Experiment set1S406 for Phocaeicola dorei CL03T12C01

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS08235 -7.9 -10.6 carbohydrate kinase compare
ABI39_RS14225 -7.6 -9.1 glycosyltransferase compare
ABI39_RS04695 -7.6 -7.4 shikimate kinase compare
ABI39_RS02970 -7.3 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02975 -7.3 -10.9 argininosuccinate synthase compare
ABI39_RS12665 -7.0 -4.9 shikimate dehydrogenase compare
ABI39_RS10495 -7.0 -9.6 prephenate dehydrogenase compare
ABI39_RS00475 -6.9 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS12645 -6.7 -14.5 chorismate synthase compare
ABI39_RS14230 -6.7 -13.2 alpha-amylase compare
ABI39_RS14560 -6.5 -4.5 aspartate 1-decarboxylase compare
ABI39_RS02870 -6.5 -7.4 acetylornithine carbamoyltransferase compare
ABI39_RS16910 -6.4 -11.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS10260 -6.4 -11.5 adenylosuccinate synthase compare
ABI39_RS02980 -6.3 -10.4 N-acetyltransferase compare
ABI39_RS21065 -6.3 -9.6 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10205 -6.3 -5.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS06055 -6.3 -9.6 phosphoribosylamine--glycine ligase compare
ABI39_RS04245 -6.2 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10200 -6.2 -17.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS19935 -6.2 -10.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10215 -6.1 -12.0 3-isopropylmalate dehydrogenase compare
ABI39_RS21075 -6.1 -9.3 tryptophan synthase subunit alpha compare
ABI39_RS02875 -6.0 -11.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10510 -6.0 -8.8 prephenate dehydratase compare
ABI39_RS12720 -6.0 -15.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS00405 -6.0 -16.6 phosphoribosylformylglycinamidine synthase compare
ABI39_RS12735 -6.0 -10.7 ketol-acid reductoisomerase compare
ABI39_RS11845 -5.9 -9.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02960 -5.9 -14.8 pyrroline-5-carboxylate reductase compare
ABI39_RS06675 -5.9 -9.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10500 -5.9 -7.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10440 -5.9 -7.4 threonine synthase compare
ABI39_RS17420 -5.8 -9.5 serine hydroxymethyltransferase compare
ABI39_RS10435 -5.8 -12.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS04685 -5.7 -6.5 acetylglutamate kinase compare
ABI39_RS02315 -5.7 -10.2 IMP dehydrogenase compare
ABI39_RS07095 -5.7 -19.7 argininosuccinate lyase compare
ABI39_RS16905 -5.7 -12.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21060 -5.6 -10.2 anthranilate phosphoribosyltransferase compare
ABI39_RS19925 -5.6 -10.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10430 -5.5 -13.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS06250 -5.4 -14.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS00770 -5.4 -18.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12675 -5.4 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS05660 -5.3 -9.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS09575 -5.3 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11835 -5.3 -8.3 histidinol dehydrogenase compare
ABI39_RS21050 -5.3 -8.6 anthranilate synthase component I family protein compare
ABI39_RS19930 -5.2 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS12715 -5.2 -12.8 dihydroxy-acid dehydratase compare
ABI39_RS21045 -5.2 -7.9 tryptophan synthase subunit beta compare
ABI39_RS17315 -5.0 -13.4 alpha amylase C-terminal domain-containing protein compare
ABI39_RS06670 -5.0 -16.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS07790 -5.0 -10.9 M20 family metallo-hydrolase compare
ABI39_RS02880 -4.9 -8.3 glutamate 5-kinase compare
ABI39_RS01300 -4.9 -13.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS11840 -4.8 -7.1 histidinol-phosphate transaminase compare
ABI39_RS02965 -4.8 -15.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02500 -4.8 -9.4 pyridoxine 5'-phosphate synthase compare
ABI39_RS05450 -4.8 -5.6 redox-regulated ATPase YchF compare
ABI39_RS10870 -4.8 -13.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS05175 -4.8 -8.8 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS10210 -4.7 -11.1 2-isopropylmalate synthase compare
ABI39_RS07005 -4.7 -6.9 type II 3-dehydroquinate dehydratase compare
ABI39_RS11830 -4.6 -7.0 ATP phosphoribosyltransferase compare
ABI39_RS00205 -4.6 -3.2 phosphoglucosamine mutase compare
ABI39_RS10640 -4.5 -12.4 serine dehydratase subunit alpha family protein compare
ABI39_RS10505 -4.4 -10.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04860 -4.4 -6.0 HigA family addiction module antidote protein compare
ABI39_RS08240 -4.4 -17.2 substrate-binding domain-containing protein compare
ABI39_RS14150 -4.4 -16.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS19920 -4.2 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS19985 -4.2 -3.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10195 -4.2 -6.2 2-isopropylmalate synthase compare
ABI39_RS04795 -4.1 -3.0 M28 family peptidase compare
ABI39_RS19950 -4.1 -2.8 diaminopimelate decarboxylase compare
ABI39_RS12955 -4.0 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS04505 -3.9 -7.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS17140 -3.8 -3.7 AAA family ATPase compare
ABI39_RS08230 -3.8 -10.3 MFS transporter compare
ABI39_RS08035 -3.8 -3.7 adenylosuccinate lyase compare
ABI39_RS18745 -3.8 -7.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS02755 -3.7 -3.6 glycosyltransferase compare
ABI39_RS10110 -3.7 -11.9 S9 family peptidase compare
ABI39_RS01360 -3.7 -9.3 hypothetical protein compare
ABI39_RS17170 -3.6 -3.5 protein BatD compare
ABI39_RS17945 -3.5 -14.0 glutamine synthetase III compare
ABI39_RS04700 -3.4 -3.3 type I DNA topoisomerase compare
ABI39_RS04230 -3.3 -6.4 RNA polymerase factor sigma-54 compare
ABI39_RS19945 -3.3 -8.7 aspartate kinase compare
ABI39_RS17160 -3.3 -3.2 VWA domain-containing protein compare
ABI39_RS19385 -3.3 -4.6 hypothetical protein compare
ABI39_RS12980 -3.3 -3.9 HAD family hydrolase compare
ABI39_RS01415 -3.2 -3.8 branched-chain amino acid aminotransferase compare
ABI39_RS06995 -3.2 -8.8 tetratricopeptide repeat protein compare
ABI39_RS17950 -3.2 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS12725 -3.1 -3.3 acetolactate synthase small subunit compare
ABI39_RS08195 -3.1 -7.0 hypothetical protein compare
ABI39_RS18330 -3.1 -10.4 PD40 domain-containing protein compare
ABI39_RS04885 -3.1 -5.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS08305 -3.0 -6.5 DUF4831 family protein compare
ABI39_RS14220 -3.0 -7.6 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS04690 -2.9 -8.6 biosynthetic arginine decarboxylase compare
ABI39_RS12560 -2.9 -10.1 GGGtGRT protein compare
ABI39_RS07010 -2.9 -3.3 pyruvate kinase compare
ABI39_RS12565 -2.8 -5.2 hypothetical protein compare
ABI39_RS09195 -2.8 -3.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS12755 -2.8 -3.8 SurA N-terminal domain-containing protein compare
ABI39_RS16305 -2.7 -1.8 DUF4141 domain-containing protein compare
ABI39_RS08175 -2.7 -3.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS08180 -2.6 -13.4 anaerobic ribonucleoside triphosphate reductase compare
ABI39_RS21350 -2.6 -1.8 aspartate--ammonia ligase compare
ABI39_RS02985 -2.6 -7.3 arginine repressor compare
ABI39_RS17640 -2.4 -5.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS07090 -2.4 -1.7 hypothetical protein compare
ABI39_RS20175 -2.4 -3.8 translation elongation factor 4 compare
ABI39_RS00520 -2.3 -7.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS15415 -2.3 -6.2 hypothetical protein compare
ABI39_RS17320 -2.2 -2.3 YhcH/YjgK/YiaL family protein compare
ABI39_RS17745 -2.2 -2.4 sulfur carrier protein ThiS compare
ABI39_RS19915 -2.2 -11.2 formyltetrahydrofolate deformylase compare
ABI39_RS10650 -2.1 -11.1 AraC family transcriptional regulator compare
ABI39_RS18160 -2.1 -10.6 MFS transporter compare
ABI39_RS09845 -2.1 -2.4 (d)CMP kinase compare
ABI39_RS17775 -2.1 -8.2 2-iminoacetate synthase ThiH compare
ABI39_RS20615 -2.0 -9.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS17750 -2.0 -5.1 thiamine phosphate synthase compare
ABI39_RS13000 -2.0 -4.4 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS09855 -2.0 -4.2 polyprenyl synthetase family protein compare
ABI39_RS08145 -2.0 -2.7 DUF4290 domain-containing protein compare
ABI39_RS17150 -1.9 -3.1 hypothetical protein compare
ABI39_RS17795 -1.9 -8.3 thiamine phosphate synthase compare
ABI39_RS17175 -1.9 -4.3 tetratricopeptide repeat protein compare
ABI39_RS06115 -1.9 -8.9 phosphatase PAP2 family protein compare
ABI39_RS17780 -1.9 -6.2 HesA/MoeB/ThiF family protein compare
ABI39_RS13180 -1.9 -5.3 FAD:protein FMN transferase compare
ABI39_RS09835 -1.9 -7.6 6-phosphofructokinase compare
ABI39_RS15855 -1.8 -2.8 helix-turn-helix transcriptional regulator compare
ABI39_RS02355 -1.8 -5.6 ABC transporter ATP-binding protein compare
ABI39_RS09285 -1.8 -2.2 hypothetical protein compare
ABI39_RS02350 -1.8 -5.9 ABC transporter permease compare
ABI39_RS15840 -1.7 -3.1 hypothetical protein compare
ABI39_RS09670 -1.7 -1.9 cardiolipin synthase compare
ABI39_RS02470 -1.6 -4.9 ATP-dependent DNA helicase RecG compare
ABI39_RS12965 -1.6 -5.9 hypothetical protein compare
ABI39_RS00050 -1.6 -5.4 hypothetical protein compare
ABI39_RS17755 -1.5 -2.7 thiazole synthase compare
ABI39_RS21055 -1.5 -5.0 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS01325 -1.5 -7.8 phosphoenolpyruvate synthase compare
ABI39_RS12970 -1.5 -6.9 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS17205 -1.5 -2.5 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS08165 -1.4 -2.2 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS18165 -1.4 -1.8 DUF5024 domain-containing protein compare
ABI39_RS14085 -1.4 -1.6 hypothetical protein compare
ABI39_RS15410 -1.4 -4.5 DUF4296 domain-containing protein compare
ABI39_RS11670 -1.4 -2.5 molecular chaperone DnaJ compare
ABI39_RS11940 -1.3 -8.5 saccharopine dehydrogenase family protein compare
ABI39_RS16500 -1.3 -7.1 redoxin domain-containing protein compare
ABI39_RS03830 -1.3 -1.3 ribosome-associated translation inhibitor RaiA compare
ABI39_RS06050 -1.3 -3.0 hypothetical protein compare
ABI39_RS18740 -1.3 -5.1 ATP-binding protein compare
ABI39_RS04970 -1.3 -3.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS12945 -1.3 -1.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS06060 -1.3 -3.7 S9 family peptidase compare
ABI39_RS02480 -1.2 -1.8 DJ-1/PfpI family protein compare
ABI39_RS12805 -1.2 -2.7 hypothetical protein compare
ABI39_RS16880 -1.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS14255 -1.2 -2.6 DUF452 family protein compare
ABI39_RS17760 -1.2 -5.9 phosphomethylpyrimidine synthase ThiC compare
ABI39_RS15835 -1.2 -3.9 hypothetical protein compare
ABI39_RS06065 -1.1 -1.3 RNA methyltransferase compare
ABI39_RS17770 -1.1 -2.4 flavodoxin family protein compare
ABI39_RS20360 -1.1 -3.4 phosphate signaling complex protein PhoU compare
ABI39_RS02375 -1.1 -2.7 DUF177 domain-containing protein compare
ABI39_RS09960 -1.1 -3.8 NADP-dependent isocitrate dehydrogenase compare
ABI39_RS12960 -1.1 -5.7 NDP-sugar synthase compare
ABI39_RS16870 -1.1 -2.2 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS01295 -1.1 -6.3 NADP-dependent malic enzyme compare
ABI39_RS08160 -1.1 -6.5 M23 family metallopeptidase compare
ABI39_RS00745 -1.1 -1.8 tRNA-Met compare
ABI39_RS11735 -1.0 -3.4 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS14265 -1.0 -3.8 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS09955 -1.0 -4.5 aconitate hydratase compare
ABI39_RS20220 -1.0 -2.8 DNA-binding protein compare
ABI39_RS00515 -1.0 -1.5 hypothetical protein compare
ABI39_RS07070 -1.0 -4.5 peptide chain release factor N(5)-glutamine methyltransferase compare
ABI39_RS17765 -1.0 -2.8 hypothetical protein compare
ABI39_RS11810 -1.0 -6.5 transglycosylase SLT domain-containing protein compare
ABI39_RS09685 -1.0 -1.0 hypothetical protein compare
ABI39_RS05650 -1.0 -5.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABI39_RS11000 -1.0 -1.4 hypothetical protein compare
ABI39_RS02725 -0.9 -5.6 CidA/LrgA family protein compare
ABI39_RS04930 -0.9 -2.5 helix-turn-helix transcriptional regulator compare
ABI39_RS13150 -0.9 -5.9 S41 family peptidase compare
ABI39_RS20070 -0.9 -3.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS09280 -0.9 -1.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
ABI39_RS14245 -0.9 -6.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS19775 -0.9 -1.1 tRNA-Met compare
ABI39_RS14260 -0.9 -4.5 malonyl-ACP O-methyltransferase BioC compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source D-Fructose across organisms