Experiment set1S42 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES pH 4

200 most important genes:

  gene name fitness t score description  
OKGIIK_12885 -2.9 -2.0 hypothetical protein compare
OKGIIK_00580 -2.2 -2.1 hypothetical protein compare
OKGIIK_09995 yajC -1.9 -1.3 preprotein translocase subunit YajC compare
OKGIIK_09310 -1.9 -2.5 DUF6587 domain-containing protein compare
OKGIIK_01445 -1.9 -1.6 hypothetical protein compare
OKGIIK_07755 yIH1 -1.7 -2.0 Thymidylate synthase compare
OKGIIK_16030 fabG -1.5 -4.1 3-oxoacyl-ACP reductase FabG compare
OKGIIK_14540 -1.5 -1.3 DUF2282 domain-containing protein compare
OKGIIK_03265 -1.5 -2.7 hypothetical protein compare
OKGIIK_12280 trpC -1.5 -2.7 indole-3-glycerol phosphate synthase TrpC compare
OKGIIK_14020 mnhG -1.4 -1.7 monovalent cation/H(+) antiporter subunit G compare
OKGIIK_16440 -1.4 -1.9 Cytochrome C compare
OKGIIK_01790 rluD -1.3 -3.5 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OKGIIK_09445 -1.3 -2.3 acetylornithine deacetylase compare
OKGIIK_01310 gcvH -1.3 -3.0 glycine cleavage system protein GcvH compare
OKGIIK_05210 -1.3 -1.7 HigA family addiction module antitoxin compare
OKGIIK_09230 -1.3 -0.9 RecBCD enzyme subunit RecB compare
OKGIIK_01305 gcvT -1.3 -1.7 glycine cleavage system aminomethyltransferase GcvT compare
OKGIIK_16075 -1.3 -1.2 Peptidase C13 compare
OKGIIK_14110 fabB -1.3 -2.8 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_05615 -1.2 -2.5 DUF6165 domain-containing protein compare
OKGIIK_01200 -1.2 -5.6 FkbM family methyltransferase compare
OKGIIK_15650 ftsN -1.2 -2.0 sporulation protein compare
OKGIIK_16045 -1.2 -3.1 Beta-ketoacyl-[acyl-carrier-protein] synthase II compare
OKGIIK_14345 nagA -1.2 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_01130 -1.1 -3.2 DUF4398 domain-containing protein compare
OKGIIK_01225 -1.1 -6.4 glycosyltransferase compare
OKGIIK_14795 -1.1 -2.1 Conjugal transfer protein TraR compare
OKGIIK_15805 -1.1 -3.3 Transcriptional regulator compare
OKGIIK_00280 -1.1 -2.2 Zeta-toxin domain-containing protein compare
OKGIIK_06085 merR -1.1 -2.2 Hg(II)-responsive transcriptional regulator compare
OKGIIK_13565 thrB -1.1 -1.4 homoserine kinase compare
OKGIIK_02935 -1.1 -1.8 hypothetical protein compare
OKGIIK_10895 -1.1 -3.1 Histidine kinase compare
OKGIIK_11735 rsmI -1.1 -1.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
OKGIIK_13560 thrA -1.1 -2.3 homoserine dehydrogenase compare
OKGIIK_16585 -1.1 -2.8 DUF1328 domain-containing protein compare
OKGIIK_00365 -1.1 -1.6 hypothetical protein compare
OKGIIK_02070 -1.1 -1.9 hypothetical protein compare
OKGIIK_08545 -1.0 -3.3 Acetoacetyl-CoA reductase compare
OKGIIK_09760 -1.0 -1.8 2-nitropropane dioxygenase compare
OKGIIK_03375 -1.0 -1.5 hypothetical protein compare
OKGIIK_16680 natA -1.0 -2.3 ABC transporter compare
OKGIIK_07040 smc -1.0 -1.2 chromosome segregation protein SMC compare
OKGIIK_11085 algH -1.0 -1.4 YqgE/AlgH family protein compare
OKGIIK_01205 -1.0 -7.6 Glycosyl transferases group 1 compare
OKGIIK_04710 -1.0 -4.4 hypothetical protein compare
OKGIIK_16040 -1.0 -4.3 Ketoacyl-synth-N domain-containing protein compare
OKGIIK_13445 -0.9 -4.5 Restriction endonuclease subunit S compare
OKGIIK_05950 roxA -0.9 -1.1 transcription factor compare
OKGIIK_11190 -0.9 -1.5 WGR domain-containing protein compare
OKGIIK_05695 -0.9 -2.3 Large ribosomal RNA subunit accumulation protein YceD compare
OKGIIK_11740 -0.9 -4.5 LppC putative lipoprotein compare
OKGIIK_10980 -0.9 -1.4 DUF4097 domain-containing protein compare
OKGIIK_03510 mmsB -0.9 -2.3 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase compare
OKGIIK_07320 dnaJ -0.9 -3.9 molecular chaperone DnaJ compare
OKGIIK_16550 ctaA -0.9 -5.4 heme A synthase compare
OKGIIK_03850 -0.9 -2.8 Glycine cleavage system transcriptional repressor compare
OKGIIK_05625 -0.9 -2.8 3-deoxy-D-manno-octulosonic acid kinase compare
OKGIIK_01185 -0.9 -4.6 Glycosyl transferase compare
OKGIIK_07305 -0.9 -4.0 2OG-FeII-Oxy-4 domain-containing protein compare
OKGIIK_10775 -0.9 -3.4 hypothetical protein compare
OKGIIK_03445 -0.9 -5.5 hypothetical protein compare
OKGIIK_04020 -0.9 -1.0 Large subunit ribosomal protein L19e compare
OKGIIK_13335 ubiK -0.9 -1.2 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_13440 -0.9 -4.3 type I restriction-modification system subunit M compare
OKGIIK_01125 -0.9 -2.5 DUF4398 domain-containing protein compare
OKGIIK_17020 -0.9 -4.4 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase compare
OKGIIK_16535 -0.9 -3.0 DUF2909 domain-containing protein compare
OKGIIK_16915 rfaB -0.9 -5.0 glycosyl transferase compare
OKGIIK_01235 -0.9 -4.9 Glycosyl transferases group 1 compare
OKGIIK_02640 -0.9 -1.3 Chemotaxis protein compare
OKGIIK_01065 -0.9 -6.2 S1/P1 Nuclease compare
OKGIIK_04350 dksA -0.9 -2.8 DksA/TraR family C4-type zinc finger protein compare
OKGIIK_11725 mraZ -0.9 -1.8 division/cell wall cluster transcriptional repressor MraZ compare
OKGIIK_01190 -0.8 -1.0 Transport permease protein compare
OKGIIK_07300 -0.8 -1.1 carbamoyl phosphate synthase small subunit compare
OKGIIK_16555 cyoE -0.8 -4.8 heme o synthase compare
OKGIIK_08775 -0.8 -1.1 hypothetical protein compare
OKGIIK_07125 -0.8 -1.2 Ancillary SecYEG translocon subunit compare
OKGIIK_13850 -0.8 -1.7 BTAD domain-containing protein compare
OKGIIK_09225 -0.8 -1.7 RecBCD enzyme subunit RecC compare
OKGIIK_14385 -0.8 -2.2 GTP cyclohydrolase 1 compare
OKGIIK_09040 -0.8 -2.1 Peptidase compare
OKGIIK_13725 mnmG -0.8 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
OKGIIK_03860 -0.8 -2.7 hypothetical protein compare
OKGIIK_07510 rnk -0.8 -1.6 nucleoside diphosphate kinase regulator compare
OKGIIK_16360 -0.8 -1.7 VanZ like family compare
OKGIIK_01220 -0.8 -4.9 Phosphomannomutase compare
OKGIIK_10590 ispE -0.8 -2.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
OKGIIK_10760 -0.8 -3.7 hypothetical protein compare
OKGIIK_04850 trpA -0.8 -1.6 tryptophan synthase subunit alpha compare
OKGIIK_03320 -0.8 -1.2 GNAT family N-acetyltransferase compare
OKGIIK_02520 -0.8 -1.5 hypothetical protein compare
OKGIIK_02690 flgJ -0.7 -1.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
OKGIIK_07430 secG -0.7 -2.1 preprotein translocase subunit SecG compare
OKGIIK_15780 glpG -0.7 -3.2 rhomboid family intramembrane serine protease compare
OKGIIK_00145 -0.7 -5.3 Peptidoglycan-binding protein compare
OKGIIK_13770 dprA -0.7 -1.2 DNA-processing protein DprA compare
OKGIIK_05630 elaC -0.7 -1.3 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_01195 -0.7 -1.4 ABC transporter, ATP-binding protein compare
OKGIIK_12320 -0.7 -3.3 AbiEi-3-N domain-containing protein compare
OKGIIK_01215 -0.7 -2.7 GDP-mannose 4,6 dehydratase compare
OKGIIK_14150 -0.7 -4.0 Alpha/beta hydrolase compare
OKGIIK_04620 -0.7 -2.5 hypothetical protein compare
OKGIIK_01175 rfbB -0.7 -3.4 dTDP-glucose 4,6-dehydratase compare
OKGIIK_01505 -0.7 -1.9 peroxiredoxin compare
OKGIIK_07240 flaA1 -0.7 -3.7 polysaccharide biosynthesis protein compare
OKGIIK_11100 -0.7 -3.3 hypothetical protein compare
OKGIIK_03140 -0.7 -1.2 Sec-independent protein translocase protein TatA compare
OKGIIK_16710 rlmK -0.7 -1.8 RlmI/RlmK family 23S rRNA methyltransferase compare
OKGIIK_00305 -0.7 -2.1 Phosphodiesterase compare
OKGIIK_04065 -0.7 -2.5 TetR family transcriptional regulator compare
OKGIIK_08730 -0.7 -0.7 hypothetical protein compare
OKGIIK_10540 tuf -0.7 -1.3 elongation factor Tu compare
OKGIIK_03330 citB -0.7 -0.9 DNA-binding response regulator compare
OKGIIK_16015 -0.7 -4.5 Acyltransferase compare
OKGIIK_03525 -0.7 -2.9 histone H1-like repetitive region-containing protein compare
OKGIIK_02325 -0.7 -2.0 AI-2E family transporter compare
OKGIIK_01265 -0.7 -4.2 Glycosyltransferase WbsX compare
OKGIIK_03580 -0.7 -4.2 EF-hand domain-containing protein compare
OKGIIK_06580 prpD -0.7 -1.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_07205 alkB -0.7 -1.4 DNA oxidative demethylase AlkB compare
OKGIIK_00275 -0.7 -1.1 Antitoxin compare
OKGIIK_01845 kup -0.7 -0.9 potassium uptake protein compare
OKGIIK_09370 fabG -0.7 -1.5 3-hydroxyacyl-CoA dehydrogenase compare
OKGIIK_16835 aroQ -0.7 -1.8 type II 3-dehydroquinate dehydratase compare
OKGIIK_06140 merD -0.7 -2.2 mercuric resistance transcriptional repressor protein MerD compare
OKGIIK_08940 -0.7 -1.0 DUF4224 domain-containing protein compare
OKGIIK_16260 -0.7 -1.4 General secretion pathway protein GspN compare
OKGIIK_08765 -0.7 -1.6 hypothetical protein compare
OKGIIK_16890 -0.7 -2.7 Nucleoside-diphosphate sugar epimerase compare
OKGIIK_00105 lipA -0.7 -2.5 lipoyl synthase compare
OKGIIK_02320 -0.7 -2.9 DUF2066 domain-containing protein compare
OKGIIK_00100 lipB -0.7 -2.5 lipoyl(octanoyl) transferase LipB compare
OKGIIK_07255 -0.7 -0.9 LapA-dom domain-containing protein compare
OKGIIK_11950 lolD -0.7 -1.9 ABC transporter ATP-binding protein compare
OKGIIK_14975 -0.7 -3.7 AI-2E family transporter compare
OKGIIK_06110 -0.7 -1.6 DUF2063 domain-containing protein compare
OKGIIK_10960 -0.7 -0.8 ABC transporter compare
OKGIIK_03460 egtD -0.7 -4.1 L-histidine N(alpha)-methyltransferase compare
OKGIIK_01170 rfbA -0.7 -2.8 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_13395 queF -0.7 -1.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
OKGIIK_09315 feoB -0.7 -4.8 ferrous iron transport protein B compare
OKGIIK_01560 -0.7 -0.8 HTH cro/C1-type domain-containing protein compare
OKGIIK_04800 rimL -0.6 -0.7 N-acetyltransferase compare
OKGIIK_11525 -0.6 -1.9 Transporter compare
OKGIIK_13860 dtd -0.6 -1.3 D-aminoacyl-tRNA deacylase compare
OKGIIK_13530 -0.6 -1.1 2-epi-5-epi-valiolone synthase compare
OKGIIK_08045 tig -0.6 -1.7 trigger factor compare
OKGIIK_15880 -0.6 -1.8 AlpA family transcriptional regulator compare
OKGIIK_15165 -0.6 -0.6 hypothetical protein compare
OKGIIK_03000 degQ -0.6 -2.7 peptidase S1 compare
OKGIIK_10625 -0.6 -2.9 Thioredoxin domain-containing protein compare
OKGIIK_11915 wecC -0.6 -3.6 Vi polysaccharide biosynthesis protein VipA/TviB compare
OKGIIK_04085 -0.6 -0.7 hypothetical protein compare
OKGIIK_11180 -0.6 -1.6 Shikimate kinase compare
OKGIIK_01155 cpsB -0.6 -1.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_02315 purM -0.6 -1.2 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_09430 argH -0.6 -1.8 argininosuccinate lyase compare
OKGIIK_01160 rfbD -0.6 -1.4 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_01240 -0.6 -1.4 EamA domain-containing protein compare
OKGIIK_09975 -0.6 -2.8 Aminoglycoside phosphotransferase compare
OKGIIK_13225 -0.6 -1.2 DUF1656 domain-containing protein compare
OKGIIK_15060 lrp -0.6 -2.0 AsnC family transcriptional regulator compare
OKGIIK_05070 -0.6 -2.2 Barnase inhibitor compare
OKGIIK_08870 -0.6 -1.6 hypothetical protein compare
OKGIIK_03065 yqjQ -0.6 -1.4 Short-chain dehydrogenase compare
OKGIIK_02260 raiA -0.6 -3.3 ribosomal subunit interface protein compare
OKGIIK_10125 glnD -0.6 -0.8 [protein-PII] uridylyltransferase compare
OKGIIK_11370 -0.6 -0.9 Hemin transporter compare
OKGIIK_02120 lysA -0.6 -3.4 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_06740 gcvP2 -0.6 -2.5 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_06890 clpA -0.6 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OKGIIK_01280 -0.6 -2.8 Glyco-trans-2-like domain-containing protein compare
OKGIIK_17060 -0.6 -1.7 hypothetical protein compare
OKGIIK_14615 -0.6 -0.9 Heavy metal transporter compare
OKGIIK_10765 -0.6 -4.1 HAD-IIIC family phosphatase compare
OKGIIK_14170 -0.6 -3.4 TolC family protein compare
OKGIIK_08010 -0.6 -2.6 Peptidylprolyl isomerase compare
OKGIIK_15355 -0.6 -4.9 RimK family alpha-L-glutamate ligase compare
OKGIIK_11075 gshB -0.6 -1.6 glutathione synthase compare
OKGIIK_08675 -0.6 -2.1 hypothetical protein compare
OKGIIK_01715 -0.6 -3.1 Histidine kinase compare
OKGIIK_01510 mET2 -0.6 -2.8 homoserine O-succinyltransferase compare
OKGIIK_01825 -0.6 -1.1 AB hydrolase-1 domain-containing protein compare
OKGIIK_11800 -0.6 -1.1 hypothetical protein compare
OKGIIK_02225 -0.6 -1.1 Conserved hypothetical integral membrane protein compare
OKGIIK_01800 clpB -0.6 -3.3 ATP-dependent chaperone ClpB compare
OKGIIK_05430 -0.6 -1.1 Biopolymer transporter ExbD compare
OKGIIK_01115 maiA -0.6 -2.3 maleylacetoacetate isomerase compare
OKGIIK_01245 -0.6 -4.6 hypothetical protein compare
OKGIIK_11140 -0.6 -1.8 YGGT family compare
OKGIIK_15765 -0.6 -1.5 hypothetical protein compare
OKGIIK_01595 -0.6 -0.5 Polyisoprenoid-binding protein compare
OKGIIK_04355 -0.6 -2.0 hypothetical protein compare
OKGIIK_15285 mnmE -0.6 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
OKGIIK_12065 -0.6 -4.0 Penicillin-binding protein 1A compare
OKGIIK_01210 gmd -0.6 -3.2 GDP-mannose 4,6-dehydratase compare
OKGIIK_13825 -0.6 -3.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in pH experiments