Experiment set1S404 for Phocaeicola dorei CL03T12C01

Compare to:

Red Arabinan from sugar-beet carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS12665 -6.3 -7.4 shikimate dehydrogenase compare
ABI39_RS21065 -6.2 -7.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10260 -6.0 -10.3 adenylosuccinate synthase compare
ABI39_RS11405 -6.0 -10.7 hypothetical protein compare
ABI39_RS10440 -5.9 -7.5 threonine synthase compare
ABI39_RS04695 -5.9 -7.3 shikimate kinase compare
ABI39_RS12725 -5.8 -7.2 acetolactate synthase small subunit compare
ABI39_RS02980 -5.8 -9.0 N-acetyltransferase compare
ABI39_RS04795 -5.7 -3.9 M28 family peptidase compare
ABI39_RS02975 -5.7 -13.0 argininosuccinate synthase compare
ABI39_RS10200 -5.7 -13.2 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02315 -5.6 -10.8 IMP dehydrogenase compare
ABI39_RS12645 -5.6 -12.8 chorismate synthase compare
ABI39_RS13185 -5.6 -3.8 manganese efflux pump compare
ABI39_RS21060 -5.6 -10.3 anthranilate phosphoribosyltransferase compare
ABI39_RS02960 -5.5 -12.2 pyrroline-5-carboxylate reductase compare
ABI39_RS07095 -5.5 -19.6 argininosuccinate lyase compare
ABI39_RS00475 -5.5 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02875 -5.4 -11.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS04230 -5.3 -3.7 RNA polymerase factor sigma-54 compare
ABI39_RS07790 -5.3 -9.3 M20 family metallo-hydrolase compare
ABI39_RS02880 -5.3 -12.0 glutamate 5-kinase compare
ABI39_RS10510 -5.3 -12.0 prephenate dehydratase compare
ABI39_RS02970 -5.2 -12.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS04685 -5.2 -8.3 acetylglutamate kinase compare
ABI39_RS06055 -5.2 -9.0 phosphoribosylamine--glycine ligase compare
ABI39_RS18745 -5.2 -3.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS21075 -5.2 -6.3 tryptophan synthase subunit alpha compare
ABI39_RS10495 -5.2 -8.3 prephenate dehydrogenase compare
ABI39_RS11630 -5.1 -7.1 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS00405 -5.1 -14.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10195 -5.1 -11.1 2-isopropylmalate synthase compare
ABI39_RS05660 -5.0 -12.1 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11845 -5.0 -9.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10430 -5.0 -14.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02870 -5.0 -10.4 acetylornithine carbamoyltransferase compare
ABI39_RS08195 -5.0 -6.4 hypothetical protein compare
ABI39_RS09685 -5.0 -3.4 hypothetical protein compare
ABI39_RS10435 -4.9 -12.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10210 -4.9 -12.1 2-isopropylmalate synthase compare
ABI39_RS00770 -4.8 -14.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS03005 -4.8 -9.6 rhamnulose-1-phosphate aldolase compare
ABI39_RS07005 -4.8 -6.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS12715 -4.8 -11.2 dihydroxy-acid dehydratase compare
ABI39_RS09575 -4.8 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS11840 -4.8 -8.0 histidinol-phosphate transaminase compare
ABI39_RS12720 -4.7 -13.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10505 -4.7 -13.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10205 -4.7 -7.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS00205 -4.6 -3.2 phosphoglucosamine mutase compare
ABI39_RS04245 -4.6 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS11830 -4.6 -7.0 ATP phosphoribosyltransferase compare
ABI39_RS17140 -4.6 -3.1 AAA family ATPase compare
ABI39_RS12770 -4.5 -3.1 hypothetical protein compare
ABI39_RS11670 -4.4 -3.0 molecular chaperone DnaJ compare
ABI39_RS12675 -4.4 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS16905 -4.4 -11.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS01360 -4.4 -9.1 hypothetical protein compare
ABI39_RS16910 -4.3 -10.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS10215 -4.3 -9.4 3-isopropylmalate dehydrogenase compare
ABI39_RS10870 -4.3 -13.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS10640 -4.3 -12.4 serine dehydratase subunit alpha family protein compare
ABI39_RS21050 -4.3 -6.6 anthranilate synthase component I family protein compare
ABI39_RS06675 -4.3 -9.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS06670 -4.3 -14.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS12735 -4.3 -10.8 ketol-acid reductoisomerase compare
ABI39_RS10500 -4.3 -7.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS06010 -4.2 -9.8 polysaccharide deacetylase family protein compare
ABI39_RS11835 -4.2 -6.2 histidinol dehydrogenase compare
ABI39_RS17950 -4.2 -2.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS17170 -4.2 -2.9 protein BatD compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS04505 -4.1 -6.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS19925 -4.1 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS21045 -4.0 -8.1 tryptophan synthase subunit beta compare
ABI39_RS14560 -4.0 -5.4 aspartate 1-decarboxylase compare
ABI39_RS18910 -3.9 -2.7 preprotein translocase subunit YajC compare
ABI39_RS01300 -3.8 -14.8 NADP-specific glutamate dehydrogenase compare
ABI39_RS19950 -3.8 -3.7 diaminopimelate decarboxylase compare
ABI39_RS10110 -3.8 -13.9 S9 family peptidase compare
ABI39_RS17175 -3.8 -6.8 tetratricopeptide repeat protein compare
ABI39_RS04885 -3.7 -5.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS20070 -3.7 -8.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS19920 -3.7 -6.1 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS17420 -3.7 -7.3 serine hydroxymethyltransferase compare
ABI39_RS02965 -3.6 -16.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS08035 -3.6 -4.3 adenylosuccinate lyase compare
ABI39_RS08305 -3.6 -10.4 DUF4831 family protein compare
ABI39_RS19935 -3.6 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS05175 -3.6 -10.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS11625 -3.6 -14.1 L-arabinose isomerase compare
ABI39_RS17150 -3.6 -4.8 hypothetical protein compare
ABI39_RS12955 -3.4 -5.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS06995 -3.4 -6.7 tetratricopeptide repeat protein compare
ABI39_RS17160 -3.4 -3.3 VWA domain-containing protein compare
ABI39_RS11620 -3.4 -12.7 FGGY-family carbohydrate kinase compare
ABI39_RS06250 -3.3 -11.9 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS19945 -3.3 -10.3 aspartate kinase compare
ABI39_RS19930 -3.3 -9.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS15380 -3.2 -4.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS11645 -3.2 -9.7 galactose mutarotase compare
ABI39_RS18330 -3.1 -11.1 PD40 domain-containing protein compare
ABI39_RS09855 -3.1 -5.9 polyprenyl synthetase family protein compare
ABI39_RS02500 -3.0 -10.5 pyridoxine 5'-phosphate synthase compare
ABI39_RS04700 -2.8 -4.7 type I DNA topoisomerase compare
ABI39_RS19985 -2.8 -2.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS15375 -2.7 -12.2 sugar kinase compare
ABI39_RS04690 -2.7 -9.3 biosynthetic arginine decarboxylase compare
ABI39_RS16875 -2.7 -4.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS15415 -2.7 -7.1 hypothetical protein compare
ABI39_RS07090 -2.7 -2.3 hypothetical protein compare
ABI39_RS16870 -2.7 -4.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS02755 -2.7 -3.6 glycosyltransferase compare
ABI39_RS09845 -2.7 -3.1 (d)CMP kinase compare
ABI39_RS21350 -2.7 -1.8 aspartate--ammonia ligase compare
ABI39_RS11640 -2.6 -11.0 sodium:solute symporter compare
ABI39_RS12755 -2.6 -3.9 SurA N-terminal domain-containing protein compare
ABI39_RS16895 -2.6 -3.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS15410 -2.5 -5.6 DUF4296 domain-containing protein compare
ABI39_RS22820 -2.5 -1.9 hypothetical protein compare
ABI39_RS09515 -2.5 -3.6 nucleoside deaminase compare
ABI39_RS14030 -2.3 -3.9 MFS transporter compare
ABI39_RS07010 -2.3 -3.5 pyruvate kinase compare
ABI39_RS04930 -2.3 -3.3 helix-turn-helix transcriptional regulator compare
ABI39_RS17755 -2.3 -3.8 thiazole synthase compare
ABI39_RS17195 -2.3 -10.3 hypothetical protein compare
ABI39_RS13000 -2.3 -5.2 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS12425 -2.2 -9.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS17945 -2.2 -10.7 glutamine synthetase III compare
ABI39_RS16880 -2.2 -4.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17640 -2.2 -5.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS21055 -2.2 -5.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS12415 -2.1 -6.5 biotin/lipoyl-binding protein compare
ABI39_RS05450 -2.1 -4.3 redox-regulated ATPase YchF compare
ABI39_RS17775 -2.1 -11.0 2-iminoacetate synthase ThiH compare
ABI39_RS09850 -2.1 -4.6 energy transducer TonB compare
ABI39_RS12565 -2.0 -6.8 hypothetical protein compare
ABI39_RS02470 -2.0 -5.1 ATP-dependent DNA helicase RecG compare
ABI39_RS20615 -2.0 -8.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS14230 -1.9 -12.1 alpha-amylase compare
ABI39_RS12420 -1.9 -6.9 OadG family protein compare
ABI39_RS02290 -1.8 -4.1 hypothetical protein compare
ABI39_RS16885 -1.8 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS17750 -1.8 -4.9 thiamine phosphate synthase compare
ABI39_RS04970 -1.8 -5.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS02985 -1.8 -5.1 arginine repressor compare
ABI39_RS01655 -1.8 -8.6 methylmalonyl-CoA mutase compare
ABI39_RS00520 -1.7 -8.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS06380 -1.7 -6.8 GH3 auxin-responsive promoter family protein compare
ABI39_RS09195 -1.7 -2.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS13180 -1.7 -5.2 FAD:protein FMN transferase compare
ABI39_RS17745 -1.7 -2.0 sulfur carrier protein ThiS compare
ABI39_RS04280 -1.7 -4.4 DUF4292 domain-containing protein compare
ABI39_RS11655 -1.6 -3.5 MFS transporter compare
ABI39_RS11545 -1.6 -5.8 hypothetical protein compare
ABI39_RS17465 -1.6 -8.2 DUF3078 domain-containing protein compare
ABI39_RS11635 -1.6 -1.8 NUDIX hydrolase compare
ABI39_RS04860 -1.6 -1.8 HigA family addiction module antidote protein compare
ABI39_RS19385 -1.6 -3.3 hypothetical protein compare
ABI39_RS00515 -1.6 -2.6 hypothetical protein compare
ABI39_RS15365 -1.6 -3.1 altronate dehydratase compare
ABI39_RS08850 -1.5 -4.1 toprim domain-containing protein compare
ABI39_RS12430 -1.5 -1.6 methylmalonyl-CoA epimerase compare
ABI39_RS12560 -1.5 -6.8 GGGtGRT protein compare
ABI39_RS14225 -1.5 -8.4 glycosyltransferase compare
ABI39_RS12670 -1.5 -5.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS15320 -1.5 -8.8 PorT family protein compare
ABI39_RS00410 -1.5 -2.9 response regulator compare
ABI39_RS01650 -1.5 -6.5 methylmalonyl-CoA mutase small subunit compare
ABI39_RS09230 -1.5 -2.6 hypothetical protein compare
ABI39_RS09670 -1.4 -1.7 cardiolipin synthase compare
ABI39_RS17770 -1.4 -3.3 flavodoxin family protein compare
ABI39_RS06115 -1.4 -8.4 phosphatase PAP2 family protein compare
ABI39_RS17780 -1.4 -5.7 HesA/MoeB/ThiF family protein compare
ABI39_RS12945 -1.4 -3.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS06060 -1.3 -3.7 S9 family peptidase compare
ABI39_RS15360 -1.3 -2.8 Na+/H+ antiporter NhaC family protein compare
ABI39_RS01325 -1.3 -8.0 phosphoenolpyruvate synthase compare
ABI39_RS17795 -1.3 -5.3 thiamine phosphate synthase compare
ABI39_RS11260 -1.3 -1.7 DUF4348 domain-containing protein compare
ABI39_RS13150 -1.2 -6.7 S41 family peptidase compare
ABI39_RS15760 -1.2 -1.5 hypothetical protein compare
ABI39_RS12980 -1.2 -2.7 HAD family hydrolase compare
ABI39_RS11650 -1.2 -6.4 galactokinase compare
ABI39_RS15430 -1.2 -1.3 hypothetical protein compare
ABI39_RS14465 -1.2 -4.9 hypothetical protein compare
ABI39_RS10650 -1.2 -7.9 AraC family transcriptional regulator compare
ABI39_RS06585 -1.2 -9.4 response regulator compare
ABI39_RS06925 -1.1 -7.9 glycosyltransferase compare
ABI39_RS17765 -1.1 -2.7 hypothetical protein compare
ABI39_RS02140 -1.1 -1.5 TetR/AcrR family transcriptional regulator compare
ABI39_RS11735 -1.1 -3.7 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS15265 -1.1 -2.0 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS06920 -1.1 -4.8 glycosyltransferase compare
ABI39_RS06235 -1.1 -3.4 UDP-galactopyranose mutase compare
ABI39_RS17760 -1.1 -5.7 phosphomethylpyrimidine synthase ThiC compare
ABI39_RS06570 -1.1 -7.9 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS15855 -1.1 -1.7 helix-turn-helix transcriptional regulator compare
ABI39_RS17315 -1.1 -6.7 alpha amylase C-terminal domain-containing protein compare
ABI39_RS20405 -1.0 -2.7 GDP-L-fucose synthase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Red Arabinan from sugar-beet across organisms