Experiment set1S416 for Phocaeicola dorei CL03T12C01

Compare to:

N-Acetyl-D-Glucosamine carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS10495 -9.2 -6.4 prephenate dehydrogenase compare
ABI39_RS07005 -8.2 -5.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS06055 -7.9 -7.7 phosphoribosylamine--glycine ligase compare
ABI39_RS10260 -7.8 -12.4 adenylosuccinate synthase compare
ABI39_RS02980 -7.3 -8.6 N-acetyltransferase compare
ABI39_RS21065 -7.1 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12715 -7.1 -14.0 dihydroxy-acid dehydratase compare
ABI39_RS02970 -7.1 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS11835 -6.8 -8.0 histidinol dehydrogenase compare
ABI39_RS14225 -6.8 -10.0 glycosyltransferase compare
ABI39_RS12675 -6.7 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS11840 -6.7 -6.5 histidinol-phosphate transaminase compare
ABI39_RS10510 -6.7 -12.5 prephenate dehydratase compare
ABI39_RS02870 -6.7 -10.9 acetylornithine carbamoyltransferase compare
ABI39_RS02880 -6.7 -14.2 glutamate 5-kinase compare
ABI39_RS19925 -6.5 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS04245 -6.4 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10500 -6.3 -7.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS04695 -6.3 -7.2 shikimate kinase compare
ABI39_RS10440 -6.3 -7.6 threonine synthase compare
ABI39_RS00405 -6.3 -14.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS02875 -6.2 -14.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02975 -6.2 -12.6 argininosuccinate synthase compare
ABI39_RS12645 -6.2 -14.8 chorismate synthase compare
ABI39_RS00770 -6.2 -15.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS21060 -6.2 -11.3 anthranilate phosphoribosyltransferase compare
ABI39_RS12720 -6.1 -16.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10205 -6.1 -6.7 3-isopropylmalate dehydratase small subunit compare
ABI39_RS07095 -6.1 -20.0 argininosuccinate lyase compare
ABI39_RS05660 -6.1 -13.0 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS17315 -6.0 -13.5 alpha amylase C-terminal domain-containing protein compare
ABI39_RS19985 -6.0 -4.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10215 -5.9 -12.1 3-isopropylmalate dehydrogenase compare
ABI39_RS10210 -5.9 -9.5 2-isopropylmalate synthase compare
ABI39_RS04795 -5.8 -4.0 M28 family peptidase compare
ABI39_RS11845 -5.8 -10.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10435 -5.8 -13.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS21045 -5.7 -7.9 tryptophan synthase subunit beta compare
ABI39_RS16910 -5.7 -10.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS10430 -5.7 -13.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02315 -5.7 -10.9 IMP dehydrogenase compare
ABI39_RS14230 -5.6 -13.5 alpha-amylase compare
ABI39_RS10200 -5.6 -18.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS21075 -5.5 -7.0 tryptophan synthase subunit alpha compare
ABI39_RS07790 -5.5 -9.0 M20 family metallo-hydrolase compare
ABI39_RS00475 -5.5 -6.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19930 -5.4 -5.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS16905 -5.4 -13.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12735 -5.4 -7.5 ketol-acid reductoisomerase compare
ABI39_RS04685 -5.4 -7.2 acetylglutamate kinase compare
ABI39_RS19935 -5.4 -8.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS02960 -5.3 -11.7 pyrroline-5-carboxylate reductase compare
ABI39_RS17420 -5.3 -8.8 serine hydroxymethyltransferase compare
ABI39_RS02500 -5.3 -13.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS01300 -5.2 -12.1 NADP-specific glutamate dehydrogenase compare
ABI39_RS12665 -5.2 -9.8 shikimate dehydrogenase compare
ABI39_RS06675 -5.1 -9.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS09575 -4.9 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS10505 -4.8 -14.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS19920 -4.8 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS00205 -4.7 -3.3 phosphoglucosamine mutase compare
ABI39_RS06670 -4.7 -16.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS14560 -4.7 -5.5 aspartate 1-decarboxylase compare
ABI39_RS21050 -4.6 -8.6 anthranilate synthase component I family protein compare
ABI39_RS10195 -4.5 -6.6 2-isopropylmalate synthase compare
ABI39_RS08035 -4.4 -3.1 adenylosuccinate lyase compare
ABI39_RS02755 -4.4 -3.0 glycosyltransferase compare
ABI39_RS14220 -4.4 -9.5 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS10870 -4.4 -11.2 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS12955 -4.2 -5.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS11830 -4.2 -6.9 ATP phosphoribosyltransferase compare
ABI39_RS06250 -4.2 -18.8 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17140 -4.1 -4.0 AAA family ATPase compare
ABI39_RS19950 -3.9 -3.8 diaminopimelate decarboxylase compare
ABI39_RS05175 -3.9 -9.1 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS02965 -3.8 -16.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS17170 -3.8 -3.7 protein BatD compare
ABI39_RS10640 -3.8 -13.4 serine dehydratase subunit alpha family protein compare
ABI39_RS18745 -3.6 -8.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS00515 -3.6 -4.0 hypothetical protein compare
ABI39_RS17320 -3.6 -2.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS19945 -3.6 -10.5 aspartate kinase compare
ABI39_RS17160 -3.6 -3.4 VWA domain-containing protein compare
ABI39_RS04505 -3.3 -6.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04690 -3.3 -10.9 biosynthetic arginine decarboxylase compare
ABI39_RS09845 -3.3 -2.3 (d)CMP kinase compare
ABI39_RS04230 -3.2 -6.8 RNA polymerase factor sigma-54 compare
ABI39_RS12755 -3.1 -3.7 SurA N-terminal domain-containing protein compare
ABI39_RS07090 -3.0 -2.2 hypothetical protein compare
ABI39_RS04860 -2.9 -3.4 HigA family addiction module antidote protein compare
ABI39_RS21350 -2.7 -1.9 aspartate--ammonia ligase compare
ABI39_RS04700 -2.7 -4.1 type I DNA topoisomerase compare
ABI39_RS15415 -2.7 -7.8 hypothetical protein compare
ABI39_RS17640 -2.6 -5.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS07010 -2.6 -3.5 pyruvate kinase compare
ABI39_RS05450 -2.6 -4.9 redox-regulated ATPase YchF compare
ABI39_RS17150 -2.5 -4.3 hypothetical protein compare
ABI39_RS17945 -2.5 -13.0 glutamine synthetase III compare
ABI39_RS12725 -2.5 -3.7 acetolactate synthase small subunit compare
ABI39_RS12980 -2.4 -4.0 HAD family hydrolase compare
ABI39_RS06995 -2.4 -9.7 tetratricopeptide repeat protein compare
ABI39_RS17175 -2.3 -6.8 tetratricopeptide repeat protein compare
ABI39_RS04885 -2.2 -5.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS14150 -2.2 -13.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS00520 -2.2 -7.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS15410 -2.2 -5.5 DUF4296 domain-containing protein compare
ABI39_RS13000 -2.2 -5.4 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS00410 -2.1 -3.5 response regulator compare
ABI39_RS11405 -2.1 -10.9 hypothetical protein compare
ABI39_RS08195 -2.1 -5.7 hypothetical protein compare
ABI39_RS09195 -2.1 -2.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS10110 -2.1 -10.9 S9 family peptidase compare
ABI39_RS01360 -2.0 -8.5 hypothetical protein compare
ABI39_RS19385 -2.0 -3.5 hypothetical protein compare
ABI39_RS20615 -2.0 -11.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS12560 -2.0 -8.7 GGGtGRT protein compare
ABI39_RS02985 -2.0 -5.6 arginine repressor compare
ABI39_RS17770 -2.0 -5.0 flavodoxin family protein compare
ABI39_RS16875 -1.9 -3.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS17750 -1.9 -7.2 thiamine phosphate synthase compare
ABI39_RS11545 -1.9 -8.2 hypothetical protein compare
ABI39_RS12565 -1.9 -7.9 hypothetical protein compare
ABI39_RS12970 -1.9 -6.7 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS15770 -1.8 -2.8 hypothetical protein compare
ABI39_RS17745 -1.8 -2.8 sulfur carrier protein ThiS compare
ABI39_RS16880 -1.8 -4.2 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS11940 -1.8 -12.3 saccharopine dehydrogenase family protein compare
ABI39_RS17775 -1.8 -10.6 2-iminoacetate synthase ThiH compare
ABI39_RS21055 -1.7 -5.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS06115 -1.7 -10.1 phosphatase PAP2 family protein compare
ABI39_RS10650 -1.7 -10.9 AraC family transcriptional regulator compare
ABI39_RS11670 -1.7 -2.8 molecular chaperone DnaJ compare
ABI39_RS08230 -1.6 -9.5 MFS transporter compare
ABI39_RS12945 -1.6 -2.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS09855 -1.6 -4.0 polyprenyl synthetase family protein compare
ABI39_RS13150 -1.6 -9.2 S41 family peptidase compare
ABI39_RS01325 -1.6 -8.1 phosphoenolpyruvate synthase compare
ABI39_RS04280 -1.5 -4.2 DUF4292 domain-containing protein compare
ABI39_RS02480 -1.5 -2.7 DJ-1/PfpI family protein compare
ABI39_RS08225 -1.5 -8.8 GH32 C-terminal domain-containing protein compare
ABI39_RS17755 -1.5 -4.2 thiazole synthase compare
ABI39_RS11550 -1.5 -8.6 hypothetical protein compare
ABI39_RS12770 -1.4 -2.8 hypothetical protein compare
ABI39_RS16895 -1.4 -2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS02470 -1.4 -4.3 ATP-dependent DNA helicase RecG compare
ABI39_RS17795 -1.4 -7.7 thiamine phosphate synthase compare
ABI39_RS20175 -1.4 -2.5 translation elongation factor 4 compare
ABI39_RS16885 -1.4 -2.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS13180 -1.4 -3.5 FAD:protein FMN transferase compare
ABI39_RS20355 -1.4 -10.1 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS19915 -1.4 -5.8 formyltetrahydrofolate deformylase compare
ABI39_RS17780 -1.4 -7.0 HesA/MoeB/ThiF family protein compare
ABI39_RS16870 -1.4 -3.4 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS08145 -1.4 -2.2 DUF4290 domain-containing protein compare
ABI39_RS13855 -1.3 -4.6 response regulator transcription factor compare
ABI39_RS12800 -1.3 -7.9 hypothetical protein compare
ABI39_RS02655 -1.3 -10.8 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS04970 -1.3 -4.3 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS15840 -1.3 -3.5 hypothetical protein compare
ABI39_RS08850 -1.3 -4.3 toprim domain-containing protein compare
ABI39_RS08235 -1.3 -7.5 carbohydrate kinase compare
ABI39_RS20070 -1.3 -4.3 UDP-glucose 4-epimerase GalE compare
ABI39_RS04285 -1.3 -7.7 tetratricopeptide repeat protein compare
ABI39_RS06010 -1.2 -4.7 polysaccharide deacetylase family protein compare
ABI39_RS12960 -1.2 -6.2 NDP-sugar synthase compare
ABI39_RS21210 -1.2 -6.5 glucosamine-6-phosphate deaminase compare
ABI39_RS17765 -1.2 -2.7 hypothetical protein compare
ABI39_RS12965 -1.2 -6.3 hypothetical protein compare
ABI39_RS04930 -1.2 -4.9 helix-turn-helix transcriptional regulator compare
ABI39_RS17730 -1.2 -6.8 carboxynorspermidine decarboxylase compare
ABI39_RS06060 -1.2 -3.1 S9 family peptidase compare
ABI39_RS03880 -1.1 -8.6 PDZ domain-containing protein compare
ABI39_RS09515 -1.1 -2.8 nucleoside deaminase compare
ABI39_RS18330 -1.1 -7.3 PD40 domain-containing protein compare
ABI39_RS16760 -1.1 -2.1 hypothetical protein compare
ABI39_RS18740 -1.1 -4.5 ATP-binding protein compare
ABI39_RS20405 -1.1 -2.6 GDP-L-fucose synthase compare
ABI39_RS09230 -1.1 -2.2 hypothetical protein compare
ABI39_RS15425 -1.1 -8.2 BamA/TamA family outer membrane protein compare
ABI39_RS17950 -1.0 -1.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS09850 -1.0 -3.7 energy transducer TonB compare
ABI39_RS07070 -1.0 -6.2 peptide chain release factor N(5)-glutamine methyltransferase compare
ABI39_RS04950 -1.0 -2.2 DEAD/DEAH box helicase compare
ABI39_RS18165 -1.0 -1.6 DUF5024 domain-containing protein compare
ABI39_RS11140 -1.0 -1.5 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS06625 -1.0 -3.0 rhomboid family intramembrane serine protease compare
ABI39_RS20930 -1.0 -7.0 tetratricopeptide repeat protein compare
ABI39_RS14240 -1.0 -4.1 biotin synthase BioB compare
ABI39_RS11880 -1.0 -1.8 hypothetical protein compare
ABI39_RS06380 -1.0 -4.7 GH3 auxin-responsive promoter family protein compare
ABI39_RS14250 -0.9 -5.2 8-amino-7-oxononanoate synthase compare
ABI39_RS22955 -0.9 -2.6 hypothetical protein compare
ABI39_RS08305 -0.9 -4.4 DUF4831 family protein compare
ABI39_RS03160 -0.9 -1.8 helix-turn-helix domain-containing protein compare
ABI39_RS16705 -0.9 -7.2 translocation/assembly module TamB compare
ABI39_RS18025 -0.9 -1.6 LytTR family transcriptional regulator compare
ABI39_RS17205 -0.9 -1.7 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06065 -0.9 -1.1 RNA methyltransferase compare
ABI39_RS05650 -0.9 -7.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source N-Acetyl-D-Glucosamine across organisms