Experiment set1S421 for Phocaeicola dorei CL03T12C01

Compare to:

Beta-Lactose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02970 -8.0 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS21060 -8.0 -9.5 anthranilate phosphoribosyltransferase compare
ABI39_RS04695 -7.6 -7.4 shikimate kinase compare
ABI39_RS00405 -7.6 -19.1 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10495 -7.5 -9.0 prephenate dehydrogenase compare
ABI39_RS02875 -7.5 -11.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02880 -7.4 -11.2 glutamate 5-kinase compare
ABI39_RS04685 -7.2 -5.1 acetylglutamate kinase compare
ABI39_RS12665 -7.2 -5.0 shikimate dehydrogenase compare
ABI39_RS10260 -6.9 -12.5 adenylosuccinate synthase compare
ABI39_RS07790 -6.9 -7.8 M20 family metallo-hydrolase compare
ABI39_RS02315 -6.8 -8.1 IMP dehydrogenase compare
ABI39_RS07005 -6.8 -4.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS21075 -6.7 -9.2 tryptophan synthase subunit alpha compare
ABI39_RS11840 -6.6 -6.5 histidinol-phosphate transaminase compare
ABI39_RS05660 -6.6 -11.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS02980 -6.6 -11.4 N-acetyltransferase compare
ABI39_RS12720 -6.6 -15.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS12735 -6.5 -10.0 ketol-acid reductoisomerase compare
ABI39_RS07095 -6.5 -19.2 argininosuccinate lyase compare
ABI39_RS19935 -6.5 -9.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10435 -6.5 -13.1 cofactor-independent phosphoglycerate mutase compare
ABI39_RS11830 -6.4 -6.3 ATP phosphoribosyltransferase compare
ABI39_RS10430 -6.4 -17.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12645 -6.4 -15.5 chorismate synthase compare
ABI39_RS10440 -6.4 -9.7 threonine synthase compare
ABI39_RS10215 -6.3 -10.7 3-isopropylmalate dehydrogenase compare
ABI39_RS10200 -6.3 -18.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10195 -6.2 -12.6 2-isopropylmalate synthase compare
ABI39_RS10510 -6.2 -10.4 prephenate dehydratase compare
ABI39_RS21065 -6.2 -6.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02960 -5.9 -12.8 pyrroline-5-carboxylate reductase compare
ABI39_RS17420 -5.9 -9.6 serine hydroxymethyltransferase compare
ABI39_RS10205 -5.9 -4.9 3-isopropylmalate dehydratase small subunit compare
ABI39_RS12715 -5.9 -11.5 dihydroxy-acid dehydratase compare
ABI39_RS10210 -5.9 -11.7 2-isopropylmalate synthase compare
ABI39_RS06675 -5.9 -9.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS16910 -5.9 -11.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS11835 -5.8 -8.7 histidinol dehydrogenase compare
ABI39_RS02975 -5.7 -8.2 argininosuccinate synthase compare
ABI39_RS04795 -5.7 -3.9 M28 family peptidase compare
ABI39_RS02870 -5.7 -9.4 acetylornithine carbamoyltransferase compare
ABI39_RS00770 -5.6 -14.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20070 -5.6 -5.5 UDP-glucose 4-epimerase GalE compare
ABI39_RS10500 -5.6 -7.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12675 -5.6 -7.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS21050 -5.5 -7.7 anthranilate synthase component I family protein compare
ABI39_RS21045 -5.5 -8.4 tryptophan synthase subunit beta compare
ABI39_RS11845 -5.5 -10.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS16905 -5.4 -14.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS09575 -5.4 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS10640 -5.4 -13.6 serine dehydratase subunit alpha family protein compare
ABI39_RS06055 -5.3 -9.7 phosphoribosylamine--glycine ligase compare
ABI39_RS19925 -5.3 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS19930 -5.2 -8.4 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04230 -5.0 -4.9 RNA polymerase factor sigma-54 compare
ABI39_RS00475 -5.0 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19920 -5.0 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS10505 -4.9 -15.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06670 -4.9 -14.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS11405 -4.9 -11.8 hypothetical protein compare
ABI39_RS01300 -4.7 -12.9 NADP-specific glutamate dehydrogenase compare
ABI39_RS05175 -4.7 -6.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS08195 -4.7 -7.1 hypothetical protein compare
ABI39_RS00205 -4.7 -3.2 phosphoglucosamine mutase compare
ABI39_RS18745 -4.7 -6.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS12725 -4.6 -7.7 acetolactate synthase small subunit compare
ABI39_RS19985 -4.5 -4.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04505 -4.5 -8.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS14560 -4.4 -4.3 aspartate 1-decarboxylase compare
ABI39_RS09850 -4.3 -6.6 energy transducer TonB compare
ABI39_RS17950 -4.3 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS02755 -4.3 -3.0 glycosyltransferase compare
ABI39_RS10870 -4.2 -11.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS19950 -4.2 -2.9 diaminopimelate decarboxylase compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS02965 -4.2 -15.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06250 -4.2 -12.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS11655 -4.2 -2.9 MFS transporter compare
ABI39_RS12955 -4.1 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS19945 -4.1 -11.1 aspartate kinase compare
ABI39_RS02500 -4.1 -13.3 pyridoxine 5'-phosphate synthase compare
ABI39_RS21055 -4.1 -7.3 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS08035 -4.0 -3.9 adenylosuccinate lyase compare
ABI39_RS04245 -3.8 -3.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17170 -3.8 -3.7 protein BatD compare
ABI39_RS02470 -3.7 -6.6 ATP-dependent DNA helicase RecG compare
ABI39_RS08305 -3.7 -9.1 DUF4831 family protein compare
ABI39_RS14030 -3.6 -5.8 MFS transporter compare
ABI39_RS01360 -3.6 -9.0 hypothetical protein compare
ABI39_RS10110 -3.5 -12.2 S9 family peptidase compare
ABI39_RS06995 -3.5 -9.0 tetratricopeptide repeat protein compare
ABI39_RS04690 -3.5 -10.9 biosynthetic arginine decarboxylase compare
ABI39_RS15415 -3.5 -8.1 hypothetical protein compare
ABI39_RS16895 -3.5 -4.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS19385 -3.3 -5.0 hypothetical protein compare
ABI39_RS18330 -3.3 -10.0 PD40 domain-containing protein compare
ABI39_RS13000 -3.3 -6.6 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS17160 -3.3 -3.8 VWA domain-containing protein compare
ABI39_RS04700 -3.1 -3.7 type I DNA topoisomerase compare
ABI39_RS11650 -3.1 -9.4 galactokinase compare
ABI39_RS12755 -3.0 -4.0 SurA N-terminal domain-containing protein compare
ABI39_RS17315 -2.9 -13.0 alpha amylase C-terminal domain-containing protein compare
ABI39_RS17175 -2.9 -6.9 tetratricopeptide repeat protein compare
ABI39_RS16695 -2.9 -14.3 carbon-nitrogen hydrolase compare
ABI39_RS04885 -2.9 -5.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS12770 -2.8 -3.7 hypothetical protein compare
ABI39_RS14230 -2.8 -15.6 alpha-amylase compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS06010 -2.8 -11.1 polysaccharide deacetylase family protein compare
ABI39_RS09845 -2.7 -2.6 (d)CMP kinase compare
ABI39_RS04860 -2.7 -4.6 HigA family addiction module antidote protein compare
ABI39_RS17945 -2.7 -13.8 glutamine synthetase III compare
ABI39_RS16880 -2.7 -4.6 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS13180 -2.7 -6.6 FAD:protein FMN transferase compare
ABI39_RS14225 -2.7 -10.6 glycosyltransferase compare
ABI39_RS17140 -2.6 -3.9 AAA family ATPase compare
ABI39_RS07090 -2.6 -1.5 hypothetical protein compare
ABI39_RS09685 -2.6 -2.8 hypothetical protein compare
ABI39_RS14465 -2.5 -8.9 hypothetical protein compare
ABI39_RS16885 -2.4 -3.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS11875 -2.4 -7.1 OmpH family outer membrane protein compare
ABI39_RS18300 -2.4 -5.1 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS17195 -2.4 -11.9 hypothetical protein compare
ABI39_RS11940 -2.3 -14.7 saccharopine dehydrogenase family protein compare
ABI39_RS17320 -2.3 -3.0 YhcH/YjgK/YiaL family protein compare
ABI39_RS16875 -2.3 -3.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS10650 -2.2 -14.9 AraC family transcriptional regulator compare
ABI39_RS18910 -2.2 -1.9 preprotein translocase subunit YajC compare
ABI39_RS09285 -2.2 -3.9 hypothetical protein compare
ABI39_RS17150 -2.1 -4.3 hypothetical protein compare
ABI39_RS06115 -2.0 -8.8 phosphatase PAP2 family protein compare
ABI39_RS14220 -2.0 -11.0 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS12560 -2.0 -10.5 GGGtGRT protein compare
ABI39_RS15410 -2.0 -6.8 DUF4296 domain-containing protein compare
ABI39_RS11670 -2.0 -3.0 molecular chaperone DnaJ compare
ABI39_RS13185 -1.9 -2.8 manganese efflux pump compare
ABI39_RS16315 -1.9 -1.8 conjugative transposon protein TraK compare
ABI39_RS06380 -1.9 -6.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS17755 -1.9 -5.0 thiazole synthase compare
ABI39_RS02140 -1.9 -2.6 TetR/AcrR family transcriptional regulator compare
ABI39_RS17775 -1.9 -9.5 2-iminoacetate synthase ThiH compare
ABI39_RS17750 -1.9 -7.2 thiamine phosphate synthase compare
ABI39_RS09195 -1.9 -2.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS20615 -1.9 -10.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS11660 -1.8 -6.5 galactose mutarotase compare
ABI39_RS16870 -1.8 -3.6 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS04970 -1.8 -5.5 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS17780 -1.8 -9.4 HesA/MoeB/ThiF family protein compare
ABI39_RS05450 -1.7 -3.2 redox-regulated ATPase YchF compare
ABI39_RS00090 -1.7 -4.4 HAMP domain-containing histidine kinase compare
ABI39_RS09230 -1.7 -2.6 hypothetical protein compare
ABI39_RS17640 -1.7 -4.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS02745 -1.6 -8.0 DUF59 domain-containing protein compare
ABI39_RS14245 -1.6 -11.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS17730 -1.6 -8.6 carboxynorspermidine decarboxylase compare
ABI39_RS14240 -1.6 -5.4 biotin synthase BioB compare
ABI39_RS17205 -1.6 -3.0 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS12565 -1.6 -7.0 hypothetical protein compare
ABI39_RS09855 -1.6 -5.1 polyprenyl synthetase family protein compare
ABI39_RS04930 -1.6 -4.2 helix-turn-helix transcriptional regulator compare
ABI39_RS14260 -1.5 -8.4 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14250 -1.5 -7.6 8-amino-7-oxononanoate synthase compare
ABI39_RS09515 -1.5 -3.1 nucleoside deaminase compare
ABI39_RS12670 -1.5 -5.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS02985 -1.5 -3.9 arginine repressor compare
ABI39_RS12980 -1.5 -3.0 HAD family hydrolase compare
ABI39_RS01325 -1.5 -8.9 phosphoenolpyruvate synthase compare
ABI39_RS14265 -1.4 -6.5 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS20175 -1.4 -3.0 translation elongation factor 4 compare
ABI39_RS12420 -1.4 -4.9 OadG family protein compare
ABI39_RS08850 -1.4 -5.3 toprim domain-containing protein compare
ABI39_RS12945 -1.4 -2.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS17765 -1.4 -2.7 hypothetical protein compare
ABI39_RS16305 -1.4 -1.4 DUF4141 domain-containing protein compare
ABI39_RS19915 -1.4 -6.0 formyltetrahydrofolate deformylase compare
ABI39_RS16700 -1.4 -4.5 agmatine deiminase family protein compare
ABI39_RS07010 -1.3 -2.5 pyruvate kinase compare
ABI39_RS12780 -1.3 -3.5 type III pantothenate kinase compare
ABI39_RS06050 -1.3 -2.8 hypothetical protein compare
ABI39_RS17770 -1.3 -2.9 flavodoxin family protein compare
ABI39_RS04285 -1.2 -5.7 tetratricopeptide repeat protein compare
ABI39_RS06060 -1.2 -3.5 S9 family peptidase compare
ABI39_RS04280 -1.2 -2.9 DUF4292 domain-containing protein compare
ABI39_RS01650 -1.2 -6.2 methylmalonyl-CoA mutase small subunit compare
ABI39_RS15265 -1.2 -2.2 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS00520 -1.2 -7.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS04145 -1.2 -2.0 transcription elongation factor GreA compare
ABI39_RS00250 -1.1 -2.9 chloride channel protein compare
ABI39_RS17795 -1.1 -6.4 thiamine phosphate synthase compare
ABI39_RS03880 -1.1 -8.7 PDZ domain-containing protein compare
ABI39_RS15320 -1.1 -7.1 PorT family protein compare
ABI39_RS12425 -1.1 -7.5 acyl-CoA carboxylase subunit beta compare
ABI39_RS00515 -1.1 -2.8 hypothetical protein compare
ABI39_RS19485 -1.1 -2.1 hypothetical protein compare
ABI39_RS01730 -1.1 -5.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS05765 -1.1 -2.0 DUF4294 domain-containing protein compare
ABI39_RS01735 -1.1 -5.5 acyl-CoA dehydrogenase family protein compare
ABI39_RS14235 -1.1 -3.4 hypothetical protein compare
ABI39_RS14255 -1.1 -4.5 DUF452 family protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Beta-Lactose across organisms