Experiment set1S42 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES pH 4

200 most detrimental genes:

  gene name fitness t score description  
OKGIIK_12135 mlaF +9.8 58.4 ABC transporter ATP-binding protein compare
OKGIIK_12125 mlaD +9.7 71.4 outer membrane lipid asymmetry maintenance protein MlaD compare
OKGIIK_12120 +9.7 47.7 Toluene tolerance protein compare
OKGIIK_12130 mlaE +9.6 38.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_12110 +9.4 72.8 ABC transporter compare
OKGIIK_09365 +6.1 50.4 Nickel/cobalt transporter regulator compare
OKGIIK_15610 +5.8 29.2 EH domain-containing protein compare
OKGIIK_11885 +3.5 32.5 FecR domain-containing protein compare
OKGIIK_02790 fliO +3.3 1.5 flagellar biosynthetic protein FliO compare
OKGIIK_02095 +3.3 25.5 Aldehyde oxidase compare
OKGIIK_02145 scw11 +3.1 25.6 benzoate transporter compare
OKGIIK_02100 +3.1 15.5 (2Fe-2S)-binding protein compare
OKGIIK_03875 pcnB +2.5 11.2 tRNA nucleotidyltransferase/poly(A) polymerase compare
OKGIIK_01465 +2.0 17.7 TonB-dependent receptor compare
OKGIIK_06755 rnr +1.9 15.5 ribonuclease R compare
OKGIIK_13745 +1.9 15.8 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_03885 panB +1.9 4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKGIIK_08115 surE +1.9 7.7 5'/3'-nucleotidase SurE compare
OKGIIK_03895 panD +1.8 4.6 aspartate 1-decarboxylase compare
OKGIIK_14295 +1.7 10.8 Lipid A 3-O-deacylase compare
OKGIIK_07405 rluA +1.6 10.8 23S rRNA pseudouridine(955/2504/2580) synthase compare
OKGIIK_03350 +1.6 12.6 ABC transporter compare
OKGIIK_11995 +1.6 8.9 efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_01075 +1.6 12.7 Energy transducer TonB compare
OKGIIK_03340 ccmA +1.5 6.4 ABC transporter ATP-binding protein compare
OKGIIK_09500 dksA +1.4 2.8 RNA polymerase-binding protein DksA compare
OKGIIK_03345 +1.4 9.0 ABC transporter permease compare
OKGIIK_11050 +1.4 11.1 Histidine kinase compare
OKGIIK_03770 +1.4 3.4 Peptidyl-prolyl cis-trans isomerase compare
OKGIIK_16895 nfnB +1.3 2.7 malonic semialdehyde reductase compare
OKGIIK_13750 purD +1.3 2.6 phosphoribosylamine--glycine ligase compare
OKGIIK_11990 acrB +1.3 11.4 acriflavine resistance protein B compare
OKGIIK_04915 +1.3 3.9 Ferric uptake regulation protein compare
OKGIIK_11235 pssA +1.3 3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_14055 +1.3 6.6 Sensor protein QseC compare
OKGIIK_03890 panC +1.2 3.2 pantoate--beta-alanine ligase compare
OKGIIK_16065 +1.2 8.3 hypothetical protein compare
OKGIIK_11390 pgpA +1.2 4.8 Phosphatidylglycerophosphatase A compare
OKGIIK_04120 +1.2 2.4 DNA-binding protein compare
OKGIIK_07410 +1.2 3.6 Ribonuclease E compare
OKGIIK_16480 +1.1 1.4 Phosphocholine transferase AnkX compare
OKGIIK_00995 +1.1 1.9 DUF2946 domain-containing protein compare
OKGIIK_06095 +1.1 2.3 (2Fe-2S)-binding protein compare
OKGIIK_10945 +1.1 6.6 Histidine kinase compare
OKGIIK_03530 +1.1 9.3 hypothetical protein compare
OKGIIK_12775 fabG +1.1 3.9 SDR family oxidoreductase compare
OKGIIK_07105 +1.1 2.3 Ribosomal-protein-serine acetyltransferase compare
OKGIIK_03785 phoR +1.1 2.9 phosphate regulon sensor histidine kinase PhoR compare
OKGIIK_02645 +1.0 2.9 Chemotaxis protein compare
OKGIIK_05955 tauE +1.0 5.8 sulfite exporter TauE/SafE family protein compare
OKGIIK_04940 yerC +1.0 2.0 TrpR , YerC/YecD compare
OKGIIK_00775 +1.0 2.4 MarR family transcriptional regulator compare
OKGIIK_08505 +1.0 3.5 Rick-17kDa-Anti domain-containing protein compare
OKGIIK_15585 paaJ +1.0 4.3 acetyl-CoA C-acetyltransferase compare
OKGIIK_05915 pilH +1.0 4.3 twitching motility response regulator PilH compare
OKGIIK_11130 pilT +1.0 6.5 twitching motility protein PilT compare
OKGIIK_14825 +1.0 2.1 SDR family NAD(P)-dependent oxidoreductase compare
OKGIIK_14640 +1.0 1.9 MerC mercury resistance protein compare
OKGIIK_06145 merE +1.0 1.4 broad-spectrum mercury transporter MerE compare
OKGIIK_11815 +1.0 2.5 GIY-YIG domain-containing protein compare
OKGIIK_15925 queD +0.9 2.1 6-carboxytetrahydropterin synthase QueD compare
OKGIIK_05650 ybaB +0.9 4.6 YbaB/EbfC family nucleoid-associated protein compare
OKGIIK_01650 +0.9 4.2 Ketoglutarate semialdehyde dehydrogenase compare
OKGIIK_11060 cheW +0.9 3.0 chemotaxis protein CheW compare
OKGIIK_12195 cydX +0.9 2.1 cytochrome bd-I oxidase subunit CydX compare
OKGIIK_00955 +0.9 4.6 Transcriptional regulator compare
OKGIIK_16475 +0.9 3.7 Lipopolysaccharide heptosyltransferase family protein compare
OKGIIK_03040 +0.9 2.3 hypothetical protein compare
OKGIIK_03295 +0.9 0.9 hypothetical protein compare
OKGIIK_08335 +0.8 1.8 Transposase IS116/IS110/IS902 family compare
OKGIIK_01295 cysD +0.8 5.6 sulfate adenylyltransferase subunit CysD compare
OKGIIK_01640 +0.8 2.2 Oxidoreductase compare
OKGIIK_07855 +0.8 1.2 Histidine kinase compare
OKGIIK_13910 +0.8 2.0 DNA-binding protein compare
OKGIIK_02295 +0.8 2.9 BolA family transcriptional regulator compare
OKGIIK_03865 +0.8 1.4 ferredoxin compare
OKGIIK_15580 +0.8 3.9 hypothetical protein compare
OKGIIK_02980 +0.8 3.3 ABC transporter ATP-binding protein compare
OKGIIK_01830 tACO1 +0.8 1.0 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_14860 ssuE +0.8 2.3 ACP phosphodiesterase compare
OKGIIK_06105 +0.8 1.8 UPF0276 protein CV_3513 compare
OKGIIK_12000 marR +0.8 5.0 MarR family transcriptional regulator compare
OKGIIK_10670 +0.8 3.0 hypothetical protein compare
OKGIIK_08510 +0.8 2.3 Glycine zipper 2TM domain-containing protein compare
OKGIIK_06725 rpoE +0.8 1.1 RNA polymerase subunit sigma-70 compare
OKGIIK_05960 +0.8 3.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
OKGIIK_13415 +0.7 1.9 SseB family protein compare
OKGIIK_00125 +0.7 1.7 hypothetical protein compare
OKGIIK_16300 +0.7 3.0 Cytochrome C compare
OKGIIK_11260 ybbJ +0.7 1.7 Membrane protein implicated in regulation of membrane protease activity compare
OKGIIK_05020 +0.7 1.2 NUDIX hydrolase compare
OKGIIK_13680 +0.7 1.7 Cell surface protein compare
OKGIIK_04905 +0.7 3.4 DNA-binding response regulator compare
OKGIIK_07150 acrR +0.7 4.9 DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA compare
OKGIIK_00725 +0.7 1.5 DUF6348 domain-containing protein compare
OKGIIK_10615 ppk2 +0.7 2.3 polyphosphate kinase 2 compare
OKGIIK_00510 +0.7 2.4 hypothetical protein compare
OKGIIK_08250 +0.7 2.4 Fe(2+)/Mn(2+) transporter pcl1 compare
OKGIIK_01710 ompR +0.7 3.7 two-component system response regulator compare
OKGIIK_03335 +0.7 5.0 Polyketide cyclase compare
OKGIIK_16815 +0.7 1.6 DUF3426 domain-containing protein compare
OKGIIK_14500 +0.7 3.4 Glycosyl transferase family 2 compare
OKGIIK_08500 +0.6 0.7 Cell wall hydrolase compare
OKGIIK_12515 +0.6 2.2 3-oxoacyl-ACP reductase compare
OKGIIK_03870 Glu_trna +0.6 1.1 tRNA-Glu compare
OKGIIK_01610 +0.6 2.6 Sulfurtransferase compare
OKGIIK_00855 +0.6 1.9 Cytochrome B compare
OKGIIK_05140 +0.6 2.1 DUF5329 domain-containing protein compare
OKGIIK_16365 +0.6 5.5 Sulfatase compare
OKGIIK_09820 +0.6 4.7 ABC-trans-aux domain-containing protein compare
OKGIIK_03480 msrB +0.6 2.8 peptide-methionine (R)-S-oxide reductase compare
OKGIIK_13835 +0.6 0.7 hypothetical protein compare
OKGIIK_01585 yceI +0.6 2.8 polyisoprenoid-binding protein compare
OKGIIK_09890 +0.6 5.3 peptidase M20 compare
OKGIIK_00965 +0.6 1.3 DUF302 domain-containing protein compare
OKGIIK_05980 cysG +0.6 2.3 siroheme synthase CysG compare
OKGIIK_05035 +0.6 2.1 anti-sigma factor compare
OKGIIK_15825 ampE +0.6 3.5 beta-lactamase induction protein compare
OKGIIK_16420 +0.6 2.2 hypothetical protein compare
OKGIIK_13050 gldG +0.6 1.3 ABC transporter compare
OKGIIK_04690 +0.6 3.0 DUF2147 domain-containing protein compare
OKGIIK_01320 +0.6 1.7 Protein TonB compare
OKGIIK_15605 parA +0.6 3.3 CMP-binding protein compare
OKGIIK_12710 +0.6 4.0 hypothetical protein compare
OKGIIK_12420 pdsR +0.6 1.6 proteobacterial dedicated sortase system response regulator compare
OKGIIK_13340 glnK +0.6 2.2 P-II family nitrogen regulator compare
OKGIIK_01950 tadA +0.6 1.8 nucleoside deaminase compare
OKGIIK_01140 aF2118 +0.6 4.5 cystathionine beta-synthase compare
OKGIIK_13180 eRG3 +0.6 3.5 Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily compare
OKGIIK_00665 +0.6 1.9 SPOR domain-containing protein compare
OKGIIK_10890 pTR2 +0.6 4.4 MFS transporter compare
OKGIIK_08180 yurZ +0.6 1.4 alkylhydroperoxidase compare
OKGIIK_07060 +0.6 1.3 hypothetical protein compare
OKGIIK_13885 eAL +0.5 2.9 phosphodiesterase compare
OKGIIK_10845 +0.5 1.6 Nudix family hydrolase compare
OKGIIK_04270 +0.5 2.0 alkyl hydroperoxide reductase compare
OKGIIK_15045 +0.5 1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_04240 +0.5 0.9 hypothetical protein compare
OKGIIK_09695 fghA +0.5 3.9 S-formylglutathione hydrolase compare
OKGIIK_13905 +0.5 1.5 Glutathione S-transferase compare
OKGIIK_02485 +0.5 2.6 ArsR family transcriptional regulator compare
OKGIIK_03385 hflC +0.5 2.2 SPFH domain / Band 7 family compare
OKGIIK_02770 +0.5 2.5 Flg-hook domain-containing protein compare
OKGIIK_00470 +0.5 1.0 Alanyl-tRNA synthetase compare
OKGIIK_08705 +0.5 0.7 hypothetical protein compare
OKGIIK_09700 +0.5 2.0 Oxidoreductase compare
OKGIIK_05310 narJ +0.5 2.0 nitrate reductase molybdenum cofactor assembly chaperone compare
OKGIIK_01300 +0.5 4.3 Multifunctional fusion protein compare
OKGIIK_12200 pepP +0.5 4.0 Xaa-Pro aminopeptidase compare
OKGIIK_04890 +0.5 4.2 Cytochrome-c peroxidase compare
OKGIIK_00150 +0.5 3.6 Periplasmic serine endoprotease DegP-like compare
OKGIIK_07655 ccoN +0.5 1.4 cytochrome-c oxidase, cbb3-type subunit I compare
OKGIIK_12900 ychJ +0.5 2.6 UPF0225 protein XHC_4340 compare
OKGIIK_15140 yhcF +0.5 2.5 GntR family transcriptional regulator compare
OKGIIK_14245 purR +0.5 2.8 LacI family transcriptional regulator compare
OKGIIK_04410 +0.5 1.2 hypothetical protein compare
OKGIIK_12670 +0.5 2.3 hypothetical protein compare
OKGIIK_06710 +0.5 2.6 Metal-dependent hydrolase compare
OKGIIK_11055 +0.5 3.3 chemotaxis protein compare
OKGIIK_01260 fixA +0.5 0.6 EtfB protein compare
OKGIIK_04930 +0.5 1.6 30S ribosomal protein THX compare
OKGIIK_16620 ccmA +0.5 2.2 ABC transporter compare
OKGIIK_16450 msrC +0.5 2.7 diguanylate cyclase compare
OKGIIK_07290 greA +0.5 2.1 transcription elongation factor GreA compare
OKGIIK_00515 +0.5 2.9 Phage tail protein compare
OKGIIK_02875 +0.5 0.7 Flg-hook domain-containing protein compare
OKGIIK_14470 +0.5 1.0 PAS domain-containing sensor histidine kinase compare
OKGIIK_16255 gspM +0.5 2.7 type II secretion system protein GspM compare
OKGIIK_07075 +0.5 1.5 hypothetical protein compare
OKGIIK_12495 +0.5 0.8 FadR family transcriptional regulator compare
OKGIIK_04765 greB +0.5 2.0 transcription elongation factor GreB compare
OKGIIK_13920 +0.5 2.7 RNA polymerase subunit sigma compare
OKGIIK_09830 pqiA +0.5 3.7 paraquat-inducible membrane protein A compare
OKGIIK_16390 +0.5 1.8 Epimerase compare
OKGIIK_16400 +0.5 3.6 Glycoside hydrolase family 17 compare
OKGIIK_10800 +0.5 3.2 VapC toxin family PIN domain ribonuclease compare
OKGIIK_16465 dcp +0.5 3.9 dipeptidyl carboxypeptidase II compare
OKGIIK_02780 fliM +0.5 1.7 flagellar motor switch protein FliM compare
OKGIIK_03695 +0.5 2.3 Histidine kinase compare
OKGIIK_05985 cysK +0.5 2.2 cysteine synthase A compare
OKGIIK_08975 +0.5 2.3 hypothetical protein compare
OKGIIK_13055 +0.5 1.5 hypothetical protein compare
OKGIIK_15245 +0.5 4.2 hypothetical protein compare
OKGIIK_01630 +0.5 2.6 D-amino-acid oxidase compare
OKGIIK_02370 atl1 +0.5 0.8 cysteine methyltransferase compare
OKGIIK_13980 Ile2_trna +0.5 1.0 tRNA-Ile2 compare
OKGIIK_13575 leuA +0.5 2.0 2-isopropylmalate synthase compare
OKGIIK_09440 argB +0.4 2.3 acetylglutamate kinase compare
OKGIIK_15330 +0.4 1.4 DUF484 domain-containing protein compare
OKGIIK_14220 +0.4 2.3 HGSNAT-cat domain-containing protein compare
OKGIIK_00485 +0.4 2.8 DUF885 domain-containing protein compare
OKGIIK_03970 +0.4 1.7 Cupin-2 domain-containing protein compare
OKGIIK_04920 +0.4 1.2 MerC mercury resistance protein compare
OKGIIK_10005 queA +0.4 1.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
OKGIIK_08365 adaA +0.4 1.9 Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains compare
OKGIIK_05900 aHP1 +0.4 2.7 peroxiredoxin compare
OKGIIK_08880 +0.4 0.9 hypothetical protein compare
OKGIIK_00530 +0.4 0.8 hypothetical protein compare
OKGIIK_09825 +0.4 2.9 Mammalian cell entry protein compare
OKGIIK_02900 +0.4 2.0 Chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in pH experiments