Experiment set1S417 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

200 most important genes:

  gene name fitness t score description  
LU632_RS23980 tatC -8.6 -6.0 Sec-independent protein translocase subunit TatC compare
LU632_RS15245 purE -7.9 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS09955 pyrD -6.7 -4.7 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08785 -6.7 -4.6 glycosyltransferase family 2 protein compare
LU632_RS07865 purF -6.6 -6.4 amidophosphoribosyltransferase compare
LU632_RS08880 -6.3 -4.2 ABC transporter permease compare
LU632_RS06615 ptsI -6.3 -6.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS08790 -6.2 -7.4 EpsG family protein compare
LU632_RS16100 -6.1 -4.2 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS20950 pyrB -5.9 -4.1 aspartate carbamoyltransferase compare
LU632_RS08815 -5.9 -5.8 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS21755 -5.9 -13.7 adenylosuccinate synthase compare
LU632_RS02750 carB -5.9 -4.1 carbamoyl-phosphate synthase large subunit compare
LU632_RS16115 sdhC -5.8 -7.0 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS02755 carA -5.7 -8.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS17975 purL -5.7 -10.2 phosphoribosylformylglycinamidine synthase compare
LU632_RS08820 -5.7 -3.9 lipopolysaccharide biosynthesis protein compare
LU632_RS16090 odhB -5.6 -3.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS08775 -5.6 -3.9 protein tyrosine phosphatase compare
LU632_RS19610 argB -5.6 -3.7 acetylglutamate kinase compare
LU632_RS08780 wzc -5.6 -6.6 tyrosine-protein kinase Wzc compare
LU632_RS08275 purM -5.5 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS10340 pyrC -5.5 -3.8 dihydroorotase compare
LU632_RS21875 gpsA -5.4 -14.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS06610 crr -5.4 -3.4 PTS glucose transporter subunit IIA compare
LU632_RS08930 hisH -5.4 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS01015 purD -5.4 -3.7 phosphoribosylamine--glycine ligase compare
LU632_RS15425 rpoE -5.3 -9.0 RNA polymerase sigma factor RpoE compare
LU632_RS16110 sdhD -5.3 -10.4 succinate dehydrogenase membrane anchor subunit compare
LU632_RS21230 mlaC -5.3 -8.0 phospholipid-binding protein MlaC compare
LU632_RS16105 sdhA -5.3 -10.1 succinate dehydrogenase flavoprotein subunit compare
LU632_RS21235 mlaD -5.2 -8.6 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS08935 hisB -5.2 -6.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS12500 pyrF -5.2 -6.2 orotidine-5'-phosphate decarboxylase compare
LU632_RS08335 -5.2 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS20175 -5.2 -1.4 hypothetical protein compare
LU632_RS24270 gppA -5.1 -2.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS08925 hisA -5.1 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS08800 -5.1 -2.8 glycosyltransferase compare
LU632_RS08945 hisD -5.1 -5.0 histidinol dehydrogenase compare
LU632_RS19585 sthA -5.1 -13.2 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS21240 mlaE -5.1 -5.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS22810 -5.1 -10.8 aspartate aminotransferase family protein compare
LU632_RS08770 -5.0 -6.8 polysaccharide export protein compare
LU632_RS08920 hisF -4.9 -5.9 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS07775 aroC -4.9 -5.8 chorismate synthase compare
LU632_RS07970 -4.9 -11.3 NADH-quinone oxidoreductase subunit B compare
LU632_RS21245 mlaF -4.7 -10.6 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS16095 sucA -4.7 -3.2 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS22015 pyrE -4.7 -3.2 orotate phosphoribosyltransferase compare
LU632_RS19615 argC -4.6 -10.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS02100 -4.6 -18.1 hemolysin family protein compare
LU632_RS19620 argE -4.5 -5.4 acetylornithine deacetylase compare
LU632_RS08000 nuoI -4.5 -6.0 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS21225 mlaB -4.5 -5.8 lipid asymmetry maintenance protein MlaB compare
LU632_RS14010 ldcA -4.4 -6.7 muramoyltetrapeptide carboxypeptidase compare
LU632_RS09475 mntR -4.4 -3.6 manganese-binding transcriptional regulator MntR compare
LU632_RS07985 nuoF -4.4 -10.6 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS07995 nuoH -4.4 -6.1 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS07965 -4.3 -9.3 NADH-quinone oxidoreductase subunit A compare
LU632_RS22865 aroB -4.3 -2.9 3-dehydroquinate synthase compare
LU632_RS07975 nuoC -4.3 -15.2 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS08025 nuoN -4.2 -8.5 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS01020 purH -4.2 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS07300 mlaA -4.1 -14.3 phospholipid-binding lipoprotein MlaA compare
LU632_RS20695 bacA -4.1 -5.3 undecaprenyl-diphosphate phosphatase compare
LU632_RS15250 purK -4.1 -6.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS19980 glnD -4.1 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS08020 nuoM -4.1 -9.7 NADH-quinone oxidoreductase subunit M compare
LU632_RS08940 hisC -4.0 -13.2 histidinol-phosphate transaminase compare
LU632_RS08915 hisIE -4.0 -6.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS19600 argH -4.0 -11.6 argininosuccinate lyase compare
LU632_RS08005 nuoJ -4.0 -6.7 NADH-quinone oxidoreductase subunit J compare
LU632_RS03310 -4.0 -16.5 sucrose-6-phosphate hydrolase compare
LU632_RS02545 serB -4.0 -2.7 phosphoserine phosphatase compare
LU632_RS09795 aroA -3.9 -14.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS17615 -3.9 -4.4 YejL family protein compare
LU632_RS22140 glnL -3.9 -12.0 nitrogen regulation protein NR(II) compare
LU632_RS21360 degS -3.9 -12.6 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS12925 rssB -3.9 -2.2 two-component system response regulator RssB compare
LU632_RS16415 tatE -3.8 -1.0 twin-arginine translocase subunit TatE compare
LU632_RS09915 ompC -3.8 -6.4 porin OmpC compare
LU632_RS08015 nuoL -3.8 -12.4 NADH-quinone oxidoreductase subunit L compare
LU632_RS25495 -3.8 -2.0 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS25725 -3.8 -2.2 ParA family protein compare
LU632_RS24155 -3.8 -1.9 class I adenylate cyclase compare
LU632_RS08060 -3.7 -1.9 phage protease compare
LU632_RS21955 -3.7 -2.2 glycosyltransferase family 4 protein compare
LU632_RS12910 -3.7 -4.6 NAD-dependent epimerase compare
LU632_RS14835 plsX -3.7 -6.3 phosphate acyltransferase PlsX compare
LU632_RS19930 rseP -3.6 -6.8 sigma E protease regulator RseP compare
LU632_RS07990 nuoG -3.6 -11.3 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS24445 -3.5 -2.2 DUF413 domain-containing protein compare
LU632_RS08885 -3.5 -8.7 ABC transporter ATP-binding protein compare
LU632_RS08190 apbE -3.4 -2.3 FAD:protein FMN transferase ApbE compare
LU632_RS17820 ndk -3.4 -3.7 nucleoside-diphosphate kinase compare
LU632_RS08010 nuoK -3.4 -5.0 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS21365 mdh -3.3 -9.7 malate dehydrogenase compare
LU632_RS02865 leuD -3.3 -8.1 3-isopropylmalate dehydratase small subunit compare
LU632_RS08805 -3.3 -14.0 phage tailspike protein compare
LU632_RS06210 argA -3.3 -9.7 amino-acid N-acetyltransferase compare
LU632_RS21880 secB -3.3 -5.1 protein-export chaperone SecB compare
LU632_RS07980 nuoE -3.2 -2.1 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS02870 leuC -3.2 -11.3 3-isopropylmalate dehydratase large subunit compare
LU632_RS02065 hflK -3.2 -3.4 FtsH protease activity modulator HflK compare
LU632_RS02070 hflC -3.2 -4.1 protease modulator HflC compare
LU632_RS24150 -3.1 -2.2 lipoprotein compare
LU632_RS23310 gltP -3.1 -1.1 glutamate/aspartate:proton symporter GltP compare
LU632_RS16250 nagA -3.1 -7.9 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS09245 -3.0 -7.5 L,D-transpeptidase family protein compare
LU632_RS02050 miaA -3.0 -5.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS02615 thrB -3.0 -5.6 homoserine kinase compare
LU632_RS02880 leuA -3.0 -13.2 2-isopropylmalate synthase compare
LU632_RS22445 aroE -3.0 -4.3 shikimate dehydrogenase compare
LU632_RS06635 zipA -3.0 -4.6 cell division protein ZipA compare
LU632_RS19770 -3.0 -11.7 amino acid ABC transporter substrate-binding protein compare
LU632_RS10270 -3.0 -2.8 glucan biosynthesis protein G compare
LU632_RS10275 mdoH -3.0 -6.5 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS21085 secG -3.0 -3.9 preprotein translocase subunit SecG compare
LU632_RS06410 -3.0 -2.4 phosphoadenylyl-sulfate reductase compare
LU632_RS02875 leuB -2.9 -12.4 3-isopropylmalate dehydrogenase compare
LU632_RS19665 ftsN -2.9 -5.5 cell division protein FtsN compare
LU632_RS26015 -2.9 -6.8 hypothetical protein compare
LU632_RS00495 sctS -2.9 -1.5 type III secretion system export apparatus subunit SctS compare
LU632_RS12850 cls -2.9 -4.4 cardiolipin synthase compare
LU632_RS08950 hisG -2.9 -9.5 ATP phosphoribosyltransferase compare
LU632_RS18420 -2.9 -1.0 LysE family translocator compare
LU632_RS22135 glnG -2.9 -5.0 nitrogen regulation protein NR(I) compare
LU632_RS04250 yiaK -2.8 -4.2 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS19605 -2.8 -7.0 argininosuccinate synthase compare
LU632_RS19275 ftsE -2.8 -6.1 cell division ATP-binding protein FtsE compare
LU632_RS08850 rfbB -2.8 -5.3 dTDP-glucose 4,6-dehydratase compare
LU632_RS19775 -2.7 -11.9 amino acid ABC transporter permease compare
LU632_RS05855 serA -2.7 -9.7 phosphoglycerate dehydrogenase compare
LU632_RS15445 tyrA -2.7 -9.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS02910 rsmH -2.7 -8.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS12940 purU -2.7 -13.9 formyltetrahydrofolate deformylase compare
LU632_RS05960 sdhE -2.7 -4.9 FAD assembly factor SdhE compare
LU632_RS20270 -2.6 -0.9 IS5 family transposase compare
LU632_RS24405 -2.6 -11.2 branched-chain amino acid transaminase compare
LU632_RS15385 rnc -2.6 -3.1 ribonuclease III compare
LU632_RS22940 ompR -2.6 -5.4 two-component system response regulator OmpR compare
LU632_RS02140 -2.6 -3.6 ribosome-associated protein compare
LU632_RS24885 pstC -2.6 -4.5 phosphate ABC transporter permease PstC compare
LU632_RS09745 -2.6 -2.3 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS22935 envZ -2.5 -9.3 two-component system sensor histidine kinase EnvZ compare
LU632_RS20900 argF -2.5 -9.1 ornithine carbamoyltransferase compare
LU632_RS06040 lysA -2.4 -6.5 diaminopimelate decarboxylase compare
LU632_RS17785 bamB -2.4 -7.2 outer membrane protein assembly factor BamB compare
LU632_RS23985 tatB -2.4 -2.6 Sec-independent protein translocase protein TatB compare
LU632_RS19780 -2.4 -11.4 amino acid ABC transporter permease compare
LU632_RS19785 -2.4 -8.5 amino acid ABC transporter ATP-binding protein compare
LU632_RS07090 -2.4 -1.6 Rz1 family lipoprotein compare
LU632_RS24895 pstB -2.4 -1.6 phosphate ABC transporter ATP-binding protein PstB compare
LU632_RS05390 -2.3 -11.6 ornithine decarboxylase compare
LU632_RS24880 pstS -2.2 -4.7 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS24840 kup -2.2 -9.0 low affinity potassium transporter Kup compare
LU632_RS20545 metC -2.2 -10.4 cystathionine beta-lyase compare
LU632_RS21940 -2.2 -2.6 glycosyltransferase compare
LU632_RS26010 -2.2 -9.0 head-tail adaptor compare
LU632_RS18995 proC -2.1 -2.5 pyrroline-5-carboxylate reductase compare
LU632_RS15640 -2.1 -1.7 helix-turn-helix domain-containing protein compare
LU632_RS04740 -2.1 -0.7 DNA topoisomerase IV subunit B compare
LU632_RS25735 -2.1 -2.5 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS08750 asmA -2.0 -8.8 outer membrane assembly protein AsmA compare
LU632_RS19270 ftsX -2.0 -8.4 permease-like cell division protein FtsX compare
LU632_RS26110 -2.0 -6.0 ParA family protein compare
LU632_RS03300 -2.0 -10.3 carbohydrate porin compare
LU632_RS14710 -2.0 -1.2 antitermination protein compare
LU632_RS04280 araD -2.0 -8.9 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS19450 pitA -2.0 -3.2 inorganic phosphate transporter PitA compare
LU632_RS09700 clpS -2.0 -3.5 ATP-dependent Clp protease adapter ClpS compare
LU632_RS15905 galT -1.9 -4.5 galactose-1-phosphate uridylyltransferase compare
LU632_RS00220 -1.9 -9.5 family 10 glycosylhydrolase compare
LU632_RS03305 -1.9 -7.9 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS14860 rne -1.9 -0.7 ribonuclease E compare
LU632_RS24205 rffM -1.9 -6.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS21345 -1.8 -8.3 cell division protein ZapE compare
LU632_RS26005 -1.8 -4.4 hypothetical protein compare
LU632_RS24250 wecA -1.8 -11.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS22410 metA -1.8 -9.0 homoserine O-succinyltransferase compare
LU632_RS01085 -1.8 -3.0 class I SAM-dependent methyltransferase compare
LU632_RS21895 envC -1.8 -7.7 murein hydrolase activator EnvC compare
LU632_RS13170 -1.8 -1.1 YoaH family protein compare
LU632_RS15910 galK -1.8 -4.4 galactokinase compare
LU632_RS06335 -1.8 -6.6 glycerate kinase compare
LU632_RS07855 dedD -1.7 -3.3 cell division protein DedD compare
LU632_RS07860 cvpA -1.7 -4.7 colicin V production protein compare
LU632_RS14735 -1.7 -6.8 glycine zipper 2TM domain-containing protein compare
LU632_RS17645 -1.7 -1.3 hypothetical protein compare
LU632_RS19640 metB -1.7 -4.0 cystathionine gamma-synthase compare
LU632_RS10690 -1.7 -1.5 hypothetical protein compare
LU632_RS05510 speA -1.7 -1.8 biosynthetic arginine decarboxylase compare
LU632_RS13085 dsbB -1.7 -4.6 disulfide bond formation protein DsbB compare
LU632_RS24400 ilvD -1.7 -6.7 dihydroxy-acid dehydratase compare
LU632_RS24890 pstA -1.7 -1.9 phosphate ABC transporter permease PstA compare
LU632_RS13120 minD -1.6 -7.1 septum site-determining protein MinD compare
LU632_RS17320 fruK -1.6 -3.5 1-phosphofructokinase compare
LU632_RS24385 ilvC -1.6 -5.3 ketol-acid reductoisomerase compare
LU632_RS08795 -1.6 -7.6 glycosyltransferase compare


Specific Phenotypes

For 1 genes in this experiment