Experiment set1S403 for Phocaeicola dorei CL03T12C01

Compare to:

Red Arabinan from sugar-beet carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21065 -6.9 -8.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS04695 -6.9 -7.5 shikimate kinase compare
ABI39_RS02980 -6.4 -8.9 N-acetyltransferase compare
ABI39_RS04245 -6.3 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS07790 -6.2 -10.1 M20 family metallo-hydrolase compare
ABI39_RS12675 -6.1 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS07005 -6.1 -4.0 type II 3-dehydroquinate dehydratase compare
ABI39_RS10195 -6.0 -11.1 2-isopropylmalate synthase compare
ABI39_RS06055 -6.0 -9.7 phosphoribosylamine--glycine ligase compare
ABI39_RS11840 -6.0 -7.1 histidinol-phosphate transaminase compare
ABI39_RS19985 -6.0 -4.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10430 -5.7 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02970 -5.7 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10210 -5.6 -12.9 2-isopropylmalate synthase compare
ABI39_RS00475 -5.6 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS11845 -5.5 -9.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02875 -5.5 -9.6 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10500 -5.5 -7.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS11835 -5.5 -8.1 histidinol dehydrogenase compare
ABI39_RS21060 -5.4 -7.9 anthranilate phosphoribosyltransferase compare
ABI39_RS10205 -5.3 -9.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS04685 -5.3 -10.0 acetylglutamate kinase compare
ABI39_RS07095 -5.3 -19.2 argininosuccinate lyase compare
ABI39_RS02960 -5.3 -14.1 pyrroline-5-carboxylate reductase compare
ABI39_RS11830 -5.3 -6.9 ATP phosphoribosyltransferase compare
ABI39_RS10495 -5.2 -8.1 prephenate dehydrogenase compare
ABI39_RS21075 -5.2 -5.0 tryptophan synthase subunit alpha compare
ABI39_RS10200 -5.2 -15.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02975 -5.2 -11.2 argininosuccinate synthase compare
ABI39_RS12720 -5.2 -15.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS05660 -5.2 -10.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS02315 -5.1 -12.0 IMP dehydrogenase compare
ABI39_RS10640 -5.1 -13.4 serine dehydratase subunit alpha family protein compare
ABI39_RS19935 -5.1 -10.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10510 -5.1 -9.8 prephenate dehydratase compare
ABI39_RS02880 -5.0 -10.7 glutamate 5-kinase compare
ABI39_RS10260 -5.0 -9.8 adenylosuccinate synthase compare
ABI39_RS10435 -4.9 -11.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12715 -4.9 -13.2 dihydroxy-acid dehydratase compare
ABI39_RS16905 -4.9 -12.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10215 -4.9 -10.8 3-isopropylmalate dehydrogenase compare
ABI39_RS01360 -4.8 -9.2 hypothetical protein compare
ABI39_RS16910 -4.7 -8.8 3-phosphoglycerate dehydrogenase compare
ABI39_RS08195 -4.7 -6.7 hypothetical protein compare
ABI39_RS10440 -4.7 -9.0 threonine synthase compare
ABI39_RS10505 -4.7 -12.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS19925 -4.6 -10.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02870 -4.6 -9.8 acetylornithine carbamoyltransferase compare
ABI39_RS00405 -4.6 -15.1 phosphoribosylformylglycinamidine synthase compare
ABI39_RS21050 -4.5 -9.4 anthranilate synthase component I family protein compare
ABI39_RS12665 -4.5 -7.8 shikimate dehydrogenase compare
ABI39_RS19930 -4.5 -8.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS15380 -4.5 -4.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS10110 -4.5 -14.9 S9 family peptidase compare
ABI39_RS20070 -4.5 -8.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS12645 -4.5 -16.5 chorismate synthase compare
ABI39_RS12770 -4.5 -3.1 hypothetical protein compare
ABI39_RS03005 -4.5 -9.6 rhamnulose-1-phosphate aldolase compare
ABI39_RS08035 -4.4 -3.0 adenylosuccinate lyase compare
ABI39_RS14560 -4.4 -5.2 aspartate 1-decarboxylase compare
ABI39_RS09575 -4.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS02755 -4.3 -3.0 glycosyltransferase compare
ABI39_RS11405 -4.3 -11.4 hypothetical protein compare
ABI39_RS19920 -4.3 -10.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS21045 -4.3 -8.1 tryptophan synthase subunit beta compare
ABI39_RS04795 -4.3 -3.0 M28 family peptidase compare
ABI39_RS00770 -4.3 -13.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12725 -4.3 -4.8 acetolactate synthase small subunit compare
ABI39_RS17950 -4.2 -2.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS17170 -4.2 -2.9 protein BatD compare
ABI39_RS01300 -4.1 -12.3 NADP-specific glutamate dehydrogenase compare
ABI39_RS12735 -4.1 -8.0 ketol-acid reductoisomerase compare
ABI39_RS00205 -4.1 -4.8 phosphoglucosamine mutase compare
ABI39_RS18745 -4.1 -7.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS17420 -4.0 -7.8 serine hydroxymethyltransferase compare
ABI39_RS10870 -4.0 -16.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS04505 -4.0 -6.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS11630 -4.0 -6.9 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS06670 -4.0 -15.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS19950 -3.9 -3.8 diaminopimelate decarboxylase compare
ABI39_RS19945 -3.8 -11.0 aspartate kinase compare
ABI39_RS06675 -3.8 -12.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS09685 -3.6 -3.5 hypothetical protein compare
ABI39_RS04230 -3.6 -7.2 RNA polymerase factor sigma-54 compare
ABI39_RS05175 -3.6 -8.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS12415 -3.6 -7.2 biotin/lipoyl-binding protein compare
ABI39_RS18330 -3.5 -10.8 PD40 domain-containing protein compare
ABI39_RS06250 -3.5 -13.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17140 -3.5 -4.1 AAA family ATPase compare
ABI39_RS01415 -3.5 -3.4 branched-chain amino acid aminotransferase compare
ABI39_RS06995 -3.5 -9.8 tetratricopeptide repeat protein compare
ABI39_RS02965 -3.5 -17.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04885 -3.4 -5.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS06010 -3.4 -11.0 polysaccharide deacetylase family protein compare
ABI39_RS11620 -3.4 -13.9 FGGY-family carbohydrate kinase compare
ABI39_RS02500 -3.3 -9.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS12420 -3.3 -9.2 OadG family protein compare
ABI39_RS12755 -3.3 -3.2 SurA N-terminal domain-containing protein compare
ABI39_RS09845 -3.2 -2.2 (d)CMP kinase compare
ABI39_RS11625 -3.2 -15.1 L-arabinose isomerase compare
ABI39_RS11645 -3.1 -10.7 galactose mutarotase compare
ABI39_RS15375 -3.1 -14.1 sugar kinase compare
ABI39_RS08305 -3.1 -7.2 DUF4831 family protein compare
ABI39_RS17175 -3.1 -6.3 tetratricopeptide repeat protein compare
ABI39_RS17160 -3.0 -3.5 VWA domain-containing protein compare
ABI39_RS11640 -2.9 -13.8 sodium:solute symporter compare
ABI39_RS04690 -2.9 -8.2 biosynthetic arginine decarboxylase compare
ABI39_RS12955 -2.9 -5.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS15410 -2.8 -5.7 DUF4296 domain-containing protein compare
ABI39_RS12425 -2.8 -12.4 acyl-CoA carboxylase subunit beta compare
ABI39_RS09855 -2.8 -5.6 polyprenyl synthetase family protein compare
ABI39_RS16870 -2.8 -4.6 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS17945 -2.7 -12.9 glutamine synthetase III compare
ABI39_RS04700 -2.7 -3.7 type I DNA topoisomerase compare
ABI39_RS15415 -2.7 -6.4 hypothetical protein compare
ABI39_RS07090 -2.7 -2.1 hypothetical protein compare
ABI39_RS13000 -2.6 -6.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS13180 -2.5 -6.3 FAD:protein FMN transferase compare
ABI39_RS17150 -2.4 -4.1 hypothetical protein compare
ABI39_RS09670 -2.4 -2.3 cardiolipin synthase compare
ABI39_RS20615 -2.3 -10.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS00515 -2.2 -4.2 hypothetical protein compare
ABI39_RS09515 -2.2 -5.0 nucleoside deaminase compare
ABI39_RS21350 -2.2 -2.1 aspartate--ammonia ligase compare
ABI39_RS04930 -2.2 -3.5 helix-turn-helix transcriptional regulator compare
ABI39_RS14030 -2.1 -3.7 MFS transporter compare
ABI39_RS18910 -2.1 -1.8 preprotein translocase subunit YajC compare
ABI39_RS21055 -2.1 -6.1 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS04145 -2.1 -2.9 transcription elongation factor GreA compare
ABI39_RS09850 -2.0 -5.3 energy transducer TonB compare
ABI39_RS00410 -2.0 -3.6 response regulator compare
ABI39_RS11670 -2.0 -3.0 molecular chaperone DnaJ compare
ABI39_RS02290 -2.0 -4.3 hypothetical protein compare
ABI39_RS17195 -1.9 -8.8 hypothetical protein compare
ABI39_RS14225 -1.9 -8.6 glycosyltransferase compare
ABI39_RS13185 -1.9 -2.5 manganese efflux pump compare
ABI39_RS04860 -1.9 -2.0 HigA family addiction module antidote protein compare
ABI39_RS12565 -1.9 -6.9 hypothetical protein compare
ABI39_RS14230 -1.9 -12.0 alpha-amylase compare
ABI39_RS17640 -1.8 -4.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17755 -1.8 -2.9 thiazole synthase compare
ABI39_RS01650 -1.8 -8.7 methylmalonyl-CoA mutase small subunit compare
ABI39_RS16880 -1.8 -3.8 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS16875 -1.8 -3.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS12560 -1.8 -8.9 GGGtGRT protein compare
ABI39_RS00520 -1.8 -8.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS05450 -1.8 -3.1 redox-regulated ATPase YchF compare
ABI39_RS17775 -1.7 -9.9 2-iminoacetate synthase ThiH compare
ABI39_RS17795 -1.7 -8.2 thiamine phosphate synthase compare
ABI39_RS17780 -1.7 -8.3 HesA/MoeB/ThiF family protein compare
ABI39_RS17745 -1.7 -2.7 sulfur carrier protein ThiS compare
ABI39_RS15320 -1.7 -10.0 PorT family protein compare
ABI39_RS02985 -1.6 -4.6 arginine repressor compare
ABI39_RS06380 -1.6 -4.6 GH3 auxin-responsive promoter family protein compare
ABI39_RS17750 -1.6 -2.6 thiamine phosphate synthase compare
ABI39_RS17770 -1.6 -4.9 flavodoxin family protein compare
ABI39_RS11635 -1.6 -2.2 NUDIX hydrolase compare
ABI39_RS11545 -1.6 -7.3 hypothetical protein compare
ABI39_RS09195 -1.6 -2.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS18740 -1.5 -5.6 ATP-binding protein compare
ABI39_RS07010 -1.5 -2.6 pyruvate kinase compare
ABI39_RS20175 -1.5 -3.0 translation elongation factor 4 compare
ABI39_RS12945 -1.5 -2.9 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS01655 -1.5 -6.6 methylmalonyl-CoA mutase compare
ABI39_RS16895 -1.4 -3.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS14465 -1.4 -6.3 hypothetical protein compare
ABI39_RS11940 -1.4 -9.3 saccharopine dehydrogenase family protein compare
ABI39_RS01325 -1.4 -8.9 phosphoenolpyruvate synthase compare
ABI39_RS06060 -1.4 -4.1 S9 family peptidase compare
ABI39_RS18300 -1.4 -3.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS06920 -1.3 -6.1 glycosyltransferase compare
ABI39_RS06585 -1.3 -10.0 response regulator compare
ABI39_RS17465 -1.3 -7.0 DUF3078 domain-containing protein compare
ABI39_RS06235 -1.3 -4.2 UDP-galactopyranose mutase compare
ABI39_RS15855 -1.2 -2.6 helix-turn-helix transcriptional regulator compare
ABI39_RS08850 -1.2 -3.7 toprim domain-containing protein compare
ABI39_RS20355 -1.2 -8.6 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS06575 -1.2 -9.4 TonB-dependent receptor compare
ABI39_RS06925 -1.2 -8.1 glycosyltransferase compare
ABI39_RS06115 -1.2 -7.2 phosphatase PAP2 family protein compare
ABI39_RS15765 -1.2 -1.4 hypothetical protein compare
ABI39_RS10650 -1.2 -8.1 AraC family transcriptional regulator compare
ABI39_RS04280 -1.2 -4.8 DUF4292 domain-containing protein compare
ABI39_RS17315 -1.2 -8.0 alpha amylase C-terminal domain-containing protein compare
ABI39_RS11655 -1.2 -2.6 MFS transporter compare
ABI39_RS04285 -1.1 -6.2 tetratricopeptide repeat protein compare
ABI39_RS18170 -1.1 -0.6 hypothetical protein compare
ABI39_RS17760 -1.1 -6.2 phosphomethylpyrimidine synthase ThiC compare
ABI39_RS14235 -1.1 -3.2 hypothetical protein compare
ABI39_RS14240 -1.1 -4.8 biotin synthase BioB compare
ABI39_RS13150 -1.1 -6.8 S41 family peptidase compare
ABI39_RS11650 -1.1 -6.1 galactokinase compare
ABI39_RS00745 -1.1 -1.8 tRNA-Met compare
ABI39_RS19845 -1.1 -2.0 hypothetical protein compare
ABI39_RS14250 -1.1 -4.8 8-amino-7-oxononanoate synthase compare
ABI39_RS17765 -1.1 -1.3 hypothetical protein compare
ABI39_RS19385 -1.0 -2.3 hypothetical protein compare
ABI39_RS08135 -1.0 -2.1 YicC family protein compare
ABI39_RS11735 -1.0 -3.5 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS16385 -1.0 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Red Arabinan from sugar-beet across organisms