Experiment set1S418 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

200 most important genes:

  gene name fitness t score description  
LU632_RS23980 tatC -6.3 -4.4 Sec-independent protein translocase subunit TatC compare
LU632_RS08885 -5.8 -3.3 ABC transporter ATP-binding protein compare
LU632_RS15245 purE -5.7 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS08880 -5.4 -2.4 ABC transporter permease compare
LU632_RS16115 sdhC -5.2 -3.6 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS25495 -4.9 -1.1 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS21875 gpsA -4.9 -3.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS21235 mlaD -4.9 -4.7 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS24725 -4.7 -1.7 hypothetical protein compare
LU632_RS16110 sdhD -4.6 -3.2 succinate dehydrogenase membrane anchor subunit compare
LU632_RS17820 ndk -4.5 -1.7 nucleoside-diphosphate kinase compare
LU632_RS16120 -4.5 -15.4 citrate synthase compare
LU632_RS18045 -4.4 -1.0 hypothetical protein compare
LU632_RS21445 mreC -4.4 -1.4 rod shape-determining protein MreC compare
LU632_RS20900 argF -4.4 -3.1 ornithine carbamoyltransferase compare
LU632_RS09955 pyrD -4.4 -3.0 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS07865 purF -4.4 -3.0 amidophosphoribosyltransferase compare
LU632_RS08790 -4.4 -3.0 EpsG family protein compare
LU632_RS21360 degS -4.3 -8.3 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS21755 -4.3 -3.0 adenylosuccinate synthase compare
LU632_RS08785 -4.3 -2.9 glycosyltransferase family 2 protein compare
LU632_RS09475 mntR -4.3 -2.0 manganese-binding transcriptional regulator MntR compare
LU632_RS08950 hisG -4.2 -4.1 ATP phosphoribosyltransferase compare
LU632_RS22140 glnL -4.2 -5.0 nitrogen regulation protein NR(II) compare
LU632_RS19585 sthA -4.2 -4.1 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS02865 leuD -4.2 -5.0 3-isopropylmalate dehydratase small subunit compare
LU632_RS21245 mlaF -4.1 -2.9 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS17615 -4.1 -2.5 YejL family protein compare
LU632_RS04250 yiaK -4.1 -2.3 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS06615 ptsI -4.0 -2.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS19270 ftsX -4.0 -9.4 permease-like cell division protein FtsX compare
LU632_RS21240 mlaE -4.0 -2.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS07220 -4.0 -2.1 hypothetical protein compare
LU632_RS08815 -4.0 -2.4 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS05960 sdhE -3.9 -2.1 FAD assembly factor SdhE compare
LU632_RS03310 -3.9 -7.1 sucrose-6-phosphate hydrolase compare
LU632_RS02100 -3.9 -2.7 hemolysin family protein compare
LU632_RS16480 -3.9 -2.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS17420 -3.9 -0.9 phosphatidylinositol-specific phospholipase C domain-containing protein compare
LU632_RS16100 -3.8 -2.6 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS25020 -3.8 -0.8 hypothetical protein compare
LU632_RS03250 -3.8 -2.7 type III secretion system protein compare
LU632_RS04780 -3.7 -0.8 replication initiation protein compare
LU632_RS02870 leuC -3.7 -3.6 3-isopropylmalate dehydratase large subunit compare
LU632_RS02875 leuB -3.7 -3.6 3-isopropylmalate dehydrogenase compare
LU632_RS14735 -3.7 -4.5 glycine zipper 2TM domain-containing protein compare
LU632_RS22810 -3.7 -2.6 aspartate aminotransferase family protein compare
LU632_RS20695 bacA -3.7 -3.0 undecaprenyl-diphosphate phosphatase compare
LU632_RS16250 nagA -3.7 -5.1 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS20950 pyrB -3.7 -2.5 aspartate carbamoyltransferase compare
LU632_RS08805 -3.6 -3.6 phage tailspike protein compare
LU632_RS19770 -3.6 -7.4 amino acid ABC transporter substrate-binding protein compare
LU632_RS15425 rpoE -3.6 -5.0 RNA polymerase sigma factor RpoE compare
LU632_RS08930 hisH -3.6 -2.5 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS02750 carB -3.6 -2.5 carbamoyl-phosphate synthase large subunit compare
LU632_RS17975 purL -3.6 -2.5 phosphoribosylformylglycinamidine synthase compare
LU632_RS02910 rsmH -3.6 -5.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS08915 hisIE -3.6 -2.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS12325 -3.6 -1.8 H-NS histone family protein compare
LU632_RS16105 sdhA -3.5 -2.4 succinate dehydrogenase flavoprotein subunit compare
LU632_RS16880 -3.5 -0.8 DTW domain-containing protein compare
LU632_RS19775 -3.5 -7.4 amino acid ABC transporter permease compare
LU632_RS19275 ftsE -3.4 -3.0 cell division ATP-binding protein FtsE compare
LU632_RS21085 secG -3.4 -1.7 preprotein translocase subunit SecG compare
LU632_RS12500 pyrF -3.4 -2.4 orotidine-5'-phosphate decarboxylase compare
LU632_RS07995 nuoH -3.4 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS04270 ulaD -3.4 -5.0 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS04305 -3.4 -0.7 DNA primase compare
LU632_RS21230 mlaC -3.4 -4.6 phospholipid-binding protein MlaC compare
LU632_RS03305 -3.3 -7.6 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS16090 odhB -3.3 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS07300 mlaA -3.3 -5.4 phospholipid-binding lipoprotein MlaA compare
LU632_RS05130 -3.3 -0.7 TIGR03750 family conjugal transfer protein compare
LU632_RS09245 -3.2 -2.2 L,D-transpeptidase family protein compare
LU632_RS08820 -3.2 -2.2 lipopolysaccharide biosynthesis protein compare
LU632_RS01085 -3.2 -1.7 class I SAM-dependent methyltransferase compare
LU632_RS21225 mlaB -3.2 -3.6 lipid asymmetry maintenance protein MlaB compare
LU632_RS13085 dsbB -3.2 -4.1 disulfide bond formation protein DsbB compare
LU632_RS19615 argC -3.2 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS24260 trxA -3.2 -2.4 thioredoxin TrxA compare
LU632_RS19610 argB -3.2 -1.8 acetylglutamate kinase compare
LU632_RS08780 wzc -3.2 -2.2 tyrosine-protein kinase Wzc compare
LU632_RS19605 -3.2 -4.4 argininosuccinate synthase compare
LU632_RS05855 serA -3.2 -6.8 phosphoglycerate dehydrogenase compare
LU632_RS07975 nuoC -3.2 -4.9 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS04140 -3.2 -0.7 terminase family protein compare
LU632_RS02880 leuA -3.2 -6.5 2-isopropylmalate synthase compare
LU632_RS07775 aroC -3.2 -2.2 chorismate synthase compare
LU632_RS10625 -3.2 -1.2 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS10340 pyrC -3.2 -2.2 dihydroorotase compare
LU632_RS08775 -3.2 -2.2 protein tyrosine phosphatase compare
LU632_RS03890 -3.2 -0.7 hypothetical protein compare
LU632_RS14375 -3.1 -0.7 excisionase compare
LU632_RS22135 glnG -3.1 -2.2 nitrogen regulation protein NR(I) compare
LU632_RS07980 nuoE -3.1 -1.0 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS06610 crr -3.1 -1.7 PTS glucose transporter subunit IIA compare
LU632_RS08935 hisB -3.1 -2.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS03300 -3.1 -12.8 carbohydrate porin compare
LU632_RS23035 -3.1 -0.7 helix-turn-helix domain-containing protein compare
LU632_RS08275 purM -3.1 -2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS07970 -3.1 -4.7 NADH-quinone oxidoreductase subunit B compare
LU632_RS06040 lysA -3.1 -4.2 diaminopimelate decarboxylase compare
LU632_RS08940 hisC -3.1 -3.7 histidinol-phosphate transaminase compare
LU632_RS19930 rseP -3.1 -3.6 sigma E protease regulator RseP compare
LU632_RS10690 -3.0 -1.3 hypothetical protein compare
LU632_RS14835 plsX -3.0 -2.1 phosphate acyltransferase PlsX compare
LU632_RS15405 -3.0 -1.3 IS6 family transposase compare
LU632_RS21930 -3.0 -7.0 glycosyltransferase compare
LU632_RS10250 -3.0 -0.9 phospholipase D family protein compare
LU632_RS08920 hisF -3.0 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS07985 nuoF -3.0 -3.5 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS08770 -2.9 -2.0 polysaccharide export protein compare
LU632_RS02140 -2.9 -1.2 ribosome-associated protein compare
LU632_RS01015 purD -2.9 -2.0 phosphoribosylamine--glycine ligase compare
LU632_RS19600 argH -2.9 -5.2 argininosuccinate lyase compare
LU632_RS14010 ldcA -2.9 -2.0 muramoyltetrapeptide carboxypeptidase compare
LU632_RS08000 nuoI -2.9 -3.8 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS07965 -2.9 -3.1 NADH-quinone oxidoreductase subunit A compare
LU632_RS08025 nuoN -2.9 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS17805 rodZ -2.8 -0.9 cytoskeleton protein RodZ compare
LU632_RS04280 araD -2.8 -8.0 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS07860 cvpA -2.8 -3.6 colicin V production protein compare
LU632_RS17035 -2.8 -0.6 DinI family protein compare
LU632_RS24840 kup -2.8 -4.3 low affinity potassium transporter Kup compare
LU632_RS21345 -2.8 -9.7 cell division protein ZapE compare
LU632_RS08335 -2.8 -1.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS19780 -2.8 -5.9 amino acid ABC transporter permease compare
LU632_RS24270 gppA -2.8 -1.2 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS05475 -2.8 -2.5 YqgE/AlgH family protein compare
LU632_RS05025 -2.7 -0.6 TIGR03749 family integrating conjugative element protein compare
LU632_RS07990 nuoG -2.7 -5.2 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS08925 hisA -2.7 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS09795 aroA -2.7 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS24345 -2.7 -0.6 hypothetical protein compare
LU632_RS08795 -2.7 -5.8 glycosyltransferase compare
LU632_RS08280 upp -2.7 -1.3 uracil phosphoribosyltransferase compare
LU632_RS02755 carA -2.7 -6.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS18505 yajC -2.7 -0.6 preprotein translocase subunit YajC compare
LU632_RS08945 hisD -2.7 -3.6 histidinol dehydrogenase compare
LU632_RS15250 purK -2.7 -1.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS24405 -2.6 -7.6 branched-chain amino acid transaminase compare
LU632_RS08015 nuoL -2.6 -5.3 NADH-quinone oxidoreductase subunit L compare
LU632_RS12940 purU -2.6 -9.0 formyltetrahydrofolate deformylase compare
LU632_RS14745 -2.6 -0.8 IS5 family transposase compare
LU632_RS16835 mprA -2.6 -3.8 transcriptional repressor MprA compare
LU632_RS19815 gmhB -2.6 -1.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS08800 -2.6 -1.2 glycosyltransferase compare
LU632_RS17465 mepS -2.6 -10.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
LU632_RS19620 argE -2.6 -1.8 acetylornithine deacetylase compare
LU632_RS10785 tagH -2.6 -12.2 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS11085 -2.6 -2.4 hypothetical protein compare
LU632_RS20270 -2.5 -0.6 IS5 family transposase compare
LU632_RS21880 secB -2.5 -1.7 protein-export chaperone SecB compare
LU632_RS15830 -2.5 -0.8 Arm DNA-binding domain-containing protein compare
LU632_RS16415 tatE -2.5 -0.6 twin-arginine translocase subunit TatE compare
LU632_RS04260 -2.5 -6.0 MFS transporter compare
LU632_RS24250 wecA -2.5 -10.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS00695 -2.5 -0.5 fimbria/pilus periplasmic chaperone compare
LU632_RS13905 -2.5 -1.1 DUF6388 family protein compare
LU632_RS10790 tagF -2.5 -7.0 type VI secretion system-associated protein TagF compare
LU632_RS10185 -2.5 -0.7 tail fiber assembly protein compare
LU632_RS13375 -2.4 -0.8 transcriptional regulator compare
LU632_RS24205 rffM -2.4 -8.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS14580 hflD -2.4 -6.0 high frequency lysogenization protein HflD compare
LU632_RS02050 miaA -2.4 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS08020 nuoM -2.4 -3.3 NADH-quinone oxidoreductase subunit M compare
LU632_RS24300 -2.4 -1.4 transposase compare
LU632_RS18455 panE -2.4 -4.3 2-dehydropantoate 2-reductase compare
LU632_RS14240 -2.4 -2.8 phage antirepressor KilAC domain-containing protein compare
LU632_RS15905 galT -2.4 -2.9 galactose-1-phosphate uridylyltransferase compare
LU632_RS21955 -2.4 -0.9 glycosyltransferase family 4 protein compare
LU632_RS16095 sucA -2.4 -1.6 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS14845 yceD -2.3 -0.7 23S rRNA accumulation protein YceD compare
LU632_RS06210 argA -2.3 -1.6 amino-acid N-acetyltransferase compare
LU632_RS24225 rffA -2.3 -10.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
LU632_RS04265 -2.3 -9.1 carbohydrate kinase compare
LU632_RS15445 tyrA -2.2 -6.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS14855 rluC -2.2 -3.4 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
LU632_RS22015 pyrE -2.2 -1.5 orotate phosphoribosyltransferase compare
LU632_RS02590 gpmB -2.2 -2.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
LU632_RS06410 -2.2 -1.0 phosphoadenylyl-sulfate reductase compare
LU632_RS19785 -2.2 -4.0 amino acid ABC transporter ATP-binding protein compare
LU632_RS18700 -2.2 -1.8 HI1506-related protein compare
LU632_RS12910 -2.2 -1.5 NAD-dependent epimerase compare
LU632_RS19960 -2.2 -0.8 hypothetical protein compare
LU632_RS02450 -2.2 -0.6 hypothetical protein compare
LU632_RS06735 -2.1 -5.9 DUF1176 domain-containing protein compare
LU632_RS08010 nuoK -2.1 -2.1 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS07905 -2.1 -0.8 IS91 family transposase compare
LU632_RS13950 ychF -2.1 -1.3 redox-regulated ATPase YchF compare
LU632_RS19100 -2.1 -0.9 hypothetical protein compare
LU632_RS08005 nuoJ -2.1 -2.5 NADH-quinone oxidoreductase subunit J compare
LU632_RS18995 proC -2.1 -2.5 pyrroline-5-carboxylate reductase compare
LU632_RS16990 bamE -2.1 -1.4 outer membrane protein assembly factor BamE compare
LU632_RS21260 kdsC -2.1 -3.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
LU632_RS02615 thrB -2.1 -1.4 homoserine kinase compare
LU632_RS02555 nadR -2.1 -5.9 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
LU632_RS04275 -2.1 -4.1 L-ribulose-5-phosphate 3-epimerase compare
LU632_RS21365 mdh -2.1 -4.0 malate dehydrogenase compare
LU632_RS04065 -2.1 -1.6 AlpA family phage regulatory protein compare


Specific Phenotypes

For 2 genes in this experiment