Experiment set1S413 for Phocaeicola dorei CL03T12C01

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02980 -9.1 -8.8 N-acetyltransferase compare
ABI39_RS04685 -8.3 -6.4 acetylglutamate kinase compare
ABI39_RS16910 -7.9 -9.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS02970 -7.6 -10.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02975 -7.4 -11.0 argininosuccinate synthase compare
ABI39_RS20450 -7.4 -10.2 carbohydrate kinase compare
ABI39_RS10510 -7.3 -11.2 prephenate dehydratase compare
ABI39_RS19925 -7.2 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS20445 -7.2 -9.8 xylose isomerase compare
ABI39_RS19930 -7.0 -6.4 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS07095 -6.9 -19.9 argininosuccinate lyase compare
ABI39_RS12675 -6.8 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS21045 -6.7 -6.5 tryptophan synthase subunit beta compare
ABI39_RS00475 -6.6 -6.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS11835 -6.5 -7.8 histidinol dehydrogenase compare
ABI39_RS10500 -6.5 -6.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS07790 -6.5 -10.3 M20 family metallo-hydrolase compare
ABI39_RS11830 -6.4 -6.3 ATP phosphoribosyltransferase compare
ABI39_RS00405 -6.4 -16.3 phosphoribosylformylglycinamidine synthase compare
ABI39_RS16905 -6.3 -14.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21075 -6.3 -6.9 tryptophan synthase subunit alpha compare
ABI39_RS10200 -6.2 -16.2 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12715 -6.2 -13.6 dihydroxy-acid dehydratase compare
ABI39_RS06675 -6.2 -9.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02880 -6.2 -9.0 glutamate 5-kinase compare
ABI39_RS12665 -6.1 -8.4 shikimate dehydrogenase compare
ABI39_RS02875 -6.1 -11.0 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02315 -6.1 -10.1 IMP dehydrogenase compare
ABI39_RS10430 -6.0 -15.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS00770 -5.8 -14.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10260 -5.8 -9.3 adenylosuccinate synthase compare
ABI39_RS12735 -5.8 -11.1 ketol-acid reductoisomerase compare
ABI39_RS12725 -5.8 -6.6 acetolactate synthase small subunit compare
ABI39_RS12720 -5.7 -15.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS04795 -5.7 -3.9 M28 family peptidase compare
ABI39_RS21065 -5.7 -7.3 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10215 -5.7 -12.5 3-isopropylmalate dehydrogenase compare
ABI39_RS12645 -5.7 -14.7 chorismate synthase compare
ABI39_RS02960 -5.6 -12.9 pyrroline-5-carboxylate reductase compare
ABI39_RS10505 -5.6 -12.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11405 -5.5 -11.7 hypothetical protein compare
ABI39_RS10195 -5.4 -10.0 2-isopropylmalate synthase compare
ABI39_RS06055 -5.4 -9.1 phosphoribosylamine--glycine ligase compare
ABI39_RS11840 -5.3 -7.3 histidinol-phosphate transaminase compare
ABI39_RS10435 -5.3 -13.7 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10205 -5.3 -7.1 3-isopropylmalate dehydratase small subunit compare
ABI39_RS04695 -5.2 -5.9 shikimate kinase compare
ABI39_RS07005 -5.2 -6.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS19935 -5.2 -8.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS11845 -5.2 -11.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02870 -5.2 -9.0 acetylornithine carbamoyltransferase compare
ABI39_RS06995 -5.2 -10.4 tetratricopeptide repeat protein compare
ABI39_RS05660 -5.1 -10.4 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10495 -5.1 -9.7 prephenate dehydrogenase compare
ABI39_RS14560 -5.1 -4.9 aspartate 1-decarboxylase compare
ABI39_RS10440 -5.0 -10.9 threonine synthase compare
ABI39_RS01300 -5.0 -10.5 NADP-specific glutamate dehydrogenase compare
ABI39_RS21060 -4.9 -7.8 anthranilate phosphoribosyltransferase compare
ABI39_RS09575 -4.8 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11635 -4.8 -6.9 NUDIX hydrolase compare
ABI39_RS10210 -4.8 -11.7 2-isopropylmalate synthase compare
ABI39_RS06670 -4.7 -14.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS19920 -4.7 -8.1 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS04245 -4.6 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS21050 -4.6 -7.1 anthranilate synthase component I family protein compare
ABI39_RS19985 -4.6 -4.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS17420 -4.5 -8.8 serine hydroxymethyltransferase compare
ABI39_RS18745 -4.4 -7.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS10640 -4.4 -14.1 serine dehydratase subunit alpha family protein compare
ABI39_RS01360 -4.4 -8.7 hypothetical protein compare
ABI39_RS17950 -4.4 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS04230 -4.4 -6.6 RNA polymerase factor sigma-54 compare
ABI39_RS08035 -4.3 -3.0 adenylosuccinate lyase compare
ABI39_RS02755 -4.3 -3.0 glycosyltransferase compare
ABI39_RS10110 -4.3 -13.8 S9 family peptidase compare
ABI39_RS19950 -4.3 -2.9 diaminopimelate decarboxylase compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS12955 -4.1 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS17140 -4.1 -4.0 AAA family ATPase compare
ABI39_RS00205 -4.1 -4.8 phosphoglucosamine mutase compare
ABI39_RS17160 -4.0 -2.8 VWA domain-containing protein compare
ABI39_RS17175 -3.9 -7.4 tetratricopeptide repeat protein compare
ABI39_RS08195 -3.9 -5.8 hypothetical protein compare
ABI39_RS04885 -3.9 -4.6 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10870 -3.8 -14.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS02500 -3.8 -10.7 pyridoxine 5'-phosphate synthase compare
ABI39_RS18330 -3.6 -13.4 PD40 domain-containing protein compare
ABI39_RS17170 -3.5 -4.2 protein BatD compare
ABI39_RS06250 -3.5 -17.9 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS19945 -3.5 -12.2 aspartate kinase compare
ABI39_RS05175 -3.4 -6.8 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS20455 -3.4 -4.9 NUDIX hydrolase compare
ABI39_RS04505 -3.4 -6.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS02965 -3.3 -16.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS08305 -3.2 -7.9 DUF4831 family protein compare
ABI39_RS12755 -3.1 -3.7 SurA N-terminal domain-containing protein compare
ABI39_RS16870 -3.1 -5.1 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS17150 -3.0 -5.7 hypothetical protein compare
ABI39_RS16885 -3.0 -4.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS17945 -2.9 -12.8 glutamine synthetase III compare
ABI39_RS04690 -2.9 -8.2 biosynthetic arginine decarboxylase compare
ABI39_RS09845 -2.8 -2.7 (d)CMP kinase compare
ABI39_RS09855 -2.8 -5.3 polyprenyl synthetase family protein compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS07090 -2.8 -2.0 hypothetical protein compare
ABI39_RS04700 -2.8 -3.7 type I DNA topoisomerase compare
ABI39_RS06010 -2.8 -11.3 polysaccharide deacetylase family protein compare
ABI39_RS17640 -2.7 -5.8 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS15415 -2.6 -5.6 hypothetical protein compare
ABI39_RS17755 -2.5 -5.1 thiazole synthase compare
ABI39_RS06380 -2.5 -6.6 GH3 auxin-responsive promoter family protein compare
ABI39_RS14030 -2.4 -5.8 MFS transporter compare
ABI39_RS20615 -2.4 -13.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS16880 -2.4 -4.8 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17775 -2.4 -10.0 2-iminoacetate synthase ThiH compare
ABI39_RS18910 -2.2 -1.9 preprotein translocase subunit YajC compare
ABI39_RS16875 -2.2 -3.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS13185 -2.2 -2.7 manganese efflux pump compare
ABI39_RS15410 -2.2 -4.6 DUF4296 domain-containing protein compare
ABI39_RS06115 -2.2 -9.4 phosphatase PAP2 family protein compare
ABI39_RS19385 -2.1 -2.9 hypothetical protein compare
ABI39_RS15265 -2.1 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS00515 -2.1 -2.6 hypothetical protein compare
ABI39_RS17750 -2.0 -6.8 thiamine phosphate synthase compare
ABI39_RS12425 -2.0 -11.3 acyl-CoA carboxylase subunit beta compare
ABI39_RS13000 -2.0 -4.4 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS17780 -2.0 -9.3 HesA/MoeB/ThiF family protein compare
ABI39_RS01655 -1.9 -9.5 methylmalonyl-CoA mutase compare
ABI39_RS14250 -1.9 -8.1 8-amino-7-oxononanoate synthase compare
ABI39_RS01725 -1.9 -5.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS12420 -1.9 -5.7 OadG family protein compare
ABI39_RS12415 -1.9 -5.9 biotin/lipoyl-binding protein compare
ABI39_RS07010 -1.9 -3.0 pyruvate kinase compare
ABI39_RS17795 -1.9 -8.9 thiamine phosphate synthase compare
ABI39_RS14235 -1.8 -4.6 hypothetical protein compare
ABI39_RS13180 -1.8 -5.0 FAD:protein FMN transferase compare
ABI39_RS18740 -1.8 -6.5 ATP-binding protein compare
ABI39_RS01650 -1.8 -9.1 methylmalonyl-CoA mutase small subunit compare
ABI39_RS00520 -1.8 -9.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS11670 -1.8 -2.9 molecular chaperone DnaJ compare
ABI39_RS09515 -1.8 -3.8 nucleoside deaminase compare
ABI39_RS00090 -1.8 -4.7 HAMP domain-containing histidine kinase compare
ABI39_RS14245 -1.8 -12.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS08850 -1.8 -6.0 toprim domain-containing protein compare
ABI39_RS20990 -1.7 -10.2 D-xylose transporter XylE conserved
ABI39_RS17205 -1.7 -3.1 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS14260 -1.7 -10.3 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS12670 -1.7 -5.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS14265 -1.7 -9.3 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS16895 -1.7 -3.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS11545 -1.7 -6.7 hypothetical protein compare
ABI39_RS04280 -1.6 -3.7 DUF4292 domain-containing protein compare
ABI39_RS02985 -1.6 -4.3 arginine repressor compare
ABI39_RS14240 -1.6 -4.6 biotin synthase BioB compare
ABI39_RS00410 -1.6 -2.9 response regulator compare
ABI39_RS12560 -1.6 -8.0 GGGtGRT protein compare
ABI39_RS12945 -1.5 -2.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS09195 -1.5 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS06920 -1.5 -5.6 glycosyltransferase compare
ABI39_RS14465 -1.5 -6.6 hypothetical protein compare
ABI39_RS10650 -1.5 -10.0 AraC family transcriptional regulator compare
ABI39_RS05450 -1.5 -4.1 redox-regulated ATPase YchF compare
ABI39_RS01325 -1.5 -7.6 phosphoenolpyruvate synthase compare
ABI39_RS11940 -1.5 -8.9 saccharopine dehydrogenase family protein compare
ABI39_RS09230 -1.4 -2.7 hypothetical protein compare
ABI39_RS17770 -1.4 -2.1 flavodoxin family protein compare
ABI39_RS03880 -1.4 -11.0 PDZ domain-containing protein compare
ABI39_RS02470 -1.4 -4.4 ATP-dependent DNA helicase RecG compare
ABI39_RS14255 -1.4 -4.0 DUF452 family protein compare
ABI39_RS02745 -1.4 -6.4 DUF59 domain-containing protein compare
ABI39_RS04930 -1.4 -2.4 helix-turn-helix transcriptional regulator compare
ABI39_RS20930 -1.4 -9.1 tetratricopeptide repeat protein compare
ABI39_RS04285 -1.4 -6.6 tetratricopeptide repeat protein compare
ABI39_RS12150 -1.4 -5.3 hotdog fold thioesterase compare
ABI39_RS06060 -1.3 -3.8 S9 family peptidase compare
ABI39_RS13225 -1.3 -2.4 phosphopyruvate hydratase compare
ABI39_RS21055 -1.3 -4.4 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS12565 -1.3 -4.8 hypothetical protein compare
ABI39_RS01735 -1.3 -5.1 acyl-CoA dehydrogenase family protein compare
ABI39_RS06050 -1.3 -2.9 hypothetical protein compare
ABI39_RS04970 -1.2 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS19915 -1.2 -7.1 formyltetrahydrofolate deformylase compare
ABI39_RS01730 -1.2 -5.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS16695 -1.2 -7.2 carbon-nitrogen hydrolase compare
ABI39_RS17765 -1.2 -2.4 hypothetical protein compare
ABI39_RS17745 -1.2 -1.9 sulfur carrier protein ThiS compare
ABI39_RS12770 -1.2 -2.4 hypothetical protein compare
ABI39_RS04145 -1.2 -2.3 transcription elongation factor GreA compare
ABI39_RS02140 -1.2 -2.9 TetR/AcrR family transcriptional regulator compare
ABI39_RS15585 -1.1 -1.9 hypothetical protein compare
ABI39_RS16620 -1.1 -1.2 phage integrase SAM-like domain-containing protein compare
ABI39_RS11735 -1.1 -3.3 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS12730 -1.1 -2.6 acyl-ACP thioesterase compare
ABI39_RS09245 -1.1 -7.6 cardiolipin synthase compare
ABI39_RS14510 -1.1 -3.7 3'-5' exonuclease compare
ABI39_RS12980 -1.1 -2.6 HAD family hydrolase compare
ABI39_RS18300 -1.1 -3.6 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS13150 -1.1 -6.6 S41 family peptidase compare
ABI39_RS15320 -1.1 -5.9 PorT family protein compare
ABI39_RS02290 -1.1 -1.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Xylose in Phocaeicola dorei CL03T12C01

For carbon source D-Xylose across organisms