Experiment set1S414 for Phocaeicola dorei CL03T12C01

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21075 -9.0 -6.2 tryptophan synthase subunit alpha compare
ABI39_RS12675 -8.8 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS20445 -7.5 -8.8 xylose isomerase compare
ABI39_RS04685 -7.4 -6.7 acetylglutamate kinase compare
ABI39_RS21065 -7.4 -10.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS19930 -7.3 -6.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10510 -7.3 -10.2 prephenate dehydratase compare
ABI39_RS10260 -7.3 -11.4 adenylosuccinate synthase compare
ABI39_RS04695 -6.8 -8.0 shikimate kinase compare
ABI39_RS14560 -6.8 -4.7 aspartate 1-decarboxylase compare
ABI39_RS02870 -6.8 -8.9 acetylornithine carbamoyltransferase compare
ABI39_RS02975 -6.7 -9.5 argininosuccinate synthase compare
ABI39_RS07790 -6.7 -8.1 M20 family metallo-hydrolase compare
ABI39_RS12715 -6.6 -12.8 dihydroxy-acid dehydratase compare
ABI39_RS10500 -6.5 -6.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS00475 -6.5 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS10495 -6.5 -10.7 prephenate dehydrogenase compare
ABI39_RS11845 -6.5 -7.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS07095 -6.5 -20.8 argininosuccinate lyase compare
ABI39_RS12665 -6.5 -7.7 shikimate dehydrogenase compare
ABI39_RS11835 -6.5 -7.7 histidinol dehydrogenase compare
ABI39_RS20450 -6.5 -11.6 carbohydrate kinase compare
ABI39_RS16905 -6.5 -14.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS00405 -6.5 -15.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10200 -6.4 -15.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02980 -6.4 -9.1 N-acetyltransferase compare
ABI39_RS04245 -6.3 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS21060 -6.3 -11.3 anthranilate phosphoribosyltransferase compare
ABI39_RS06055 -6.3 -9.6 phosphoribosylamine--glycine ligase compare
ABI39_RS00770 -6.2 -15.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS05660 -6.2 -11.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS06675 -6.2 -11.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10205 -6.1 -8.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02960 -6.1 -13.7 pyrroline-5-carboxylate reductase compare
ABI39_RS02875 -6.1 -12.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS11840 -6.0 -7.2 histidinol-phosphate transaminase compare
ABI39_RS02970 -6.0 -9.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS19925 -5.9 -9.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02315 -5.9 -10.7 IMP dehydrogenase compare
ABI39_RS02880 -5.8 -10.9 glutamate 5-kinase compare
ABI39_RS01300 -5.8 -13.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS12720 -5.8 -14.9 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS04795 -5.8 -4.0 M28 family peptidase compare
ABI39_RS19920 -5.7 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS16910 -5.7 -10.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS21045 -5.7 -8.4 tryptophan synthase subunit beta compare
ABI39_RS10195 -5.6 -10.6 2-isopropylmalate synthase compare
ABI39_RS10210 -5.6 -13.2 2-isopropylmalate synthase compare
ABI39_RS12645 -5.5 -13.0 chorismate synthase compare
ABI39_RS10440 -5.4 -11.3 threonine synthase compare
ABI39_RS10215 -5.4 -12.3 3-isopropylmalate dehydrogenase compare
ABI39_RS10430 -5.4 -14.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS09575 -5.4 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS18745 -5.4 -3.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS10505 -5.3 -14.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10435 -5.2 -11.7 cofactor-independent phosphoglycerate mutase compare
ABI39_RS07005 -5.2 -4.4 type II 3-dehydroquinate dehydratase compare
ABI39_RS12725 -5.1 -8.7 acetolactate synthase small subunit compare
ABI39_RS12735 -4.9 -8.0 ketol-acid reductoisomerase compare
ABI39_RS11405 -4.9 -11.8 hypothetical protein compare
ABI39_RS06670 -4.9 -17.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS08195 -4.9 -7.1 hypothetical protein compare
ABI39_RS17140 -4.8 -3.3 AAA family ATPase compare
ABI39_RS00205 -4.7 -3.3 phosphoglucosamine mutase compare
ABI39_RS17420 -4.6 -10.8 serine hydroxymethyltransferase compare
ABI39_RS10870 -4.5 -15.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS10640 -4.5 -12.7 serine dehydratase subunit alpha family protein compare
ABI39_RS19935 -4.4 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS17950 -4.4 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS17170 -4.4 -3.0 protein BatD compare
ABI39_RS08035 -4.4 -3.0 adenylosuccinate lyase compare
ABI39_RS04230 -4.3 -6.6 RNA polymerase factor sigma-54 compare
ABI39_RS06250 -4.3 -18.4 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS01360 -4.3 -10.4 hypothetical protein compare
ABI39_RS19950 -4.3 -2.9 diaminopimelate decarboxylase compare
ABI39_RS02500 -4.3 -11.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS05175 -4.3 -8.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS10110 -4.2 -14.8 S9 family peptidase compare
ABI39_RS11635 -4.1 -6.7 NUDIX hydrolase compare
ABI39_RS21050 -4.0 -8.9 anthranilate synthase component I family protein compare
ABI39_RS11830 -4.0 -5.4 ATP phosphoribosyltransferase compare
ABI39_RS04505 -3.7 -6.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS19945 -3.7 -11.5 aspartate kinase compare
ABI39_RS02965 -3.6 -12.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06995 -3.6 -9.2 tetratricopeptide repeat protein compare
ABI39_RS08305 -3.6 -6.8 DUF4831 family protein compare
ABI39_RS18330 -3.5 -12.7 PD40 domain-containing protein compare
ABI39_RS02755 -3.4 -4.7 glycosyltransferase compare
ABI39_RS04885 -3.4 -5.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS12955 -3.2 -6.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS17175 -3.2 -6.8 tetratricopeptide repeat protein compare
ABI39_RS17160 -3.1 -3.7 VWA domain-containing protein compare
ABI39_RS12755 -3.1 -3.7 SurA N-terminal domain-containing protein compare
ABI39_RS15415 -3.1 -5.7 hypothetical protein compare
ABI39_RS20455 -3.1 -5.7 NUDIX hydrolase compare
ABI39_RS17945 -3.1 -14.9 glutamine synthetase III compare
ABI39_RS04690 -3.0 -7.7 biosynthetic arginine decarboxylase compare
ABI39_RS06010 -3.0 -10.0 polysaccharide deacetylase family protein compare
ABI39_RS07090 -2.9 -2.4 hypothetical protein compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS09230 -2.8 -2.5 hypothetical protein compare
ABI39_RS09855 -2.7 -6.6 polyprenyl synthetase family protein compare
ABI39_RS17150 -2.7 -4.7 hypothetical protein compare
ABI39_RS13000 -2.7 -6.7 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS13185 -2.6 -3.2 manganese efflux pump compare
ABI39_RS16880 -2.6 -4.8 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17640 -2.5 -5.8 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS19385 -2.5 -4.7 hypothetical protein compare
ABI39_RS04700 -2.5 -4.0 type I DNA topoisomerase compare
ABI39_RS15410 -2.4 -5.1 DUF4296 domain-containing protein compare
ABI39_RS14030 -2.4 -4.8 MFS transporter compare
ABI39_RS17770 -2.4 -6.9 flavodoxin family protein compare
ABI39_RS19985 -2.3 -3.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12420 -2.3 -5.7 OadG family protein compare
ABI39_RS13180 -2.2 -5.8 FAD:protein FMN transferase compare
ABI39_RS18910 -2.2 -1.9 preprotein translocase subunit YajC compare
ABI39_RS06380 -2.2 -7.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS09195 -2.2 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS11545 -2.2 -7.3 hypothetical protein compare
ABI39_RS17795 -2.1 -9.6 thiamine phosphate synthase compare
ABI39_RS16895 -2.1 -3.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS20615 -2.1 -12.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS17750 -2.1 -6.1 thiamine phosphate synthase compare
ABI39_RS01650 -2.1 -6.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS20990 -2.0 -11.3 D-xylose transporter XylE conserved
ABI39_RS16885 -2.0 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS04280 -2.0 -5.2 DUF4292 domain-containing protein compare
ABI39_RS11670 -2.0 -3.0 molecular chaperone DnaJ compare
ABI39_RS06115 -2.0 -10.8 phosphatase PAP2 family protein compare
ABI39_RS00520 -2.0 -10.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS12670 -2.0 -6.8 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS09845 -2.0 -2.6 (d)CMP kinase compare
ABI39_RS01655 -2.0 -11.0 methylmalonyl-CoA mutase compare
ABI39_RS17775 -2.0 -11.2 2-iminoacetate synthase ThiH compare
ABI39_RS09515 -1.9 -4.9 nucleoside deaminase compare
ABI39_RS04860 -1.9 -1.6 HigA family addiction module antidote protein compare
ABI39_RS14250 -1.9 -6.7 8-amino-7-oxononanoate synthase compare
ABI39_RS16875 -1.9 -3.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS01725 -1.9 -5.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS17780 -1.9 -9.6 HesA/MoeB/ThiF family protein compare
ABI39_RS21055 -1.9 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS14245 -1.8 -10.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS12425 -1.8 -8.7 acyl-CoA carboxylase subunit beta compare
ABI39_RS12415 -1.8 -4.3 biotin/lipoyl-binding protein compare
ABI39_RS02470 -1.8 -4.3 ATP-dependent DNA helicase RecG compare
ABI39_RS04145 -1.8 -3.1 transcription elongation factor GreA compare
ABI39_RS12560 -1.7 -9.4 GGGtGRT protein compare
ABI39_RS14240 -1.7 -5.4 biotin synthase BioB compare
ABI39_RS14260 -1.7 -9.9 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS18740 -1.7 -6.4 ATP-binding protein compare
ABI39_RS17745 -1.7 -1.5 sulfur carrier protein ThiS compare
ABI39_RS11940 -1.7 -10.2 saccharopine dehydrogenase family protein compare
ABI39_RS12770 -1.6 -3.0 hypothetical protein compare
ABI39_RS14265 -1.6 -9.2 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS14465 -1.6 -8.6 hypothetical protein compare
ABI39_RS20965 -1.6 -1.4 SPOR domain-containing protein compare
ABI39_RS12565 -1.6 -3.9 hypothetical protein compare
ABI39_RS12945 -1.6 -3.0 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS04970 -1.6 -4.8 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS05450 -1.6 -4.2 redox-regulated ATPase YchF compare
ABI39_RS18300 -1.6 -4.4 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS17765 -1.5 -2.9 hypothetical protein compare
ABI39_RS17755 -1.5 -4.5 thiazole synthase compare
ABI39_RS10650 -1.5 -9.9 AraC family transcriptional regulator compare
ABI39_RS00410 -1.5 -2.9 response regulator compare
ABI39_RS16870 -1.4 -3.0 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS14255 -1.4 -4.3 DUF452 family protein compare
ABI39_RS03880 -1.4 -10.3 PDZ domain-containing protein compare
ABI39_RS02745 -1.4 -5.7 DUF59 domain-containing protein compare
ABI39_RS06920 -1.4 -6.9 glycosyltransferase compare
ABI39_RS01325 -1.4 -8.3 phosphoenolpyruvate synthase compare
ABI39_RS16695 -1.4 -8.3 carbon-nitrogen hydrolase compare
ABI39_RS00515 -1.4 -2.6 hypothetical protein compare
ABI39_RS13845 -1.4 -1.5 histone H1 compare
ABI39_RS08850 -1.4 -5.4 toprim domain-containing protein compare
ABI39_RS11735 -1.4 -4.3 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS00090 -1.4 -3.8 HAMP domain-containing histidine kinase compare
ABI39_RS01735 -1.3 -5.8 acyl-CoA dehydrogenase family protein compare
ABI39_RS15760 -1.3 -2.3 hypothetical protein compare
ABI39_RS04285 -1.3 -5.8 tetratricopeptide repeat protein compare
ABI39_RS17730 -1.3 -7.5 carboxynorspermidine decarboxylase compare
ABI39_RS20930 -1.3 -8.4 tetratricopeptide repeat protein compare
ABI39_RS09850 -1.3 -4.0 energy transducer TonB compare
ABI39_RS01730 -1.3 -4.7 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS06060 -1.3 -3.6 S9 family peptidase compare
ABI39_RS03160 -1.3 -2.3 helix-turn-helix domain-containing protein compare
ABI39_RS15320 -1.3 -9.0 PorT family protein compare
ABI39_RS11930 -1.2 -3.5 recombinase RecA compare
ABI39_RS10250 -1.2 -4.0 DNA alkylation repair protein compare
ABI39_RS02985 -1.2 -3.1 arginine repressor compare
ABI39_RS06050 -1.2 -3.1 hypothetical protein compare
ABI39_RS12150 -1.2 -4.4 hotdog fold thioesterase compare
ABI39_RS07010 -1.2 -2.4 pyruvate kinase compare
ABI39_RS04930 -1.2 -2.3 helix-turn-helix transcriptional regulator compare
ABI39_RS17205 -1.1 -2.5 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06925 -1.1 -8.8 glycosyltransferase compare
ABI39_RS15360 -1.1 -4.3 Na+/H+ antiporter NhaC family protein compare
ABI39_RS14235 -1.1 -3.5 hypothetical protein compare
ABI39_RS19915 -1.1 -5.2 formyltetrahydrofolate deformylase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Xylose in Phocaeicola dorei CL03T12C01

For carbon source D-Xylose across organisms