Experiment set1S420 for Phocaeicola dorei CL03T12C01

Compare to:

Starch from potato carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -9.7 -6.7 acetylornithine carbamoyltransferase compare
ABI39_RS02975 -9.5 -9.3 argininosuccinate synthase compare
ABI39_RS19930 -9.4 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS07095 -9.2 -15.3 argininosuccinate lyase compare
ABI39_RS07790 -9.1 -8.9 M20 family metallo-hydrolase compare
ABI39_RS21065 -9.0 -6.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS04695 -8.5 -5.9 shikimate kinase compare
ABI39_RS21060 -8.3 -8.1 anthranilate phosphoribosyltransferase compare
ABI39_RS12645 -8.1 -11.1 chorismate synthase compare
ABI39_RS07005 -8.0 -5.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS16905 -7.9 -9.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02970 -7.9 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS19925 -7.9 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS04460 -7.7 -17.0 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS10510 -7.7 -9.1 prephenate dehydratase compare
ABI39_RS02980 -7.6 -8.3 N-acetyltransferase compare
ABI39_RS02880 -7.5 -11.0 glutamate 5-kinase compare
ABI39_RS21075 -7.5 -6.7 tryptophan synthase subunit alpha compare
ABI39_RS16910 -7.4 -10.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS04425 -7.3 -14.9 hypothetical protein compare
ABI39_RS10260 -7.3 -10.4 adenylosuccinate synthase compare
ABI39_RS11840 -7.2 -5.0 histidinol-phosphate transaminase compare
ABI39_RS21050 -7.2 -7.5 anthranilate synthase component I family protein compare
ABI39_RS10505 -7.1 -10.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12735 -7.1 -8.4 ketol-acid reductoisomerase compare
ABI39_RS10500 -7.0 -4.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS04455 -7.0 -20.5 TonB-dependent receptor compare
ABI39_RS12665 -7.0 -4.8 shikimate dehydrogenase compare
ABI39_RS00770 -6.9 -12.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10495 -6.9 -9.3 prephenate dehydrogenase compare
ABI39_RS12715 -6.8 -12.2 dihydroxy-acid dehydratase compare
ABI39_RS10440 -6.8 -7.8 threonine synthase compare
ABI39_RS02875 -6.8 -11.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10205 -6.7 -5.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS12720 -6.7 -13.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS19935 -6.6 -9.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10210 -6.5 -10.2 2-isopropylmalate synthase compare
ABI39_RS21045 -6.4 -6.3 tryptophan synthase subunit beta compare
ABI39_RS10430 -6.4 -12.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS11835 -6.3 -7.5 histidinol dehydrogenase compare
ABI39_RS10200 -6.3 -13.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS06675 -6.3 -9.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02315 -6.2 -9.5 IMP dehydrogenase compare
ABI39_RS02960 -6.2 -12.3 pyrroline-5-carboxylate reductase compare
ABI39_RS10195 -6.1 -6.4 2-isopropylmalate synthase compare
ABI39_RS06670 -6.1 -16.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS05660 -6.0 -11.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11845 -6.0 -9.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS01650 -5.9 -9.9 methylmalonyl-CoA mutase small subunit compare
ABI39_RS10215 -5.9 -9.1 3-isopropylmalate dehydrogenase compare
ABI39_RS02290 -5.8 -4.0 hypothetical protein compare
ABI39_RS12675 -5.7 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS04795 -5.6 -3.5 M28 family peptidase compare
ABI39_RS01360 -5.5 -8.5 hypothetical protein compare
ABI39_RS11830 -5.5 -6.6 ATP phosphoribosyltransferase compare
ABI39_RS00475 -5.4 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS06010 -5.3 -7.9 polysaccharide deacetylase family protein compare
ABI39_RS09575 -5.2 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS08195 -5.2 -5.9 hypothetical protein compare
ABI39_RS06055 -5.2 -8.9 phosphoribosylamine--glycine ligase compare
ABI39_RS14560 -5.1 -5.0 aspartate 1-decarboxylase compare
ABI39_RS04685 -5.0 -5.3 acetylglutamate kinase compare
ABI39_RS10435 -5.0 -8.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10110 -5.0 -13.9 S9 family peptidase compare
ABI39_RS00405 -4.9 -16.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS09685 -4.8 -3.3 hypothetical protein compare
ABI39_RS10640 -4.8 -11.3 serine dehydratase subunit alpha family protein compare
ABI39_RS01655 -4.8 -10.1 methylmalonyl-CoA mutase compare
ABI39_RS06995 -4.7 -8.2 tetratricopeptide repeat protein compare
ABI39_RS18330 -4.7 -11.8 PD40 domain-containing protein compare
ABI39_RS04430 -4.6 -12.5 glycoside hydrolase family 13 protein compare
ABI39_RS12770 -4.4 -3.0 hypothetical protein compare
ABI39_RS19985 -4.4 -3.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS18745 -4.3 -7.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS19920 -4.3 -7.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS06250 -4.3 -15.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17175 -4.3 -5.8 tetratricopeptide repeat protein compare
ABI39_RS08035 -4.2 -2.9 adenylosuccinate lyase compare
ABI39_RS02965 -4.2 -13.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS00205 -4.2 -4.1 phosphoglucosamine mutase compare
ABI39_RS02755 -4.2 -2.9 glycosyltransferase compare
ABI39_RS17640 -4.2 -4.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17170 -4.1 -2.8 protein BatD compare
ABI39_RS17950 -4.1 -2.8 Crp/Fnr family transcriptional regulator compare
ABI39_RS06380 -4.1 -8.7 GH3 auxin-responsive promoter family protein compare
ABI39_RS19950 -4.1 -2.8 diaminopimelate decarboxylase compare
ABI39_RS01415 -4.0 -2.8 branched-chain amino acid aminotransferase compare
ABI39_RS10870 -4.0 -13.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS15410 -4.0 -5.6 DUF4296 domain-containing protein compare
ABI39_RS04230 -4.0 -6.1 RNA polymerase factor sigma-54 compare
ABI39_RS12420 -4.0 -8.0 OadG family protein compare
ABI39_RS04690 -3.9 -9.3 biosynthetic arginine decarboxylase compare
ABI39_RS18910 -3.9 -2.4 preprotein translocase subunit YajC compare
ABI39_RS12725 -3.9 -4.1 acetolactate synthase small subunit compare
ABI39_RS08305 -3.9 -5.8 DUF4831 family protein compare
ABI39_RS14240 -3.8 -7.3 biotin synthase BioB compare
ABI39_RS17160 -3.8 -2.6 VWA domain-containing protein compare
ABI39_RS08850 -3.8 -6.4 toprim domain-containing protein compare
ABI39_RS12425 -3.7 -11.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS02500 -3.7 -10.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS04245 -3.7 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS07090 -3.7 -3.3 hypothetical protein compare
ABI39_RS17420 -3.6 -6.8 serine hydroxymethyltransferase compare
ABI39_RS11545 -3.6 -9.4 hypothetical protein compare
ABI39_RS15610 -3.6 -1.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS15320 -3.5 -13.3 PorT family protein compare
ABI39_RS17140 -3.5 -4.1 AAA family ATPase compare
ABI39_RS17150 -3.5 -4.8 hypothetical protein compare
ABI39_RS19945 -3.3 -9.0 aspartate kinase compare
ABI39_RS04885 -3.2 -4.8 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS05450 -3.2 -4.8 redox-regulated ATPase YchF compare
ABI39_RS12755 -3.2 -3.1 SurA N-terminal domain-containing protein compare
ABI39_RS20965 -3.1 -3.2 SPOR domain-containing protein compare
ABI39_RS04700 -3.1 -3.0 type I DNA topoisomerase compare
ABI39_RS09845 -3.1 -2.1 (d)CMP kinase compare
ABI39_RS09850 -3.0 -5.0 energy transducer TonB compare
ABI39_RS06920 -3.0 -8.1 glycosyltransferase compare
ABI39_RS09515 -3.0 -3.2 nucleoside deaminase compare
ABI39_RS12415 -3.0 -5.1 biotin/lipoyl-binding protein compare
ABI39_RS20930 -2.9 -11.4 tetratricopeptide repeat protein compare
ABI39_RS20355 -2.8 -15.2 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS12955 -2.8 -5.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS05765 -2.8 -3.4 DUF4294 domain-containing protein compare
ABI39_RS05175 -2.7 -7.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS14250 -2.7 -7.2 8-amino-7-oxononanoate synthase compare
ABI39_RS21055 -2.7 -4.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS19385 -2.7 -4.3 hypothetical protein compare
ABI39_RS00410 -2.7 -2.6 response regulator compare
ABI39_RS14260 -2.6 -11.8 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14265 -2.6 -5.8 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS14890 -2.6 -1.6 tRNA-Asp compare
ABI39_RS21350 -2.6 -1.8 aspartate--ammonia ligase compare
ABI39_RS15415 -2.6 -6.2 hypothetical protein compare
ABI39_RS09245 -2.6 -11.2 cardiolipin synthase compare
ABI39_RS07010 -2.6 -3.4 pyruvate kinase compare
ABI39_RS17195 -2.5 -8.5 hypothetical protein compare
ABI39_RS17945 -2.5 -10.7 glutamine synthetase III compare
ABI39_RS04280 -2.5 -4.2 DUF4292 domain-containing protein compare
ABI39_RS11655 -2.3 -4.4 MFS transporter compare
ABI39_RS01300 -2.3 -10.7 NADP-specific glutamate dehydrogenase compare
ABI39_RS14235 -2.3 -3.6 hypothetical protein compare
ABI39_RS04505 -2.3 -6.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04970 -2.2 -5.6 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS00090 -2.2 -5.0 HAMP domain-containing histidine kinase compare
ABI39_RS11940 -2.2 -10.7 saccharopine dehydrogenase family protein compare
ABI39_RS14245 -2.2 -10.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS03880 -2.2 -13.6 PDZ domain-containing protein compare
ABI39_RS16695 -2.1 -7.7 carbon-nitrogen hydrolase compare
ABI39_RS20410 -2.1 -6.2 GDP-mannose 4,6-dehydratase compare
ABI39_RS18740 -2.1 -5.5 ATP-binding protein compare
ABI39_RS04860 -2.1 -1.9 HigA family addiction module antidote protein compare
ABI39_RS03320 -2.1 -7.8 FecR domain-containing protein compare
ABI39_RS17130 -2.1 -1.5 HU family DNA-binding protein compare
ABI39_RS05280 -2.0 -14.3 S41 family peptidase compare
ABI39_RS14255 -2.0 -5.2 DUF452 family protein compare
ABI39_RS11405 -2.0 -7.5 hypothetical protein compare
ABI39_RS12980 -2.0 -2.7 HAD family hydrolase compare
ABI39_RS13185 -2.0 -1.6 manganese efflux pump compare
ABI39_RS09855 -1.9 -4.8 polyprenyl synthetase family protein compare
ABI39_RS16875 -1.9 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS12140 -1.9 -9.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
ABI39_RS11735 -1.9 -4.8 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS20405 -1.9 -4.2 GDP-L-fucose synthase compare
ABI39_RS02355 -1.9 -7.8 ABC transporter ATP-binding protein compare
ABI39_RS20615 -1.8 -7.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS13000 -1.8 -4.5 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS17745 -1.8 -2.0 sulfur carrier protein ThiS compare
ABI39_RS01725 -1.8 -4.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS13845 -1.8 -1.3 histone H1 compare
ABI39_RS04930 -1.8 -2.9 helix-turn-helix transcriptional regulator compare
ABI39_RS14510 -1.8 -3.1 3'-5' exonuclease compare
ABI39_RS12970 -1.8 -4.9 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS17730 -1.7 -7.9 carboxynorspermidine decarboxylase compare
ABI39_RS06925 -1.7 -9.3 glycosyltransferase compare
ABI39_RS16705 -1.7 -11.1 translocation/assembly module TamB compare
ABI39_RS17850 -1.7 -6.1 alpha-glucan family phosphorylase compare
ABI39_RS04285 -1.7 -7.5 tetratricopeptide repeat protein compare
ABI39_RS12430 -1.7 -1.4 methylmalonyl-CoA epimerase compare
ABI39_RS11550 -1.7 -10.2 hypothetical protein compare
ABI39_RS10650 -1.7 -8.8 AraC family transcriptional regulator compare
ABI39_RS09195 -1.6 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS20070 -1.6 -5.9 UDP-glucose 4-epimerase GalE compare
ABI39_RS14225 -1.6 -7.4 glycosyltransferase compare
ABI39_RS06990 -1.6 -10.2 DUF4369 domain-containing protein compare
ABI39_RS13150 -1.6 -7.6 S41 family peptidase compare
ABI39_RS12945 -1.6 -2.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS17775 -1.6 -6.3 2-iminoacetate synthase ThiH compare
ABI39_RS02470 -1.6 -3.7 ATP-dependent DNA helicase RecG compare
ABI39_RS13855 -1.6 -4.3 response regulator transcription factor compare
ABI39_RS17315 -1.6 -7.5 alpha amylase C-terminal domain-containing protein compare
ABI39_RS00210 -1.6 -3.1 DUF4827 domain-containing protein compare
ABI39_RS00520 -1.6 -6.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS06235 -1.6 -4.8 UDP-galactopyranose mutase compare
ABI39_RS13170 -1.6 -9.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS19020 -1.5 -11.0 response regulator compare
ABI39_RS00760 -1.5 -2.2 YjgP/YjgQ family permease compare
ABI39_RS17750 -1.5 -4.1 thiamine phosphate synthase compare
ABI39_RS22955 -1.5 -2.7 hypothetical protein compare
ABI39_RS17780 -1.5 -6.6 HesA/MoeB/ThiF family protein compare
ABI39_RS21185 -1.5 -8.5 ROK family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Starch across organisms