Experiment set1S417 for Phocaeicola dorei CL03T12C01

Compare to:

D-Raffinose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02980 -7.6 -9.7 N-acetyltransferase compare
ABI39_RS21045 -7.2 -5.0 tryptophan synthase subunit beta compare
ABI39_RS07005 -6.9 -6.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS16910 -6.8 -11.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS02875 -6.7 -12.7 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS21060 -6.7 -8.6 anthranilate phosphoribosyltransferase compare
ABI39_RS11830 -6.6 -6.4 ATP phosphoribosyltransferase compare
ABI39_RS02880 -6.6 -10.7 glutamate 5-kinase compare
ABI39_RS04245 -6.4 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS06055 -6.4 -9.7 phosphoribosylamine--glycine ligase compare
ABI39_RS04685 -6.2 -7.2 acetylglutamate kinase compare
ABI39_RS02315 -6.2 -10.4 IMP dehydrogenase compare
ABI39_RS12665 -6.2 -8.5 shikimate dehydrogenase compare
ABI39_RS12715 -6.2 -13.6 dihydroxy-acid dehydratase compare
ABI39_RS07790 -6.1 -10.4 M20 family metallo-hydrolase compare
ABI39_RS00770 -6.1 -14.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS02960 -6.1 -13.4 pyrroline-5-carboxylate reductase compare
ABI39_RS14225 -6.1 -8.3 glycosyltransferase compare
ABI39_RS00475 -6.1 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02975 -6.0 -13.2 argininosuccinate synthase compare
ABI39_RS11835 -6.0 -9.1 histidinol dehydrogenase compare
ABI39_RS16905 -5.9 -15.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS00405 -5.9 -16.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS19930 -5.9 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10430 -5.9 -17.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS08240 -5.9 -17.8 substrate-binding domain-containing protein compare
ABI39_RS04795 -5.9 -4.0 M28 family peptidase compare
ABI39_RS02970 -5.9 -13.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10200 -5.8 -14.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10440 -5.8 -9.1 threonine synthase compare
ABI39_RS14230 -5.8 -13.5 alpha-amylase compare
ABI39_RS19935 -5.8 -9.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS07095 -5.7 -22.3 argininosuccinate lyase compare
ABI39_RS12720 -5.7 -17.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS05175 -5.7 -6.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS04695 -5.7 -8.4 shikimate kinase compare
ABI39_RS10260 -5.7 -11.2 adenylosuccinate synthase compare
ABI39_RS19925 -5.6 -6.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS12735 -5.6 -10.3 ketol-acid reductoisomerase compare
ABI39_RS11845 -5.5 -11.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10510 -5.5 -10.4 prephenate dehydratase compare
ABI39_RS08235 -5.5 -10.6 carbohydrate kinase compare
ABI39_RS17315 -5.5 -14.2 alpha amylase C-terminal domain-containing protein compare
ABI39_RS12675 -5.5 -6.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS17420 -5.5 -9.5 serine hydroxymethyltransferase compare
ABI39_RS11840 -5.5 -7.5 histidinol-phosphate transaminase compare
ABI39_RS02870 -5.3 -11.9 acetylornithine carbamoyltransferase compare
ABI39_RS21065 -5.3 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10215 -5.3 -10.0 3-isopropylmalate dehydrogenase compare
ABI39_RS06675 -5.1 -9.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02965 -5.1 -14.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10435 -5.0 -10.9 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10495 -5.0 -9.3 prephenate dehydrogenase compare
ABI39_RS10205 -5.0 -5.4 3-isopropylmalate dehydratase small subunit compare
ABI39_RS21075 -4.9 -10.0 tryptophan synthase subunit alpha compare
ABI39_RS06670 -4.9 -17.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS12645 -4.9 -14.7 chorismate synthase compare
ABI39_RS09575 -4.9 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS02500 -4.9 -9.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS01300 -4.8 -12.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS05660 -4.8 -9.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10210 -4.8 -12.3 2-isopropylmalate synthase compare
ABI39_RS06250 -4.6 -12.0 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS08230 -4.6 -18.0 MFS transporter compare
ABI39_RS10195 -4.6 -7.9 2-isopropylmalate synthase compare
ABI39_RS10870 -4.6 -10.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS10505 -4.6 -14.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS14560 -4.5 -5.3 aspartate 1-decarboxylase compare
ABI39_RS08175 -4.5 -5.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS08035 -4.4 -3.1 adenylosuccinate lyase compare
ABI39_RS19985 -4.4 -3.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS08220 -4.3 -19.8 TonB-dependent receptor compare
ABI39_RS00205 -4.3 -4.2 phosphoglucosamine mutase compare
ABI39_RS01415 -4.3 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS19920 -4.3 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS10500 -4.2 -7.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS04860 -4.2 -5.6 HigA family addiction module antidote protein compare
ABI39_RS12955 -4.2 -5.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS21050 -4.0 -9.9 anthranilate synthase component I family protein compare
ABI39_RS01360 -4.0 -10.5 hypothetical protein compare
ABI39_RS17140 -4.0 -3.9 AAA family ATPase compare
ABI39_RS10640 -4.0 -14.1 serine dehydratase subunit alpha family protein compare
ABI39_RS10110 -3.9 -14.3 S9 family peptidase compare
ABI39_RS02755 -3.9 -3.7 glycosyltransferase compare
ABI39_RS17945 -3.9 -14.8 glutamine synthetase III compare
ABI39_RS17170 -3.8 -3.7 protein BatD compare
ABI39_RS08225 -3.8 -10.8 GH32 C-terminal domain-containing protein compare
ABI39_RS04885 -3.7 -5.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS17160 -3.5 -3.4 VWA domain-containing protein compare
ABI39_RS18745 -3.5 -8.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS04700 -3.5 -4.1 type I DNA topoisomerase compare
ABI39_RS18330 -3.5 -12.6 PD40 domain-containing protein compare
ABI39_RS08195 -3.4 -6.3 hypothetical protein compare
ABI39_RS06995 -3.4 -8.0 tetratricopeptide repeat protein compare
ABI39_RS04505 -3.3 -8.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04230 -3.3 -7.0 RNA polymerase factor sigma-54 compare
ABI39_RS04690 -3.2 -10.3 biosynthetic arginine decarboxylase compare
ABI39_RS19950 -3.2 -4.8 diaminopimelate decarboxylase compare
ABI39_RS19945 -3.1 -12.5 aspartate kinase compare
ABI39_RS12755 -3.1 -4.2 SurA N-terminal domain-containing protein compare
ABI39_RS07010 -3.1 -3.6 pyruvate kinase compare
ABI39_RS19385 -3.0 -3.9 hypothetical protein compare
ABI39_RS05450 -3.0 -5.7 redox-regulated ATPase YchF compare
ABI39_RS08305 -3.0 -10.0 DUF4831 family protein compare
ABI39_RS17950 -2.9 -3.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS00520 -2.7 -10.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS15415 -2.6 -7.5 hypothetical protein compare
ABI39_RS14220 -2.6 -6.6 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS07090 -2.6 -1.9 hypothetical protein compare
ABI39_RS08180 -2.5 -14.6 anaerobic ribonucleoside triphosphate reductase compare
ABI39_RS12560 -2.5 -12.2 GGGtGRT protein compare
ABI39_RS03830 -2.4 -2.0 ribosome-associated translation inhibitor RaiA compare
ABI39_RS12565 -2.4 -7.1 hypothetical protein compare
ABI39_RS09195 -2.4 -2.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS14150 -2.4 -15.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS17640 -2.3 -5.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS12980 -2.3 -3.8 HAD family hydrolase compare
ABI39_RS19915 -2.3 -12.0 formyltetrahydrofolate deformylase compare
ABI39_RS12725 -2.3 -2.6 acetolactate synthase small subunit compare
ABI39_RS10650 -2.2 -12.9 AraC family transcriptional regulator compare
ABI39_RS09845 -2.2 -2.6 (d)CMP kinase compare
ABI39_RS06050 -2.1 -4.1 hypothetical protein compare
ABI39_RS17150 -2.1 -4.0 hypothetical protein compare
ABI39_RS21055 -2.0 -4.5 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS16870 -2.0 -4.3 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS20615 -2.0 -12.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS09855 -1.9 -4.9 polyprenyl synthetase family protein compare
ABI39_RS17320 -1.9 -1.3 YhcH/YjgK/YiaL family protein compare
ABI39_RS17780 -1.8 -9.7 HesA/MoeB/ThiF family protein compare
ABI39_RS02985 -1.8 -5.1 arginine repressor compare
ABI39_RS15855 -1.8 -3.0 helix-turn-helix transcriptional regulator compare
ABI39_RS11940 -1.8 -11.3 saccharopine dehydrogenase family protein compare
ABI39_RS17175 -1.8 -4.9 tetratricopeptide repeat protein compare
ABI39_RS13000 -1.8 -4.9 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS12770 -1.8 -2.7 hypothetical protein compare
ABI39_RS17775 -1.7 -10.4 2-iminoacetate synthase ThiH compare
ABI39_RS00410 -1.7 -3.0 response regulator compare
ABI39_RS02350 -1.7 -8.6 ABC transporter permease compare
ABI39_RS06115 -1.7 -7.9 phosphatase PAP2 family protein compare
ABI39_RS04930 -1.7 -4.1 helix-turn-helix transcriptional regulator compare
ABI39_RS13185 -1.6 -2.4 manganese efflux pump compare
ABI39_RS11405 -1.6 -9.2 hypothetical protein compare
ABI39_RS09835 -1.6 -7.8 6-phosphofructokinase compare
ABI39_RS01325 -1.6 -8.8 phosphoenolpyruvate synthase compare
ABI39_RS04970 -1.6 -4.7 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS17755 -1.6 -3.7 thiazole synthase compare
ABI39_RS17750 -1.5 -5.9 thiamine phosphate synthase compare
ABI39_RS13180 -1.5 -5.0 FAD:protein FMN transferase compare
ABI39_RS16895 -1.5 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS02355 -1.5 -7.1 ABC transporter ATP-binding protein compare
ABI39_RS12970 -1.5 -6.6 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS09285 -1.5 -2.6 hypothetical protein compare
ABI39_RS16500 -1.5 -6.9 redoxin domain-containing protein compare
ABI39_RS12945 -1.5 -2.3 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS11670 -1.5 -2.8 molecular chaperone DnaJ compare
ABI39_RS17465 -1.4 -8.7 DUF3078 domain-containing protein compare
ABI39_RS18300 -1.4 -4.1 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS17795 -1.4 -6.2 thiamine phosphate synthase compare
ABI39_RS18160 -1.4 -8.4 MFS transporter compare
ABI39_RS15410 -1.4 -4.3 DUF4296 domain-containing protein compare
ABI39_RS06060 -1.4 -3.6 S9 family peptidase compare
ABI39_RS20175 -1.3 -2.7 translation elongation factor 4 compare
ABI39_RS14185 -1.3 -9.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
ABI39_RS19400 -1.2 -1.4 helix-turn-helix domain-containing protein compare
ABI39_RS15840 -1.2 -2.8 hypothetical protein compare
ABI39_RS18165 -1.2 -1.9 DUF5024 domain-containing protein compare
ABI39_RS04280 -1.2 -2.8 DUF4292 domain-containing protein compare
ABI39_RS19775 -1.2 -1.8 tRNA-Met compare
ABI39_RS14715 -1.2 -5.1 RidA family protein compare
ABI39_RS00745 -1.1 -2.0 tRNA-Met compare
ABI39_RS11735 -1.1 -3.7 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS14245 -1.1 -6.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS02495 -1.1 -7.9 MotA/TolQ/ExbB proton channel family protein compare
ABI39_RS20070 -1.1 -5.3 UDP-glucose 4-epimerase GalE compare
ABI39_RS17765 -1.1 -2.0 hypothetical protein compare
ABI39_RS17730 -1.1 -6.9 carboxynorspermidine decarboxylase compare
ABI39_RS00515 -1.1 -1.3 hypothetical protein compare
ABI39_RS12960 -1.0 -6.6 NDP-sugar synthase compare
ABI39_RS09515 -1.0 -3.2 nucleoside deaminase compare
ABI39_RS14260 -1.0 -6.4 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS11570 -1.0 -5.5 transporter substrate-binding domain-containing protein compare
ABI39_RS05775 -1.0 -7.6 radical SAM protein compare
ABI39_RS00050 -1.0 -3.0 hypothetical protein compare
ABI39_RS02490 -1.0 -3.8 biopolymer transporter ExbD compare
ABI39_RS14265 -1.0 -5.2 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS20080 -1.0 -5.5 electron transport complex subunit RsxA compare
ABI39_RS15360 -0.9 -3.2 Na+/H+ antiporter NhaC family protein compare
ABI39_RS04950 -0.9 -1.9 DEAD/DEAH box helicase compare
ABI39_RS08850 -0.9 -3.4 toprim domain-containing protein compare
ABI39_RS02375 -0.9 -3.4 DUF177 domain-containing protein compare
ABI39_RS21500 -0.9 -3.7 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS06065 -0.9 -1.4 RNA methyltransferase compare
ABI39_RS15445 -0.9 -2.5 tRNA-Lys compare
ABI39_RS11655 -0.9 -2.4 MFS transporter compare
ABI39_RS13225 -0.9 -2.0 phosphopyruvate hydratase compare
ABI39_RS07910 -0.9 -5.4 thiamine-phosphate kinase compare
ABI39_RS14250 -0.9 -5.4 8-amino-7-oxononanoate synthase compare
ABI39_RS17760 -0.9 -5.0 phosphomethylpyrimidine synthase ThiC compare
ABI39_RS08145 -0.9 -1.1 DUF4290 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source D-Raffinose across organisms