Experiment set1S415 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE, Melon 2 Petiole 3 (TE-S-M2-P3)

200 most important genes:

  gene name fitness t score description  
LU632_RS23980 tatC -6.8 -4.7 Sec-independent protein translocase subunit TatC compare
LU632_RS19275 ftsE -6.3 -3.6 cell division ATP-binding protein FtsE compare
LU632_RS08885 -6.3 -3.7 ABC transporter ATP-binding protein compare
LU632_RS15245 purE -6.1 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS08880 -5.9 -2.6 ABC transporter permease compare
LU632_RS16115 sdhC -5.6 -3.9 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS15425 rpoE -5.6 -5.5 RNA polymerase sigma factor RpoE compare
LU632_RS21235 mlaD -5.5 -3.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS25495 -5.2 -1.2 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS21360 degS -5.1 -5.0 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS16110 sdhD -5.0 -3.5 succinate dehydrogenase membrane anchor subunit compare
LU632_RS22140 glnL -5.0 -3.4 nitrogen regulation protein NR(II) compare
LU632_RS02865 leuD -5.0 -3.4 3-isopropylmalate dehydratase small subunit compare
LU632_RS17820 ndk -4.9 -1.9 nucleoside-diphosphate kinase compare
LU632_RS08790 -4.9 -3.4 EpsG family protein compare
LU632_RS20900 argF -4.9 -3.4 ornithine carbamoyltransferase compare
LU632_RS07865 purF -4.9 -3.4 amidophosphoribosyltransferase compare
LU632_RS09955 pyrD -4.8 -3.3 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS21245 mlaF -4.8 -3.3 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS08785 -4.8 -3.3 glycosyltransferase family 2 protein compare
LU632_RS20695 bacA -4.8 -2.9 undecaprenyl-diphosphate phosphatase compare
LU632_RS19585 sthA -4.7 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS09475 mntR -4.7 -2.3 manganese-binding transcriptional regulator MntR compare
LU632_RS21875 gpsA -4.5 -7.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS08815 -4.5 -2.8 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS21240 mlaE -4.4 -3.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS06615 ptsI -4.4 -6.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS19615 argC -4.4 -3.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS05960 sdhE -4.4 -2.3 FAD assembly factor SdhE compare
LU632_RS13085 dsbB -4.4 -3.0 disulfide bond formation protein DsbB compare
LU632_RS02100 -4.4 -4.3 hemolysin family protein compare
LU632_RS08795 -4.3 -4.2 glycosyltransferase compare
LU632_RS21085 secG -4.3 -2.2 preprotein translocase subunit SecG compare
LU632_RS05855 serA -4.3 -5.1 phosphoglycerate dehydrogenase compare
LU632_RS16100 -4.3 -2.9 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS22810 -4.2 -2.9 aspartate aminotransferase family protein compare
LU632_RS03310 -4.2 -9.4 sucrose-6-phosphate hydrolase compare
LU632_RS08805 -4.1 -5.7 phage tailspike protein compare
LU632_RS20950 pyrB -4.1 -2.9 aspartate carbamoyltransferase compare
LU632_RS19270 ftsX -4.1 -10.6 permease-like cell division protein FtsX compare
LU632_RS08930 hisH -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS16480 -4.1 -4.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS08915 hisIE -4.1 -2.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS21225 mlaB -4.1 -2.8 lipid asymmetry maintenance protein MlaB compare
LU632_RS17975 purL -4.1 -2.8 phosphoribosylformylglycinamidine synthase compare
LU632_RS08950 hisG -4.0 -6.2 ATP phosphoribosyltransferase compare
LU632_RS19775 -4.0 -7.2 amino acid ABC transporter permease compare
LU632_RS21755 -4.0 -12.4 adenylosuccinate synthase compare
LU632_RS02875 leuB -4.0 -6.1 3-isopropylmalate dehydrogenase compare
LU632_RS02750 carB -4.0 -2.8 carbamoyl-phosphate synthase large subunit compare
LU632_RS02870 leuC -3.9 -6.6 3-isopropylmalate dehydratase large subunit compare
LU632_RS02755 carA -3.9 -6.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS17615 -3.9 -2.6 YejL family protein compare
LU632_RS07995 nuoH -3.9 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS07985 nuoF -3.9 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS21230 mlaC -3.9 -5.3 phospholipid-binding protein MlaC compare
LU632_RS16250 nagA -3.8 -6.4 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS07975 nuoC -3.8 -5.2 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS16105 sdhA -3.8 -3.7 succinate dehydrogenase flavoprotein subunit compare
LU632_RS04270 ulaD -3.8 -3.3 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS25375 -3.8 -1.5 hypothetical protein compare
LU632_RS19930 rseP -3.8 -2.6 sigma E protease regulator RseP compare
LU632_RS08000 nuoI -3.8 -2.6 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS08820 -3.8 -2.6 lipopolysaccharide biosynthesis protein compare
LU632_RS08935 hisB -3.8 -2.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS06635 zipA -3.8 -1.8 cell division protein ZipA compare
LU632_RS08780 wzc -3.7 -2.6 tyrosine-protein kinase Wzc compare
LU632_RS10340 pyrC -3.7 -2.6 dihydroorotase compare
LU632_RS07300 mlaA -3.7 -3.6 phospholipid-binding lipoprotein MlaA compare
LU632_RS16090 odhB -3.7 -1.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS13170 -3.7 -0.8 YoaH family protein compare
LU632_RS19610 argB -3.7 -2.1 acetylglutamate kinase compare
LU632_RS07775 aroC -3.7 -2.6 chorismate synthase compare
LU632_RS19605 -3.7 -4.4 argininosuccinate synthase compare
LU632_RS09245 -3.7 -2.5 L,D-transpeptidase family protein compare
LU632_RS08775 -3.7 -2.5 protein tyrosine phosphatase compare
LU632_RS20795 -3.7 -2.0 site-specific integrase compare
LU632_RS07965 -3.6 -3.5 NADH-quinone oxidoreductase subunit A compare
LU632_RS01015 purD -3.6 -2.5 phosphoribosylamine--glycine ligase compare
LU632_RS08940 hisC -3.6 -2.5 histidinol-phosphate transaminase compare
LU632_RS08275 purM -3.6 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS19780 -3.6 -6.0 amino acid ABC transporter permease compare
LU632_RS06610 crr -3.6 -2.0 PTS glucose transporter subunit IIA compare
LU632_RS22135 glnG -3.6 -2.5 nitrogen regulation protein NR(I) compare
LU632_RS05130 -3.5 -0.8 TIGR03750 family conjugal transfer protein compare
LU632_RS08945 hisD -3.5 -2.4 histidinol dehydrogenase compare
LU632_RS08920 hisF -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS08770 -3.4 -2.4 polysaccharide export protein compare
LU632_RS24265 rhlB -3.4 -1.8 ATP-dependent RNA helicase RhlB compare
LU632_RS21365 mdh -3.4 -4.1 malate dehydrogenase compare
LU632_RS08025 nuoN -3.4 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS12940 purU -3.4 -12.6 formyltetrahydrofolate deformylase compare
LU632_RS14010 ldcA -3.4 -2.3 muramoyltetrapeptide carboxypeptidase compare
LU632_RS15250 purK -3.3 -2.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS08335 -3.3 -1.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS08015 nuoL -3.3 -3.2 NADH-quinone oxidoreductase subunit L compare
LU632_RS24270 gppA -3.2 -1.5 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS19600 argH -3.2 -7.5 argininosuccinate lyase compare
LU632_RS09795 aroA -3.2 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS08925 hisA -3.2 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS07685 -3.2 -0.7 helix-turn-helix domain-containing protein compare
LU632_RS06040 lysA -3.2 -5.7 diaminopimelate decarboxylase compare
LU632_RS01510 -3.2 -1.5 hypothetical protein compare
LU632_RS02910 rsmH -3.1 -8.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS01085 -3.1 -2.3 class I SAM-dependent methyltransferase compare
LU632_RS08800 -3.1 -1.5 glycosyltransferase compare
LU632_RS18995 proC -3.1 -1.7 pyrroline-5-carboxylate reductase compare
LU632_RS03545 -3.1 -1.0 hypothetical protein compare
LU632_RS04280 araD -3.1 -10.5 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS17035 -3.1 -0.7 DinI family protein compare
LU632_RS15445 tyrA -3.1 -9.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS22960 feoA -3.1 -0.7 ferrous iron transporter A compare
LU632_RS19620 argE -3.1 -2.1 acetylornithine deacetylase compare
LU632_RS04250 yiaK -3.1 -3.9 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS21345 -3.1 -10.1 cell division protein ZapE compare
LU632_RS08850 rfbB -3.0 -2.0 dTDP-glucose 4,6-dehydratase compare
LU632_RS23985 tatB -3.0 -3.4 Sec-independent protein translocase protein TatB compare
LU632_RS19770 -3.0 -5.7 amino acid ABC transporter substrate-binding protein compare
LU632_RS02880 leuA -3.0 -9.2 2-isopropylmalate synthase compare
LU632_RS07970 -3.0 -7.3 NADH-quinone oxidoreductase subunit B compare
LU632_RS04710 -3.0 -0.9 IS110 family transposase compare
LU632_RS16120 -3.0 -12.9 citrate synthase compare
LU632_RS08005 nuoJ -3.0 -2.1 NADH-quinone oxidoreductase subunit J compare
LU632_RS19665 ftsN -3.0 -3.5 cell division protein FtsN compare
LU632_RS07990 nuoG -3.0 -6.9 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS14855 rluC -3.0 -4.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
LU632_RS24405 -2.9 -8.7 branched-chain amino acid transaminase compare
LU632_RS04275 -2.9 -6.2 L-ribulose-5-phosphate 3-epimerase compare
LU632_RS25465 -2.9 -1.6 hypothetical protein compare
LU632_RS14735 -2.9 -4.9 glycine zipper 2TM domain-containing protein compare
LU632_RS07045 -2.9 -0.9 hypothetical protein compare
LU632_RS14835 plsX -2.9 -3.6 phosphate acyltransferase PlsX compare
LU632_RS24840 kup -2.9 -6.1 low affinity potassium transporter Kup compare
LU632_RS08010 nuoK -2.9 -2.0 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS14570 -2.9 -1.6 NUDIX hydrolase compare
LU632_RS16095 sucA -2.8 -1.9 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS02555 nadR -2.8 -7.2 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
LU632_RS10270 -2.8 -1.5 glucan biosynthesis protein G compare
LU632_RS16415 tatE -2.8 -0.6 twin-arginine translocase subunit TatE compare
LU632_RS20545 metC -2.7 -8.7 cystathionine beta-lyase compare
LU632_RS19785 -2.7 -4.2 amino acid ABC transporter ATP-binding protein compare
LU632_RS12910 -2.7 -1.9 NAD-dependent epimerase compare
LU632_RS24250 wecA -2.7 -13.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS17830 -2.7 -1.6 MgtC/SapB family protein compare
LU632_RS22015 pyrE -2.7 -1.9 orotate phosphoribosyltransferase compare
LU632_RS02210 yraP -2.7 -3.8 divisome-associated lipoprotein YraP compare
LU632_RS06410 -2.7 -1.2 phosphoadenylyl-sulfate reductase compare
LU632_RS07090 -2.7 -1.0 Rz1 family lipoprotein compare
LU632_RS06210 argA -2.7 -4.1 amino-acid N-acetyltransferase compare
LU632_RS22940 ompR -2.7 -1.8 two-component system response regulator OmpR compare
LU632_RS07980 nuoE -2.6 -1.2 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS10690 -2.6 -1.6 hypothetical protein compare
LU632_RS16285 -2.6 -0.8 tRNA-Met compare
LU632_RS12500 pyrF -2.5 -3.7 orotidine-5'-phosphate decarboxylase compare
LU632_RS16575 -2.5 -2.1 hypothetical protein compare
LU632_RS21930 -2.5 -7.9 glycosyltransferase compare
LU632_RS03300 -2.5 -12.1 carbohydrate porin compare
LU632_RS02140 -2.5 -2.4 ribosome-associated protein compare
LU632_RS01020 purH -2.5 -1.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS22090 -2.5 -1.1 pyocin activator PrtN family protein compare
LU632_RS20805 -2.5 -0.8 AlpA family transcriptional regulator compare
LU632_RS23875 dsbA -2.5 -0.9 thiol:disulfide interchange protein DsbA compare
LU632_RS12450 -2.5 -2.4 helix-turn-helix domain-containing protein compare
LU632_RS08260 ppk1 -2.5 -6.9 polyphosphate kinase 1 compare
LU632_RS17645 -2.5 -0.8 hypothetical protein compare
LU632_RS13675 -2.5 -0.8 tRNA-Ser compare
LU632_RS22445 aroE -2.4 -3.1 shikimate dehydrogenase compare
LU632_RS10250 -2.4 -0.9 phospholipase D family protein compare
LU632_RS08020 nuoM -2.4 -5.0 NADH-quinone oxidoreductase subunit M compare
LU632_RS21895 envC -2.4 -9.2 murein hydrolase activator EnvC compare
LU632_RS09635 -2.4 -1.5 YbjN domain-containing protein compare
LU632_RS04600 -2.4 -0.9 hypothetical protein compare
LU632_RS18455 panE -2.3 -4.7 2-dehydropantoate 2-reductase compare
LU632_RS22865 aroB -2.3 -1.6 3-dehydroquinate synthase compare
LU632_RS11560 pspA -2.3 -2.2 phage shock protein PspA compare
LU632_RS16550 -2.3 -1.2 hypothetical protein compare
LU632_RS21445 mreC -2.3 -1.5 rod shape-determining protein MreC compare
LU632_RS11245 slyB -2.3 -2.6 outer membrane lipoprotein SlyB compare
LU632_RS01130 -2.3 -1.9 acyl-CoA dehydrogenase family protein compare
LU632_RS22935 envZ -2.3 -2.2 two-component system sensor histidine kinase EnvZ compare
LU632_RS04260 -2.3 -6.4 MFS transporter compare
LU632_RS17325 fruB -2.2 -8.2 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS17205 -2.2 -1.2 Arc family DNA-binding protein compare
LU632_RS24105 -2.2 -0.7 thioesterase family protein compare
LU632_RS12850 cls -2.2 -1.4 cardiolipin synthase compare
LU632_RS19815 gmhB -2.2 -1.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS24260 trxA -2.2 -2.7 thioredoxin TrxA compare
LU632_RS23835 -2.2 -2.4 helix-turn-helix domain-containing protein compare
LU632_RS02070 hflC -2.2 -1.4 protease modulator HflC compare
LU632_RS20175 -2.2 -0.8 hypothetical protein compare
LU632_RS02590 gpmB -2.2 -3.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
LU632_RS19640 metB -2.2 -7.0 cystathionine gamma-synthase compare
LU632_RS21880 secB -2.2 -2.7 protein-export chaperone SecB compare
LU632_RS19980 glnD -2.2 -1.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS20265 -2.2 -1.4 IS630 family transposase compare
LU632_RS24215 -2.2 -6.3 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
LU632_RS14745 -2.2 -0.8 IS5 family transposase compare
LU632_RS24400 ilvD -2.2 -7.6 dihydroxy-acid dehydratase compare
LU632_RS17745 -2.1 -2.2 IS481 family transposase compare
LU632_RS02615 thrB -2.1 -2.5 homoserine kinase compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments