Experiment set1S418 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

200 most detrimental genes:

  gene name fitness t score description  
LU632_RS20620 cpdA +10.2 40.3 3',5'-cyclic-AMP phosphodiesterase compare
LU632_RS08765 wbaP +6.6 24.9 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
LU632_RS08825 galF +5.3 12.3 UTP--glucose-1-phosphate uridylyltransferase GalF compare
LU632_RS03200 +4.3 11.1 sigma-54 dependent transcriptional regulator compare
LU632_RS03185 +4.1 4.4 sigma-70 family RNA polymerase sigma factor compare
LU632_RS20625 +3.8 3.9 DUF1249 family protein compare
LU632_RS03330 +3.8 17.4 LacI family DNA-binding transcriptional regulator compare
LU632_RS13255 proQ +3.7 5.7 RNA chaperone ProQ compare
LU632_RS19580 fabR +3.6 5.4 HTH-type transcriptional repressor FabR compare
LU632_RS20090 pcnB +3.6 6.6 polynucleotide adenylyltransferase PcnB compare
LU632_RS13210 cspE +3.2 5.5 transcription antiterminator/RNA stability regulator CspE compare
LU632_RS08830 galE +3.0 15.5 UDP-glucose 4-epimerase GalE compare
LU632_RS09155 +3.0 6.3 ATP-binding cassette domain-containing protein compare
LU632_RS00115 +2.8 5.8 acyltransferase compare
LU632_RS10990 +2.7 10.3 sensor domain-containing phosphodiesterase compare
LU632_RS10180 +2.7 3.5 autoinducer synthase compare
LU632_RS03325 +2.7 7.9 hypothetical protein compare
LU632_RS03195 +2.6 9.9 response regulator transcription factor compare
LU632_RS22715 fkpA +2.6 6.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LU632_RS21515 fis +2.6 5.7 DNA-binding transcriptional regulator Fis compare
LU632_RS22365 pgi +2.4 8.6 glucose-6-phosphate isomerase compare
LU632_RS22245 +2.4 9.4 hypothetical protein compare
LU632_RS21350 +2.4 10.5 DUF1043 family protein compare
LU632_RS03190 +2.4 8.8 PAS domain-containing sensor histidine kinase compare
LU632_RS03815 +2.4 3.6 type VI secretion system tube protein Hcp compare
LU632_RS23970 rfaH +2.4 7.2 transcription/translation regulatory transformer protein RfaH compare
LU632_RS10450 +2.3 5.1 LysR family transcriptional regulator compare
LU632_RS11450 +2.3 5.3 hypothetical protein compare
LU632_RS18430 +2.2 7.3 LysR substrate-binding domain-containing protein compare
LU632_RS06480 rpoS +2.2 12.7 RNA polymerase sigma factor RpoS compare
LU632_RS26090 +2.2 3.1 DUF2514 domain-containing protein compare
LU632_RS12305 +2.2 10.7 ROK family transcriptional regulator compare
LU632_RS08540 +2.0 1.8 hypothetical protein compare
LU632_RS03345 +2.0 3.5 iron ABC transporter substrate-binding protein compare
LU632_RS21510 dusB +2.0 6.5 tRNA dihydrouridine synthase DusB compare
LU632_RS25030 +1.9 1.8 hypothetical protein compare
LU632_RS21120 +1.9 2.3 tyrosine-type recombinase/integrase compare
LU632_RS17070 +1.9 2.0 tail fiber assembly protein compare
LU632_RS10510 rcsA +1.8 2.0 transcriptional regulator RcsA compare
LU632_RS19705 glpK +1.8 3.8 glycerol kinase GlpK compare
LU632_RS18425 +1.8 2.6 YqcI/YcgG family protein compare
LU632_RS06085 +1.8 2.0 YgdI/YgdR family lipoprotein compare
LU632_RS22270 +1.8 2.7 hypothetical protein compare
LU632_RS02490 +1.8 2.7 DUF1328 domain-containing protein compare
LU632_RS08585 +1.8 1.8 hydroxyethylthiazole kinase compare
LU632_RS01070 +1.8 6.6 endonuclease/exonuclease/phosphatase family protein compare
LU632_RS06110 ptsP +1.7 7.7 phosphoenolpyruvate--protein phosphotransferase compare
LU632_RS21805 +1.7 3.0 IS91 family transposase compare
LU632_RS01525 +1.7 1.5 hypothetical protein compare
LU632_RS16680 +1.7 1.6 hypothetical protein compare
LU632_RS22340 psiE +1.7 3.7 phosphate-starvation-inducible protein PsiE compare
LU632_RS21710 rplI +1.7 2.2 50S ribosomal protein L9 compare
LU632_RS03295 +1.7 5.8 aminoimidazole riboside kinase compare
LU632_RS09030 +1.7 1.4 hypothetical protein compare
LU632_RS18450 +1.7 4.0 YajQ family cyclic di-GMP-binding protein compare
LU632_RS12710 +1.6 1.1 DUF2498 family protein compare
LU632_RS25570 +1.6 2.5 ribbon-helix-helix domain-containing protein compare
LU632_RS04805 +1.6 1.9 hypothetical protein compare
LU632_RS25045 +1.6 2.5 hypothetical protein compare
LU632_RS13480 cutC +1.6 4.5 copper homeostasis protein CutC compare
LU632_RS16370 rlmH +1.6 2.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LU632_RS12740 +1.6 6.5 glycosyltransferase compare
LU632_RS14325 +1.6 2.4 ERF family protein compare
LU632_RS15885 +1.6 1.9 hypothetical protein compare
LU632_RS21625 +1.5 1.8 IS6 family transposase compare
LU632_RS21300 npr +1.5 3.7 PTS phosphocarrier protein NPr compare
LU632_RS06465 surE +1.5 2.7 5'/3'-nucleotidase SurE compare
LU632_RS06530 +1.5 6.7 NupC/NupG family nucleoside CNT transporter compare
LU632_RS06985 +1.5 1.3 hypothetical protein compare
LU632_RS20790 +1.5 1.2 tyrosine-type recombinase/integrase compare
LU632_RS02465 +1.5 0.9 IS256 family transposase compare
LU632_RS05485 rsmE +1.5 4.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LU632_RS16255 +1.5 8.9 ROK family transcriptional regulator compare
LU632_RS08970 +1.5 2.6 ATP-binding cassette domain-containing protein compare
LU632_RS26080 +1.5 3.9 site-specific integrase compare
LU632_RS12435 +1.5 3.5 LysR family transcriptional regulator compare
LU632_RS01430 +1.5 1.1 hypothetical protein compare
LU632_RS18970 +1.4 0.9 YaiA family protein compare
LU632_RS16850 +1.4 2.9 MFS transporter compare
LU632_RS12310 +1.4 1.1 hypothetical protein compare
LU632_RS18400 +1.4 1.1 MFS transporter compare
LU632_RS21410 +1.4 1.5 p-hydroxybenzoic acid efflux pump operon protein AaeX compare
LU632_RS05325 +1.4 2.0 hypothetical protein compare
LU632_RS04330 tssE +1.4 3.3 type VI secretion system baseplate subunit TssE compare
LU632_RS09460 dps +1.4 2.6 DNA starvation/stationary phase protection protein Dps compare
LU632_RS23625 +1.4 1.7 IS91 family transposase compare
LU632_RS03770 +1.4 5.1 hypothetical protein compare
LU632_RS01170 crl +1.4 5.5 sigma factor-binding protein Crl compare
LU632_RS20590 +1.4 0.9 antibiotic biosynthesis monooxygenase compare
LU632_RS11795 +1.4 3.2 phage tail tape measure protein compare
LU632_RS05395 +1.4 2.0 TetR/AcrR family transcriptional regulator compare
LU632_RS15080 +1.4 2.9 antitermination protein Q compare
LU632_RS25465 +1.4 2.6 hypothetical protein compare
LU632_RS10005 matP +1.4 3.5 macrodomain Ter protein MatP compare
LU632_RS22790 +1.4 4.6 phosphoribulokinase compare
LU632_RS06885 +1.4 1.6 Phage antitermination protein q compare
LU632_RS01360 +1.3 3.0 YhgN family NAAT transporter compare
LU632_RS26070 +1.3 6.3 phage terminase large subunit compare
LU632_RS05900 +1.3 1.8 hypothetical protein compare
LU632_RS10170 +1.3 1.9 autoinducer binding domain-containing protein compare
LU632_RS17485 +1.3 1.0 hypothetical protein compare
LU632_RS01605 +1.3 2.2 head completion/stabilization protein compare
LU632_RS07525 +1.3 1.9 tail protein X compare
LU632_RS21055 rbfA +1.3 1.2 30S ribosome-binding factor RbfA compare
LU632_RS20185 +1.3 1.9 YhcH/YjgK/YiaL family protein compare
LU632_RS23025 +1.3 2.0 transposase domain-containing protein compare
LU632_RS03115 +1.3 1.4 hypothetical protein compare
LU632_RS09685 artP +1.3 3.5 arginine ABC transporter ATP-binding protein ArtP compare
LU632_RS19745 +1.3 1.5 glutathione S-transferase N-terminal domain-containing protein compare
LU632_RS07125 +1.3 1.6 scaffolding protein compare
LU632_RS16645 +1.3 1.5 hypothetical protein compare
LU632_RS07650 +1.3 2.1 hypothetical protein compare
LU632_RS23090 +1.3 2.0 disulfide bond formation protein B compare
LU632_RS26145 +1.3 3.5 hypothetical protein compare
LU632_RS06150 +1.2 4.2 TauD/TfdA family dioxygenase compare
LU632_RS19185 +1.2 1.8 IS256 family transposase compare
LU632_RS00825 +1.2 3.8 ROK family protein compare
LU632_RS21750 rnr +1.2 5.7 ribonuclease R compare
LU632_RS00050 +1.2 2.9 hypothetical protein compare
LU632_RS11100 +1.2 1.0 integrase core domain-containing protein compare
LU632_RS03840 tagH +1.2 4.9 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS07515 +1.2 3.1 phage baseplate assembly protein V compare
LU632_RS07885 yfcF +1.2 2.2 glutathione transferase compare
LU632_RS14730 mfd +1.2 5.6 transcription-repair coupling factor compare
LU632_RS09735 +1.2 3.4 hypothetical protein compare
LU632_RS14135 +1.2 5.5 DNA cytosine methyltransferase compare
LU632_RS23050 +1.2 2.2 hypothetical protein compare
LU632_RS03405 +1.2 1.6 hypothetical protein compare
LU632_RS22050 +1.2 5.7 YicC family protein compare
LU632_RS00165 +1.2 1.1 IS6 family transposase compare
LU632_RS00975 +1.1 3.5 Rsd/AlgQ family anti-sigma factor compare
LU632_RS07030 +1.1 1.6 hypothetical protein compare
LU632_RS00440 +1.1 2.9 PrgH/EprH family type III secretion apparatus protein compare
LU632_RS13205 +1.1 2.3 hypothetical protein compare
LU632_RS16135 pxpA +1.1 2.1 5-oxoprolinase subunit PxpA compare
LU632_RS01465 +1.1 1.1 hypothetical protein compare
LU632_RS02150 cybC +1.1 1.9 cytochrome b562 compare
LU632_RS04705 +1.1 1.7 helix-turn-helix domain-containing protein compare
LU632_RS08735 +1.1 3.4 phosphatase PAP2 family protein compare
LU632_RS12560 +1.1 1.1 DUF2498 family protein compare
LU632_RS04190 +1.1 1.1 hypothetical protein compare
LU632_RS03885 +1.1 5.3 serine/threonine protein kinase compare
LU632_RS05120 +1.1 0.8 TIGR03758 family integrating conjugative element protein compare
LU632_RS14620 +1.1 2.6 metal ABC transporter substrate-binding protein compare
LU632_RS20070 thpR +1.1 2.0 RNA 2',3'-cyclic phosphodiesterase compare
LU632_RS11095 +1.1 0.9 transposase zinc-binding domain-containing protein compare
LU632_RS10045 +1.1 2.4 YccF domain-containing protein compare
LU632_RS22170 fabY +1.1 3.8 fatty acid biosynthesis protein FabY compare
LU632_RS21615 +1.1 2.0 IS6 family transposase compare
LU632_RS22440 +1.1 2.0 DUF1488 domain-containing protein compare
LU632_RS15860 istB +1.1 1.4 IS21-like element helper ATPase IstB compare
LU632_RS26075 +1.1 3.0 hypothetical protein compare
LU632_RS08500 +1.1 1.0 transposase compare
LU632_RS08300 arsC +1.1 2.6 arsenate reductase (glutaredoxin) compare
LU632_RS25375 +1.1 1.3 hypothetical protein compare
LU632_RS03785 +1.1 3.6 DotU family type VI secretion system protein compare
LU632_RS09280 +1.1 2.6 tautomerase family protein compare
LU632_RS14125 +1.1 1.9 hypothetical protein compare
LU632_RS20840 +1.1 4.0 DUF445 family protein compare
LU632_RS17205 +1.1 1.0 Arc family DNA-binding protein compare
LU632_RS20365 +1.0 1.0 SelT/SelW/SelH family protein compare
LU632_RS23755 pspG +1.0 0.8 envelope stress response protein PspG compare
LU632_RS00575 mntP +1.0 2.0 manganese efflux pump MntP compare
LU632_RS00210 +1.0 1.8 hypothetical protein compare
LU632_RS01470 +1.0 3.0 conjugal transfer protein TraG N-terminal domain-containing protein compare
LU632_RS23835 +1.0 1.8 helix-turn-helix domain-containing protein compare
LU632_RS10770 +1.0 5.2 serine/threonine protein kinase compare
LU632_RS17500 +1.0 1.1 pyocin activator PrtN family protein compare
LU632_RS20100 panB +1.0 2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
LU632_RS02540 +1.0 1.6 YtjB family periplasmic protein compare
LU632_RS06350 relA +1.0 5.1 GTP diphosphokinase compare
LU632_RS14285 +1.0 2.7 hypothetical protein compare
LU632_RS03780 tssK +1.0 3.2 type VI secretion system baseplate subunit TssK compare
LU632_RS23140 +1.0 2.1 trehalase compare
LU632_RS22520 +1.0 3.1 DUF1992 domain-containing protein compare
LU632_RS25480 +1.0 1.9 helix-turn-helix domain-containing protein compare
LU632_RS22010 slmA +1.0 1.7 nucleoid occlusion factor SlmA compare
LU632_RS23175 +1.0 1.8 hypothetical protein compare
LU632_RS18695 +1.0 1.6 DUF1320 family protein compare
LU632_RS12890 +1.0 2.8 YchE family NAAT transporter compare
LU632_RS01995 +1.0 1.1 type VI secretion system tube protein Hcp compare
LU632_RS11705 +1.0 2.3 methyl-accepting chemotaxis protein compare
LU632_RS08890 gndA +1.0 2.7 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS12780 +1.0 1.1 BON domain-containing protein compare
LU632_RS12725 +1.0 2.7 YciK family oxidoreductase compare
LU632_RS25285 +1.0 1.9 transposase compare
LU632_RS05235 +1.0 1.9 hypothetical protein compare
LU632_RS03865 tssF +1.0 4.0 type VI secretion system baseplate subunit TssF compare
LU632_RS09110 +1.0 1.2 molecular chaperone compare
LU632_RS13330 +1.0 0.9 hypothetical protein compare
LU632_RS14960 +1.0 1.3 FAD-binding oxidoreductase compare
LU632_RS12665 +1.0 1.7 YdbL family protein compare
LU632_RS08040 +1.0 1.4 hypothetical protein compare
LU632_RS04550 +1.0 1.7 DUF2913 family protein compare
LU632_RS24805 atpI +1.0 0.7 F0F1 ATP synthase subunit I compare
LU632_RS25180 +1.0 1.5 DUF2313 domain-containing protein compare
LU632_RS03695 +1.0 3.2 PepSY domain-containing protein compare
LU632_RS21380 +1.0 2.7 barnase inhibitor compare
LU632_RS13785 +1.0 3.6 RNA polymerase sigma factor FliA compare
LU632_RS13340 +1.0 1.3 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment