11.4 glutamate 5-kinase compare
ABI39_RS07005 -8.2 -5.6 type II 3-dehydroquinate dehydratase compare
ABI39_RS21075 -8.1 -7.9 tryptophan synthase subunit alpha compare
ABI39_RS10495 -7.4 -8.8 prephenate dehydrogenase compare
ABI39_RS02870 -7.4 -10.1 acetylornithine carbamoyltransferase compare
ABI39_RS10510 -7.3 -11.2 prephenate dehydratase compare
ABI39_RS06055 -7.3 -8.7 phosphoribosylamine--glycine ligase compare
ABI39_RS07790 -7.2 -11.3 M20 family metallo-hydrolase compare
ABI39_RS16910 -7.1 -11.3 3-phosphoglycerate dehydrogenase compare
ABI39_RS02875 -7.1 -13.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10205 -6.8 -7.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS00405 -6.8 -16.0 phosphoribosylformylglycinamidine synthase compare
ABI39_RS04695 -6.7 -6.2 shikimate kinase compare
ABI39_RS12715 -6.6 -13.5 dihydroxy-acid dehydratase compare
ABI39_RS10435 -6.6 -12.7 cofactor-independent phosphoglycerate mutase compare
ABI39_RS11830 -6.6 -6.4 ATP phosphoribosyltransferase compare
ABI39_RS04685 -6.6 -7.1 acetylglutamate kinase compare
ABI39_RS00475 -6.5 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02315 -6.4 -9.8 IMP dehydrogenase compare
ABI39_RS02960 -6.3 -13.5 pyrroline-5-carboxylate reductase compare
ABI39_RS04245 -6.3 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS07095 -6.3 -21.7 argininosuccinate lyase compare
ABI39_RS10440 -6.3 -8.4 threonine synthase compare
ABI39_RS10505 -6.3 -13.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS21045 -6.3 -7.4 tryptophan synthase subunit beta compare
ABI39_RS10215 -6.2 -11.3 3-isopropylmalate dehydrogenase compare
ABI39_RS16905 -6.2 -12.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11835 -6.2 -8.5 histidinol dehydrogenase compare
ABI39_RS21050 -6.2 -7.7 anthranilate synthase component I family protein compare
ABI39_RS10260 -6.2 -11.5 adenylosuccinate synthase compare
ABI39_RS05175 -6.1 -6.4 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS12645 -6.1 -16.7 chorismate synthase compare
ABI39_RS10210 -6.1 -12.6 2-isopropylmalate synthase compare
ABI39_RS12735 -6.1 -9.8 ketol-acid reductoisomerase compare
ABI39_RS12720 -6.0 -16.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS02970 -5.9 -11.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS00770 -5.9 -13.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10430 -5.9 -16.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS21060 -5.9 -9.2 anthranilate phosphoribosyltransferase compare
ABI39_RS06670 -5.9 -14.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS11845 -5.9 -9.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02975 -5.8 -11.1 argininosuccinate synthase compare
ABI39_RS10195 -5.5 -13.1 2-isopropylmalate synthase compare
ABI39_RS11405 -5.5 -11.7 hypothetical protein compare
ABI39_RS10200 -5.5 -18.2 3-isopropylmalate dehydratase large subunit compare
ABI39_RS05660 -5.4 -11.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS21065 -5.4 -7.3 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12665 -5.3 -9.6 shikimate dehydrogenase compare
ABI39_RS12725 -5.3 -8.2 acetolactate synthase small subunit compare
ABI39_RS06675 -5.2 -8.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS19925 -5.1 -10.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS19930 -5.1 -6.1 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS01300 -5.1 -10.8 NADP-specific glutamate dehydrogenase compare
ABI39_RS11840 -5.0 -7.6 histidinol-phosphate transaminase compare
ABI39_RS10640 -4.9 -12.4 serine dehydratase subunit alpha family protein compare
ABI39_RS06250 -4.9 -18.0 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS09575 -4.9 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS20070 -4.8 -7.4 UDP-glucose 4-epimerase GalE compare
ABI39_RS19935 -4.8 -8.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS14030 -4.7 -5.6 MFS transporter compare
ABI39_RS10500 -4.6 -7.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS04230 -4.6 -6.3 RNA polymerase factor sigma-54 compare
ABI39_RS18745 -4.6 -7.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS01360 -4.6 -10.2 hypothetical protein compare
ABI39_RS19920 -4.5 -11.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS02500 -4.5 -9.4 pyridoxine 5'-phosphate synthase compare
ABI39_RS00205 -4.4 -4.3 phosphoglucosamine mutase compare
ABI39_RS17420 -4.3 -6.4 serine hydroxymethyltransferase compare
ABI39_RS19945 -4.3 -13.1 aspartate kinase compare
ABI39_RS04795 -4.3 -3.1 M28 family peptidase compare
ABI39_RS11655 -4.2 -2.9 MFS transporter compare
ABI39_RS02965 -4.2 -12.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12955 -4.2 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS04885 -4.2 -4.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10870 -4.1 -12.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS17140 -4.1 -4.0 AAA family ATPase compare
ABI39_RS08035 -4.0 -3.9 adenylosuccinate lyase compare
ABI39_RS10110 -3.9 -15.5 S9 family peptidase compare
ABI39_RS02755 -3.9 -3.8 glycosyltransferase compare
ABI39_RS17170 -3.9 -3.7 protein BatD compare
ABI39_RS04505 -3.9 -7.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04690 -3.7 -10.7 biosynthetic arginine decarboxylase compare
ABI39_RS09850 -3.7 -6.5 energy transducer TonB compare
ABI39_RS19950 -3.6 -4.3 diaminopimelate decarboxylase compare
ABI39_RS01415 -3.6 -3.5 branched-chain amino acid aminotransferase compare
ABI39_RS17160 -3.6 -3.5 VWA domain-containing protein compare
ABI39_RS19985 -3.5 -3.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS17950 -3.4 -3.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS06995 -3.3 -9.1 tetratricopeptide repeat protein compare
ABI39_RS15415 -3.3 -7.7 hypothetical protein compare
ABI39_RS19385 -3.2 -5.3 hypothetical protein compare
ABI39_RS08305 -3.1 -10.4 DUF4831 family protein compare
ABI39_RS14560 -3.1 -4.1 aspartate 1-decarboxylase compare
ABI39_RS14465 -3.1 -11.1 hypothetical protein compare
ABI39_RS16870 -3.0 -4.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS08195 -3.0 -7.4 hypothetical protein compare
ABI39_RS18330 -3.0 -13.0 PD40 domain-containing protein compare
ABI39_RS06010 -3.0 -8.9 polysaccharide deacetylase family protein compare
ABI39_RS04700 -2.9 -3.9 type I DNA topoisomerase compare
ABI39_RS17175 -2.9 -7.0 tetratricopeptide repeat protein compare
ABI39_RS09855 -2.8 -5.6 polyprenyl synthetase family protein compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS16695 -2.8 -8.9 carbon-nitrogen hydrolase compare
ABI39_RS13000 -2.8 -5.9 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS12755 -2.8 -4.2 SurA N-terminal domain-containing protein compare
ABI39_RS09845 -2.8 -2.7 (d)CMP kinase compare
ABI39_RS11650 -2.7 -10.3 galactokinase compare
ABI39_RS17945 -2.7 -14.3 glutamine synthetase III compare
ABI39_RS17315 -2.7 -12.7 alpha amylase C-terminal domain-containing protein compare
ABI39_RS05450 -2.7 -5.2 redox-regulated ATPase YchF compare
ABI39_RS07090 -2.7 -1.6 hypothetical protein compare
ABI39_RS21055 -2.7 -5.4 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS16875 -2.7 -4.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS13185 -2.6 -3.2 manganese efflux pump compare
ABI39_RS04145 -2.6 -3.3 transcription elongation factor GreA compare
ABI39_RS14230 -2.6 -14.6 alpha-amylase compare
ABI39_RS04860 -2.5 -3.3 HigA family addiction module antidote protein compare
ABI39_RS06115 -2.5 -9.5 phosphatase PAP2 family protein compare
ABI39_RS14225 -2.5 -9.5 glycosyltransferase compare
ABI39_RS02470 -2.4 -6.0 ATP-dependent DNA helicase RecG compare
ABI39_RS11940 -2.3 -13.2 saccharopine dehydrogenase family protein compare
ABI39_RS11670 -2.2 -3.3 molecular chaperone DnaJ compare
ABI39_RS17150 -2.2 -4.1 hypothetical protein compare
ABI39_RS10650 -2.2 -12.0 AraC family transcriptional regulator compare
ABI39_RS17195 -2.1 -10.6 hypothetical protein compare
ABI39_RS12780 -2.1 -4.2 type III pantothenate kinase compare
ABI39_RS20615 -2.1 -12.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS12565 -2.1 -5.8 hypothetical protein compare
ABI39_RS16885 -2.0 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS14220 -2.0 -9.3 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS18300 -2.0 -4.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS09685 -2.0 -2.9 hypothetical protein compare
ABI39_RS17755 -2.0 -4.7 thiazole synthase compare
ABI39_RS09195 -2.0 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS11875 -1.9 -6.6 OmpH family outer membrane protein compare
ABI39_RS15410 -1.9 -6.0 DUF4296 domain-containing protein compare
ABI39_RS14245 -1.9 -11.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS09285 -1.9 -3.5 hypothetical protein compare
ABI39_RS09230 -1.9 -3.3 hypothetical protein compare
ABI39_RS12560 -1.8 -8.5 GGGtGRT protein compare
ABI39_RS02745 -1.8 -6.5 DUF59 domain-containing protein compare
ABI39_RS00410 -1.8 -3.4 response regulator compare
ABI39_RS06380 -1.8 -7.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS17775 -1.8 -10.5 2-iminoacetate synthase ThiH compare
ABI39_RS00515 -1.7 -3.0 hypothetical protein compare
ABI39_RS17780 -1.7 -7.5 HesA/MoeB/ThiF family protein compare
ABI39_RS12945 -1.7 -3.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS13180 -1.7 -5.4 FAD:protein FMN transferase compare
ABI39_RS17730 -1.7 -9.2 carboxynorspermidine decarboxylase compare
ABI39_RS14265 -1.7 -6.0 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS14260 -1.6 -7.4 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14250 -1.6 -6.9 8-amino-7-oxononanoate synthase compare
ABI39_RS02985 -1.5 -3.9 arginine repressor compare
ABI39_RS11660 -1.5 -4.8 galactose mutarotase compare
ABI39_RS17750 -1.5 -5.4 thiamine phosphate synthase compare
ABI39_RS14255 -1.5 -5.9 DUF452 family protein compare
ABI39_RS12670 -1.5 -5.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS08850 -1.5 -5.0 toprim domain-containing protein compare
ABI39_RS06060 -1.5 -3.8 S9 family peptidase compare
ABI39_RS17745 -1.5 -2.7 sulfur carrier protein ThiS compare
ABI39_RS09515 -1.4 -4.5 nucleoside deaminase compare
ABI39_RS17640 -1.4 -4.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS14240 -1.4 -5.7 biotin synthase BioB compare
ABI39_RS16895 -1.4 -2.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS01325 -1.4 -8.0 phosphoenolpyruvate synthase compare
ABI39_RS04730 -1.4 -2.9 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS12770 -1.4 -2.1 hypothetical protein compare
ABI39_RS00090 -1.4 -3.9 HAMP domain-containing histidine kinase compare
ABI39_RS14235 -1.3 -3.9 hypothetical protein compare
ABI39_RS20965 -1.3 -2.7 SPOR domain-containing protein compare
ABI39_RS16880 -1.3 -3.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS19915 -1.3 -7.0 formyltetrahydrofolate deformylase compare
ABI39_RS04930 -1.3 -3.2 helix-turn-helix transcriptional regulator compare
ABI39_RS17795 -1.3 -6.7 thiamine phosphate synthase compare
ABI39_RS04970 -1.3 -4.3 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS18910 -1.2 -1.4 preprotein translocase subunit YajC compare
ABI39_RS02480 -1.2 -3.0 DJ-1/PfpI family protein compare
ABI39_RS16700 -1.2 -5.1 agmatine deiminase family protein compare
ABI39_RS17320 -1.2 -1.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS04280 -1.2 -4.9 DUF4292 domain-containing protein compare
ABI39_RS10085 -1.2 -3.6 enoyl-ACP reductase compare
ABI39_RS01730 -1.2 -5.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS09670 -1.1 -1.4 cardiolipin synthase compare
ABI39_RS20410 -1.1 -3.8 GDP-mannose 4,6-dehydratase compare
ABI39_RS11880 -1.1 -1.8 hypothetical protein compare
ABI39_RS00520 -1.1 -6.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS17765 -1.1 -3.1 hypothetical protein compare
ABI39_RS04745 -1.1 -1.7 hypothetical protein compare
ABI39_RS17770 -1.1 -2.6 flavodoxin family protein compare
ABI39_RS06050 -1.1 -3.0 hypothetical protein compare
ABI39_RS15320 -1.0 -7.1 PorT family protein compare
ABI39_RS18170 -1.0 -1.5 hypothetical protein compare
ABI39_RS01040 -1.0 -3.7 L-rhamnose mutarotase compare
ABI39_RS02140 -1.0 -2.5 TetR/AcrR family transcriptional regulator compare
ABI39_RS04285 -1.0 -5.0 tetratricopeptide repeat protein compare
ABI39_RS06925 -1.0 -7.9 glycosyltransferase compare
ABI39_RS20175 -1.0 -1.8 translation elongation factor 4 compare
ABI39_RS03880 -1.0 -7.8 PDZ domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Beta-Lactose across organisms