Experiment set1S41 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06197 +1.3 1.8 hypothetical protein compare
MPMX19_05798 +1.0 2.6 HTH-type transcriptional repressor NanR compare
MPMX19_05176 +1.0 2.3 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_05725 +1.0 2.6 hypothetical protein compare
MPMX19_00297 +1.0 1.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_04205 +0.9 3.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03916 +0.8 2.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_06315 +0.8 2.2 ISL3 family transposase ISAli18 compare
MPMX19_01479 +0.8 4.0 hypothetical protein compare
MPMX19_03866 +0.8 2.0 Ribose import permease protein RbsC compare
MPMX19_02275 +0.8 2.4 hypothetical protein compare
MPMX19_06887 +0.8 2.4 Adenine deaminase compare
MPMX19_04079 +0.8 2.1 hypothetical protein compare
MPMX19_00577 +0.8 3.8 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_04842 +0.8 2.6 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
MPMX19_05534 +0.7 1.0 DNA gyrase inhibitor YacG compare
MPMX19_03195 +0.7 1.5 hypothetical protein compare
MPMX19_06989 +0.7 2.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_01643 +0.7 4.0 hypothetical protein compare
MPMX19_06488 +0.7 1.1 Taurine-binding periplasmic protein compare
MPMX19_04682 +0.7 1.6 hypothetical protein compare
MPMX19_06193 +0.7 1.3 Flagellar hook-basal body complex protein FliE compare
MPMX19_03934 +0.7 1.3 hypothetical protein compare
MPMX19_05333 +0.7 1.8 Thymidine phosphorylase compare
MPMX19_03939 +0.7 2.1 Enoyl-CoA-hydratase compare
MPMX19_04726 +0.7 1.7 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_01708 +0.7 1.8 hypothetical protein compare
MPMX19_04484 +0.7 3.0 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX19_03825 +0.7 1.4 IS5 family transposase IS4811 compare
MPMX19_06752 +0.7 2.4 hypothetical protein compare
MPMX19_01401 +0.6 1.8 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_00074 +0.6 2.1 Electron transfer flavoprotein subunit beta compare
MPMX19_05656 +0.6 1.9 HTH-type transcriptional activator RhaR compare
MPMX19_05690 +0.6 4.2 Protein phosphotransferase ChpT compare
MPMX19_00414 +0.6 2.0 Pyruvate dehydrogenase complex repressor compare
MPMX19_02250 +0.6 3.9 hypothetical protein compare
MPMX19_03724 +0.6 1.0 hypothetical protein compare
MPMX19_03846 +0.6 2.3 hypothetical protein compare
MPMX19_02532 +0.6 1.1 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_06874 +0.6 2.1 hypothetical protein compare
MPMX19_02031 +0.6 1.5 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_03123 +0.6 1.5 Citrate lyase acyl carrier protein compare
MPMX19_00212 +0.6 4.9 Nitrogen fixation regulation protein FixK compare
MPMX19_05254 +0.6 1.4 Carbon monoxide dehydrogenase small chain compare
MPMX19_02511 +0.6 1.6 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_02136 +0.6 0.7 Phage shock protein A compare
MPMX19_03423 +0.6 1.9 hypothetical protein compare
MPMX19_04246 +0.6 2.3 hypothetical protein compare
MPMX19_03631 +0.6 1.3 hypothetical protein compare
MPMX19_00211 +0.6 2.2 putative copper-importing P-type ATPase A compare
MPMX19_04633 +0.6 2.1 hypothetical protein compare
MPMX19_02149 +0.6 1.3 hypothetical protein compare
MPMX19_06510 +0.6 1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06924 +0.6 2.2 hypothetical protein compare
MPMX19_04635 +0.6 2.6 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_06904 +0.6 1.8 putative tautomerase compare
MPMX19_00186 +0.6 0.9 hypothetical protein compare
MPMX19_05173 +0.6 2.1 hypothetical protein compare
MPMX19_04549 +0.5 2.3 L-cystine-binding protein FliY compare
MPMX19_04743 +0.5 2.0 Formyltransferase/hydrolase complex subunit D compare
MPMX19_06888 +0.5 2.0 hypothetical protein compare
MPMX19_00334 +0.5 1.5 hypothetical protein compare
MPMX19_03816 +0.5 1.5 hypothetical protein compare
MPMX19_04088 +0.5 2.5 Signal recognition particle 54 kDa protein compare
MPMX19_06255 +0.5 2.0 hypothetical protein compare
MPMX19_00320 +0.5 1.4 hypothetical protein compare
MPMX19_04095 +0.5 2.1 hypothetical protein compare
MPMX19_03112 +0.5 2.5 Ribonuclease BN compare
MPMX19_03636 +0.5 1.8 Octopine permease ATP-binding protein P compare
MPMX19_00773 +0.5 2.0 hypothetical protein compare
MPMX19_03707 +0.5 1.7 L-cystine import ATP-binding protein TcyC compare
MPMX19_04087 +0.5 2.0 Flagellum site-determining protein YlxH compare
MPMX19_00515 +0.5 3.5 hypothetical protein compare
MPMX19_03937 +0.5 1.7 Acyl-CoA dehydrogenase compare
MPMX19_06207 +0.5 1.4 hypothetical protein compare
MPMX19_05342 +0.5 2.1 hypothetical protein compare
MPMX19_05623 +0.5 2.2 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_03972 +0.5 1.6 Enolase compare
MPMX19_03800 +0.5 1.3 hypothetical protein compare
MPMX19_04670 +0.5 2.3 hypothetical protein compare
MPMX19_00719 +0.5 2.5 Protein ElaA compare
MPMX19_05604 +0.5 3.1 hypothetical protein compare
MPMX19_06917 +0.5 1.5 HTH-type transcriptional regulator PgrR compare
MPMX19_05011 +0.5 2.0 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_02792 +0.5 2.3 HTH-type transcriptional regulator KipR compare
MPMX19_05269 +0.5 2.5 hypothetical protein compare
MPMX19_03369 +0.5 1.5 hypothetical protein compare
MPMX19_05697 +0.5 1.7 hypothetical protein compare
MPMX19_03710 +0.5 1.7 Glycine cleavage system transcriptional activator compare
MPMX19_02021 +0.5 2.0 Anti-sigma-E factor ChrR compare
MPMX19_06460 +0.5 1.3 DNA-invertase hin compare
MPMX19_04531 +0.5 1.7 hypothetical protein compare
MPMX19_05622 +0.5 3.6 Sensor histidine kinase RegB compare
MPMX19_00362 +0.5 1.8 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06783 +0.5 2.1 5-keto-D-gluconate 5-reductase compare
MPMX19_02679 +0.5 1.7 hypothetical protein compare
MPMX19_01964 +0.5 1.0 hypothetical protein compare
MPMX19_03617 +0.5 1.8 hypothetical protein compare
MPMX19_03127 +0.5 1.9 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_01870 +0.5 2.0 hypothetical protein compare
MPMX19_01385 +0.5 2.4 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_02444 +0.5 2.1 hypothetical protein compare
MPMX19_04738 +0.5 1.4 hypothetical protein compare
MPMX19_01454 +0.5 1.3 hypothetical protein compare
MPMX19_00423 +0.5 1.9 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_04494 +0.5 2.6 p-hydroxybenzoic acid efflux pump subunit AaeA compare
MPMX19_06478 +0.5 2.1 hypothetical protein compare
MPMX19_01376 +0.5 1.3 hypothetical protein compare
MPMX19_00543 +0.5 1.3 Molybdenum cofactor guanylyltransferase compare
MPMX19_00492 +0.5 1.8 Cobalamin biosynthesis protein CbiB compare
MPMX19_01244 +0.5 1.5 hypothetical protein compare
MPMX19_00576 +0.5 1.2 hypothetical protein compare
MPMX19_00095 +0.5 2.9 ATP-dependent RNA helicase HrpB compare
MPMX19_00875 +0.5 1.6 hypothetical protein compare
MPMX19_04354 +0.5 1.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_03320 +0.5 1.4 hypothetical protein compare
MPMX19_04975 +0.5 1.8 hypothetical protein compare
MPMX19_02041 +0.4 1.1 Protein YciI compare
MPMX19_06395 +0.4 1.7 Inner membrane protein YqaA compare
MPMX19_03072 +0.4 0.9 hypothetical protein compare
MPMX19_01621 +0.4 2.4 hypothetical protein compare
MPMX19_06121 +0.4 2.1 hypothetical protein compare
MPMX19_03924 +0.4 1.3 hypothetical protein compare
MPMX19_06422 +0.4 1.6 hypothetical protein compare
MPMX19_06979 +0.4 1.1 hypothetical protein compare
MPMX19_03396 +0.4 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00166 +0.4 0.8 hypothetical protein compare
MPMX19_03450 +0.4 1.0 hypothetical protein compare
MPMX19_05178 +0.4 1.8 Alkanesulfonate monooxygenase compare
MPMX19_04590 +0.4 2.8 Nitrate import ATP-binding protein NrtD compare
MPMX19_03400 +0.4 2.1 hypothetical protein compare
MPMX19_04094 +0.4 3.3 Flagellar M-ring protein compare
MPMX19_06513 +0.4 2.6 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_04648 +0.4 1.3 hypothetical protein compare
MPMX19_00256 +0.4 1.7 hypothetical protein compare
MPMX19_01907 +0.4 2.9 hypothetical protein compare
MPMX19_01503 +0.4 1.3 hypothetical protein compare
MPMX19_05459 +0.4 1.0 hypothetical protein compare
MPMX19_04204 +0.4 2.9 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_06646 +0.4 1.9 hypothetical protein compare
MPMX19_02398 +0.4 3.1 hypothetical protein compare
MPMX19_01062 +0.4 1.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00809 +0.4 1.9 Autoinducer 2 sensor kinase/phosphatase LuxQ compare
MPMX19_00664 +0.4 1.5 hypothetical protein compare
MPMX19_02085 +0.4 1.5 hypothetical protein compare
MPMX19_02426 +0.4 2.7 hypothetical protein compare
MPMX19_00852 +0.4 1.1 hypothetical protein compare
MPMX19_06746 +0.4 1.1 Chemotaxis protein CheW compare
MPMX19_00318 +0.4 1.9 hypothetical protein compare
MPMX19_03011 +0.4 1.5 hypothetical protein compare
MPMX19_04090 +0.4 3.1 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_04323 +0.4 1.4 Segregation and condensation protein B compare
MPMX19_00858 +0.4 2.0 Flagellar biosynthetic protein FliP compare
MPMX19_04392 +0.4 1.2 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_03509 +0.4 1.6 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic compare
MPMX19_01622 +0.4 1.9 hypothetical protein compare
MPMX19_03699 +0.4 1.1 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_04692 +0.4 1.3 hypothetical protein compare
MPMX19_01482 +0.4 3.1 hypothetical protein compare
MPMX19_03462 +0.4 1.6 Acetate CoA-transferase subunit alpha compare
MPMX19_01864 +0.4 0.8 Regulatory protein AtoC compare
MPMX19_04644 +0.4 1.0 hypothetical protein compare
MPMX19_03907 +0.4 1.8 Short-chain-enoyl-CoA hydratase compare
MPMX19_05538 +0.4 2.5 hypothetical protein compare
MPMX19_00758 +0.4 2.3 putative protein YqeY compare
MPMX19_03265 +0.4 2.5 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_04092 +0.4 2.5 Flagellar motor switch protein FliN compare
MPMX19_03901 +0.4 1.8 Glyoxylate/hydroxypyruvate reductase B compare
MPMX19_06830 +0.4 2.0 Maleate isomerase compare
MPMX19_01255 +0.4 1.9 Sulfur carrier protein TusA compare
MPMX19_03795 +0.4 2.1 hypothetical protein compare
MPMX19_01056 +0.4 2.4 hypothetical protein compare
MPMX19_06405 +0.4 1.9 hypothetical protein compare
MPMX19_04551 +0.4 0.8 HTH-type transcriptional repressor RspR compare
MPMX19_03342 +0.4 1.1 hypothetical protein compare
MPMX19_01095 +0.4 2.6 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_06471 +0.4 1.6 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03900 +0.4 1.7 Hca operon transcriptional activator HcaR compare
MPMX19_02804 +0.4 1.1 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_05878 +0.4 2.3 L-cystine-binding protein FliY compare
MPMX19_00046 +0.4 0.9 hypothetical protein compare
MPMX19_04257 +0.4 2.4 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase compare
MPMX19_04678 +0.4 2.2 hypothetical protein compare
MPMX19_05782 +0.4 2.4 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_05324 +0.4 2.5 hypothetical protein compare
MPMX19_05139 +0.4 1.1 CRISPR-associated endoribonuclease Cas2 compare
MPMX19_01451 +0.4 2.5 Regulator of RpoS compare
MPMX19_04768 +0.4 2.3 Apulose-4-phosphate transketolase subunit A compare
MPMX19_03026 +0.4 1.6 Fructose import ATP-binding protein FrcA compare
MPMX19_06858 +0.4 2.8 Acetophenone carboxylase gamma subunit compare
MPMX19_04740 +0.4 1.3 hypothetical protein compare
MPMX19_03048 +0.4 1.5 hypothetical protein compare
MPMX19_05487 +0.4 2.4 hypothetical protein compare
MPMX19_04501 +0.4 1.1 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03287 +0.4 2.1 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_02047 +0.4 2.3 hypothetical protein compare
MPMX19_01446 +0.4 1.9 Secretory immunoglobulin A-binding protein EsiB compare
MPMX19_00206 +0.4 2.7 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_01445 +0.4 1.5 hypothetical protein compare
MPMX19_05022 +0.4 2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms