Experiment set1S409 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

200 most important genes:

  gene name fitness t score description  
LU632_RS19275 ftsE -8.0 -3.0 cell division ATP-binding protein FtsE compare
LU632_RS23980 tatC -7.2 -5.0 Sec-independent protein translocase subunit TatC compare
LU632_RS15245 purE -6.6 -2.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS16115 sdhC -6.0 -3.7 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS21235 mlaD -5.9 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS22140 glnL -5.5 -3.8 nitrogen regulation protein NR(II) compare
LU632_RS25495 -5.3 -1.0 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS08885 -5.3 -4.5 ABC transporter ATP-binding protein compare
LU632_RS09955 pyrD -5.3 -3.6 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08785 -5.1 -3.5 glycosyltransferase family 2 protein compare
LU632_RS09475 mntR -5.1 -2.1 manganese-binding transcriptional regulator MntR compare
LU632_RS06615 ptsI -5.1 -3.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS21755 -5.1 -6.1 adenylosuccinate synthase compare
LU632_RS08880 -5.0 -2.6 ABC transporter permease compare
LU632_RS16110 sdhD -5.0 -5.9 succinate dehydrogenase membrane anchor subunit compare
LU632_RS07865 purF -4.9 -9.4 amidophosphoribosyltransferase compare
LU632_RS05960 sdhE -4.8 -2.2 FAD assembly factor SdhE compare
LU632_RS08815 -4.8 -2.6 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS15425 rpoE -4.7 -8.0 RNA polymerase sigma factor RpoE compare
LU632_RS02875 leuB -4.6 -5.5 3-isopropylmalate dehydrogenase compare
LU632_RS04250 yiaK -4.5 -3.1 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS02865 leuD -4.5 -5.5 3-isopropylmalate dehydratase small subunit compare
LU632_RS08790 -4.5 -5.2 EpsG family protein compare
LU632_RS19615 argC -4.5 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS20950 pyrB -4.5 -4.4 aspartate carbamoyltransferase compare
LU632_RS02880 leuA -4.4 -6.0 2-isopropylmalate synthase compare
LU632_RS02750 carB -4.3 -4.2 carbamoyl-phosphate synthase large subunit compare
LU632_RS14960 -4.3 -1.2 FAD-binding oxidoreductase compare
LU632_RS02870 leuC -4.3 -5.1 3-isopropylmalate dehydratase large subunit compare
LU632_RS08915 hisIE -4.3 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS22810 -4.2 -6.5 aspartate aminotransferase family protein compare
LU632_RS10340 pyrC -4.2 -2.9 dihydroorotase compare
LU632_RS01085 -4.2 -2.0 class I SAM-dependent methyltransferase compare
LU632_RS17615 -4.2 -2.1 YejL family protein compare
LU632_RS16090 odhB -4.2 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS06635 zipA -4.2 -1.7 cell division protein ZipA compare
LU632_RS00165 -4.2 -1.4 IS6 family transposase compare
LU632_RS02100 -4.1 -8.8 hemolysin family protein compare
LU632_RS19610 argB -4.1 -2.0 acetylglutamate kinase compare
LU632_RS08820 -4.1 -2.8 lipopolysaccharide biosynthesis protein compare
LU632_RS22135 glnG -4.1 -2.8 nitrogen regulation protein NR(I) compare
LU632_RS25375 -4.0 -1.3 hypothetical protein compare
LU632_RS08775 -4.0 -2.6 protein tyrosine phosphatase compare
LU632_RS06610 crr -4.0 -1.9 PTS glucose transporter subunit IIA compare
LU632_RS21230 mlaC -4.0 -6.0 phospholipid-binding protein MlaC compare
LU632_RS06040 lysA -4.0 -6.1 diaminopimelate decarboxylase compare
LU632_RS01180 -4.0 -0.8 hypothetical protein compare
LU632_RS08275 purM -4.0 -2.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS19605 -4.0 -5.3 argininosuccinate synthase compare
LU632_RS21240 mlaE -3.9 -4.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS07995 nuoH -3.9 -3.0 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS08000 nuoI -3.9 -3.2 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS14010 ldcA -3.9 -2.6 muramoyltetrapeptide carboxypeptidase compare
LU632_RS21245 mlaF -3.9 -7.8 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS12500 pyrF -3.9 -4.6 orotidine-5'-phosphate decarboxylase compare
LU632_RS17975 purL -3.8 -14.8 phosphoribosylformylglycinamidine synthase compare
LU632_RS08780 wzc -3.8 -6.9 tyrosine-protein kinase Wzc compare
LU632_RS08770 -3.8 -2.6 polysaccharide export protein compare
LU632_RS20590 -3.8 -1.0 antibiotic biosynthesis monooxygenase compare
LU632_RS08935 hisB -3.8 -5.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS02140 -3.8 -1.4 ribosome-associated protein compare
LU632_RS19270 ftsX -3.7 -11.9 permease-like cell division protein FtsX compare
LU632_RS19585 sthA -3.7 -9.0 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS03310 -3.7 -11.5 sucrose-6-phosphate hydrolase compare
LU632_RS20900 argF -3.7 -6.6 ornithine carbamoyltransferase compare
LU632_RS08335 -3.7 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS21360 degS -3.6 -10.4 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS08925 hisA -3.6 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS16100 -3.6 -3.9 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS16105 sdhA -3.6 -8.3 succinate dehydrogenase flavoprotein subunit compare
LU632_RS15250 purK -3.6 -3.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS18995 proC -3.5 -1.6 pyrroline-5-carboxylate reductase compare
LU632_RS21365 mdh -3.5 -5.4 malate dehydrogenase compare
LU632_RS23985 tatB -3.5 -3.5 Sec-independent protein translocase protein TatB compare
LU632_RS08800 -3.5 -1.4 glycosyltransferase compare
LU632_RS24405 -3.5 -8.4 branched-chain amino acid transaminase compare
LU632_RS08930 hisH -3.4 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS08850 rfbB -3.4 -1.9 dTDP-glucose 4,6-dehydratase compare
LU632_RS03600 lysB -3.4 -2.1 Rz-like lysis system protein LysB compare
LU632_RS19930 rseP -3.4 -6.2 sigma E protease regulator RseP compare
LU632_RS08945 hisD -3.4 -4.6 histidinol dehydrogenase compare
LU632_RS19620 argE -3.4 -3.3 acetylornithine deacetylase compare
LU632_RS02860 -3.4 -2.9 hypothetical protein compare
LU632_RS06825 -3.3 -0.9 hypothetical protein compare
LU632_RS07985 nuoF -3.3 -6.6 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS05025 -3.3 -0.6 TIGR03749 family integrating conjugative element protein compare
LU632_RS07975 nuoC -3.3 -9.7 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS07775 aroC -3.3 -3.1 chorismate synthase compare
LU632_RS13085 dsbB -3.3 -4.3 disulfide bond formation protein DsbB compare
LU632_RS24260 trxA -3.3 -2.5 thioredoxin TrxA compare
LU632_RS01000 hupA -3.3 -2.3 DNA-binding protein HU-alpha compare
LU632_RS10270 -3.2 -1.5 glucan biosynthesis protein G compare
LU632_RS16095 sucA -3.2 -2.2 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS04270 ulaD -3.2 -4.6 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS20695 bacA -3.2 -3.8 undecaprenyl-diphosphate phosphatase compare
LU632_RS07300 mlaA -3.2 -6.8 phospholipid-binding lipoprotein MlaA compare
LU632_RS08950 hisG -3.2 -7.6 ATP phosphoribosyltransferase compare
LU632_RS19775 -3.2 -10.3 amino acid ABC transporter permease compare
LU632_RS11470 asr -3.2 -1.9 acid resistance repetitive basic protein Asr compare
LU632_RS08010 nuoK -3.2 -2.1 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS07965 -3.2 -5.4 NADH-quinone oxidoreductase subunit A compare
LU632_RS21345 -3.2 -10.3 cell division protein ZapE compare
LU632_RS08920 hisF -3.2 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS16850 -3.2 -2.4 MFS transporter compare
LU632_RS06410 -3.1 -1.2 phosphoadenylyl-sulfate reductase compare
LU632_RS19785 -3.1 -5.6 amino acid ABC transporter ATP-binding protein compare
LU632_RS00695 -3.1 -0.6 fimbria/pilus periplasmic chaperone compare
LU632_RS16415 tatE -3.1 -0.6 twin-arginine translocase subunit TatE compare
LU632_RS19600 argH -3.1 -9.6 argininosuccinate lyase compare
LU632_RS01015 purD -3.1 -5.0 phosphoribosylamine--glycine ligase compare
LU632_RS21225 mlaB -3.0 -5.0 lipid asymmetry maintenance protein MlaB compare
LU632_RS07990 nuoG -3.0 -7.3 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS22015 pyrE -3.0 -2.9 orotate phosphoribosyltransferase compare
LU632_RS04390 -3.0 -0.8 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS16120 -3.0 -13.7 citrate synthase compare
LU632_RS02755 carA -3.0 -6.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS16480 -3.0 -5.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS14735 -2.9 -5.1 glycine zipper 2TM domain-containing protein compare
LU632_RS19770 -2.9 -8.0 amino acid ABC transporter substrate-binding protein compare
LU632_RS05855 serA -2.9 -8.7 phosphoglycerate dehydrogenase compare
LU632_RS08805 -2.9 -10.2 phage tailspike protein compare
LU632_RS09245 -2.9 -4.3 L,D-transpeptidase family protein compare
LU632_RS05210 -2.9 -1.1 TIGR03757 family integrating conjugative element protein compare
LU632_RS01020 purH -2.9 -2.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS08015 nuoL -2.8 -8.2 NADH-quinone oxidoreductase subunit L compare
LU632_RS02465 -2.8 -0.5 IS256 family transposase compare
LU632_RS24840 kup -2.8 -8.3 low affinity potassium transporter Kup compare
LU632_RS13675 -2.8 -0.7 tRNA-Ser compare
LU632_RS04255 -2.8 -2.3 YhcH/YjgK/YiaL family protein compare
LU632_RS12560 -2.8 -0.7 DUF2498 family protein compare
LU632_RS19665 ftsN -2.8 -4.0 cell division protein FtsN compare
LU632_RS11790 -2.8 -0.7 DUF2313 domain-containing protein compare
LU632_RS04810 -2.7 -0.7 hypothetical protein compare
LU632_RS08020 nuoM -2.7 -6.3 NADH-quinone oxidoreductase subunit M compare
LU632_RS18590 nrdR -2.7 -1.4 transcriptional regulator NrdR compare
LU632_RS08940 hisC -2.7 -8.6 histidinol-phosphate transaminase compare
LU632_RS21085 secG -2.7 -1.5 preprotein translocase subunit SecG compare
LU632_RS21445 mreC -2.7 -1.7 rod shape-determining protein MreC compare
LU632_RS16250 nagA -2.7 -4.7 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS25820 -2.7 -1.2 hypothetical protein compare
LU632_RS23215 -2.6 -0.5 VirK/YbjX family protein compare
LU632_RS13115 minC -2.6 -5.9 septum site-determining protein MinC compare
LU632_RS02615 thrB -2.6 -3.1 homoserine kinase compare
LU632_RS12850 cls -2.6 -1.4 cardiolipin synthase compare
LU632_RS05130 -2.6 -0.7 TIGR03750 family conjugal transfer protein compare
LU632_RS19815 gmhB -2.6 -1.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS04275 -2.6 -3.9 L-ribulose-5-phosphate 3-epimerase compare
LU632_RS19980 glnD -2.6 -1.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS17785 bamB -2.5 -3.5 outer membrane protein assembly factor BamB compare
LU632_RS17420 -2.5 -0.8 phosphatidylinositol-specific phospholipase C domain-containing protein compare
LU632_RS24105 -2.5 -0.7 thioesterase family protein compare
LU632_RS17325 fruB -2.5 -6.2 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS02545 serB -2.5 -1.7 phosphoserine phosphatase compare
LU632_RS04140 -2.5 -0.7 terminase family protein compare
LU632_RS07740 -2.5 -1.6 phage transcriptional regulator compare
LU632_RS06210 argA -2.5 -4.5 amino-acid N-acetyltransferase compare
LU632_RS21875 gpsA -2.5 -6.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS23720 -2.5 -2.1 Lrp/AsnC family transcriptional regulator compare
LU632_RS07955 -2.5 -11.2 pyridoxal phosphate-dependent aminotransferase compare
LU632_RS11095 -2.5 -0.7 transposase zinc-binding domain-containing protein compare
LU632_RS02050 miaA -2.5 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS25020 -2.4 -0.8 hypothetical protein compare
LU632_RS16555 -2.4 -1.3 hypothetical protein compare
LU632_RS09795 aroA -2.4 -9.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS02065 hflK -2.4 -1.3 FtsH protease activity modulator HflK compare
LU632_RS08025 nuoN -2.4 -5.7 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS21955 -2.4 -1.1 glycosyltransferase family 4 protein compare
LU632_RS08005 nuoJ -2.4 -5.3 NADH-quinone oxidoreductase subunit J compare
LU632_RS02070 hflC -2.4 -1.8 protease modulator HflC compare
LU632_RS12925 rssB -2.4 -1.0 two-component system response regulator RssB compare
LU632_RS12940 purU -2.4 -11.0 formyltetrahydrofolate deformylase compare
LU632_RS24250 wecA -2.3 -7.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS20810 -2.3 -1.4 DUF6387 family protein compare
LU632_RS19780 -2.3 -6.6 amino acid ABC transporter permease compare
LU632_RS17830 -2.3 -1.1 MgtC/SapB family protein compare
LU632_RS09745 -2.3 -0.8 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS19360 -2.3 -0.8 hypothetical protein compare
LU632_RS00895 tuf -2.3 -5.4 elongation factor Tu compare
LU632_RS22940 ompR -2.3 -3.9 two-component system response regulator OmpR compare
LU632_RS01190 proA -2.3 -6.3 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS23310 gltP -2.2 -0.6 glutamate/aspartate:proton symporter GltP compare
LU632_RS10360 -2.2 -1.2 hypothetical protein compare
LU632_RS15510 -2.2 -2.7 putative phage tail assembly chaperone compare
LU632_RS24205 rffM -2.2 -8.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS24230 rffC -2.2 -4.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
LU632_RS24155 -2.2 -0.8 class I adenylate cyclase compare
LU632_RS07970 -2.2 -6.7 NADH-quinone oxidoreductase subunit B compare
LU632_RS18500 tgt -2.2 -2.8 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS10275 mdoH -2.2 -1.5 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS17320 fruK -2.2 -2.8 1-phosphofructokinase compare
LU632_RS16880 -2.2 -0.7 DTW domain-containing protein compare
LU632_RS00455 sctW -2.2 -1.5 type III secretion system gatekeeper subunit SctW compare
LU632_RS17035 -2.1 -0.6 DinI family protein compare
LU632_RS08280 upp -2.1 -1.5 uracil phosphoribosyltransferase compare
LU632_RS09915 ompC -2.1 -4.1 porin OmpC compare
LU632_RS21710 rplI -2.1 -1.8 50S ribosomal protein L9 compare
LU632_RS08060 -2.1 -0.8 phage protease compare
LU632_RS05320 -2.1 -0.6 hypothetical protein compare
LU632_RS23360 -2.1 -3.4 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS02060 hflX -2.1 -3.5 GTPase HflX compare


Specific Phenotypes

For 2 genes in this experiment