Experiment set1S401 for Phocaeicola dorei CL03T12C01

Compare to:

B-glucan from yeast carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04460 -9.0 -15.0 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS04455 -8.2 -20.7 TonB-dependent receptor compare
ABI39_RS04425 -7.8 -15.9 hypothetical protein compare
ABI39_RS11840 -7.3 -5.1 histidinol-phosphate transaminase compare
ABI39_RS06010 -7.1 -8.7 polysaccharide deacetylase family protein compare
ABI39_RS11835 -6.9 -6.7 histidinol dehydrogenase compare
ABI39_RS10640 -6.8 -12.6 serine dehydratase subunit alpha family protein compare
ABI39_RS04695 -6.8 -6.6 shikimate kinase compare
ABI39_RS10440 -6.8 -7.1 threonine synthase compare
ABI39_RS16910 -6.7 -10.0 3-phosphoglycerate dehydrogenase compare
ABI39_RS04685 -6.7 -6.4 acetylglutamate kinase compare
ABI39_RS02975 -6.7 -9.3 argininosuccinate synthase compare
ABI39_RS12425 -6.3 -11.4 acyl-CoA carboxylase subunit beta compare
ABI39_RS01650 -6.3 -9.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS07790 -6.1 -8.6 M20 family metallo-hydrolase compare
ABI39_RS10430 -6.1 -13.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS01655 -5.9 -11.9 methylmalonyl-CoA mutase compare
ABI39_RS05660 -5.8 -10.8 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS12665 -5.8 -8.9 shikimate dehydrogenase compare
ABI39_RS19930 -5.7 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS09515 -5.7 -4.9 nucleoside deaminase compare
ABI39_RS02980 -5.6 -7.5 N-acetyltransferase compare
ABI39_RS11845 -5.6 -10.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04795 -5.6 -2.5 M28 family peptidase compare
ABI39_RS00240 -5.6 -4.3 NigD-like N-terminal domain-containing protein compare
ABI39_RS21075 -5.6 -6.5 tryptophan synthase subunit alpha compare
ABI39_RS12645 -5.6 -13.3 chorismate synthase compare
ABI39_RS19935 -5.6 -7.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS07095 -5.6 -18.9 argininosuccinate lyase compare
ABI39_RS16905 -5.5 -14.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12415 -5.5 -4.5 biotin/lipoyl-binding protein compare
ABI39_RS07005 -5.4 -5.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS08195 -5.4 -7.4 hypothetical protein compare
ABI39_RS04465 -5.3 -9.8 SusF/SusE family outer membrane protein compare
ABI39_RS21060 -5.2 -7.9 anthranilate phosphoribosyltransferase compare
ABI39_RS21050 -5.2 -6.9 anthranilate synthase component I family protein compare
ABI39_RS12430 -5.2 -1.3 methylmalonyl-CoA epimerase compare
ABI39_RS01360 -5.1 -8.9 hypothetical protein compare
ABI39_RS02875 -5.1 -8.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10500 -5.1 -6.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS08305 -5.1 -6.4 DUF4831 family protein compare
ABI39_RS10505 -5.0 -15.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS00770 -4.9 -11.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS19385 -4.9 -3.6 hypothetical protein compare
ABI39_RS09685 -4.8 -2.4 hypothetical protein compare
ABI39_RS18330 -4.8 -12.6 PD40 domain-containing protein compare
ABI39_RS10205 -4.8 -5.3 3-isopropylmalate dehydratase small subunit compare
ABI39_RS19925 -4.8 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS11545 -4.8 -8.6 hypothetical protein compare
ABI39_RS10435 -4.7 -10.9 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10510 -4.7 -10.6 prephenate dehydratase compare
ABI39_RS11830 -4.7 -5.7 ATP phosphoribosyltransferase compare
ABI39_RS12420 -4.7 -6.7 OadG family protein compare
ABI39_RS21065 -4.7 -5.3 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS18745 -4.6 -6.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS02960 -4.6 -12.6 pyrroline-5-carboxylate reductase compare
ABI39_RS00205 -4.6 -3.1 phosphoglucosamine mutase compare
ABI39_RS02870 -4.4 -7.5 acetylornithine carbamoyltransferase compare
ABI39_RS12770 -4.4 -3.0 hypothetical protein compare
ABI39_RS10495 -4.4 -6.5 prephenate dehydrogenase compare
ABI39_RS02880 -4.3 -8.6 glutamate 5-kinase compare
ABI39_RS02970 -4.3 -9.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10200 -4.3 -13.7 3-isopropylmalate dehydratase large subunit compare
ABI39_RS06380 -4.3 -7.7 GH3 auxin-responsive promoter family protein compare
ABI39_RS17950 -4.2 -2.6 Crp/Fnr family transcriptional regulator compare
ABI39_RS02755 -4.2 -2.9 glycosyltransferase compare
ABI39_RS12720 -4.2 -12.8 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS02290 -4.1 -3.0 hypothetical protein compare
ABI39_RS04230 -4.1 -6.2 RNA polymerase factor sigma-54 compare
ABI39_RS01415 -4.1 -2.8 branched-chain amino acid aminotransferase compare
ABI39_RS17140 -4.0 -3.4 AAA family ATPase compare
ABI39_RS15410 -4.0 -5.0 DUF4296 domain-containing protein compare
ABI39_RS17640 -4.0 -4.8 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17175 -4.0 -6.7 tetratricopeptide repeat protein compare
ABI39_RS10110 -4.0 -13.4 S9 family peptidase compare
ABI39_RS06675 -4.0 -10.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS12735 -4.0 -6.7 ketol-acid reductoisomerase compare
ABI39_RS17160 -3.9 -2.7 VWA domain-containing protein compare
ABI39_RS04475 -3.9 -13.1 alpha-amylase compare
ABI39_RS11405 -3.9 -11.7 hypothetical protein compare
ABI39_RS08035 -3.8 -3.7 adenylosuccinate lyase compare
ABI39_RS10215 -3.8 -10.8 3-isopropylmalate dehydrogenase compare
ABI39_RS12715 -3.8 -11.1 dihydroxy-acid dehydratase compare
ABI39_RS02470 -3.7 -6.3 ATP-dependent DNA helicase RecG compare
ABI39_RS10260 -3.7 -9.3 adenylosuccinate synthase compare
ABI39_RS21045 -3.7 -6.1 tryptophan synthase subunit beta compare
ABI39_RS06670 -3.7 -14.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS06995 -3.7 -7.3 tetratricopeptide repeat protein compare
ABI39_RS17150 -3.7 -5.0 hypothetical protein compare
ABI39_RS10195 -3.6 -8.5 2-isopropylmalate synthase compare
ABI39_RS20355 -3.5 -12.9 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS12755 -3.4 -2.4 SurA N-terminal domain-containing protein compare
ABI39_RS05450 -3.4 -3.4 redox-regulated ATPase YchF compare
ABI39_RS17170 -3.4 -3.7 protein BatD compare
ABI39_RS09575 -3.4 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS17195 -3.3 -10.2 hypothetical protein compare
ABI39_RS10210 -3.3 -10.8 2-isopropylmalate synthase compare
ABI39_RS19950 -3.2 -4.3 diaminopimelate decarboxylase compare
ABI39_RS20930 -3.2 -10.7 tetratricopeptide repeat protein compare
ABI39_RS04700 -3.2 -3.1 type I DNA topoisomerase compare
ABI39_RS00410 -3.1 -2.1 response regulator compare
ABI39_RS09845 -3.1 -2.1 (d)CMP kinase compare
ABI39_RS03320 -3.0 -7.6 FecR domain-containing protein compare
ABI39_RS07090 -3.0 -1.9 hypothetical protein compare
ABI39_RS01300 -3.0 -9.8 NADP-specific glutamate dehydrogenase compare
ABI39_RS09245 -2.9 -9.6 cardiolipin synthase compare
ABI39_RS17850 -2.9 -7.0 alpha-glucan family phosphorylase compare
ABI39_RS15855 -2.9 -3.5 helix-turn-helix transcriptional regulator compare
ABI39_RS00095 -2.8 -11.5 elongation factor G compare
ABI39_RS04860 -2.8 -3.1 HigA family addiction module antidote protein compare
ABI39_RS17420 -2.8 -6.8 serine hydroxymethyltransferase compare
ABI39_RS10650 -2.8 -15.5 AraC family transcriptional regulator compare
ABI39_RS12725 -2.7 -3.7 acetolactate synthase small subunit compare
ABI39_RS04690 -2.7 -6.9 biosynthetic arginine decarboxylase compare
ABI39_RS16700 -2.7 -6.2 agmatine deiminase family protein compare
ABI39_RS21350 -2.6 -1.8 aspartate--ammonia ligase compare
ABI39_RS14560 -2.6 -3.0 aspartate 1-decarboxylase compare
ABI39_RS02355 -2.5 -8.5 ABC transporter ATP-binding protein compare
ABI39_RS18300 -2.5 -5.0 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS04470 -2.5 -8.1 DUF5115 domain-containing protein compare
ABI39_RS05175 -2.5 -7.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS02350 -2.5 -6.2 ABC transporter permease compare
ABI39_RS00405 -2.5 -14.1 phosphoribosylformylglycinamidine synthase compare
ABI39_RS09850 -2.4 -3.7 energy transducer TonB compare
ABI39_RS11655 -2.4 -4.3 MFS transporter compare
ABI39_RS20010 -2.4 -8.9 AMP-binding protein compare
ABI39_RS06050 -2.4 -3.8 hypothetical protein compare
ABI39_RS04930 -2.3 -4.0 helix-turn-helix transcriptional regulator compare
ABI39_RS07010 -2.3 -2.6 pyruvate kinase compare
ABI39_RS13835 -2.3 -2.7 DUF3037 domain-containing protein compare
ABI39_RS00515 -2.3 -2.8 hypothetical protein compare
ABI39_RS20965 -2.3 -1.8 SPOR domain-containing protein compare
ABI39_RS02500 -2.3 -8.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS15320 -2.3 -12.3 PorT family protein compare
ABI39_RS06250 -2.3 -11.0 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS20095 -2.2 -12.2 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12675 -2.2 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS00475 -2.2 -4.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS22955 -2.2 -2.4 hypothetical protein compare
ABI39_RS19920 -2.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS08850 -2.2 -3.7 toprim domain-containing protein compare
ABI39_RS11735 -2.1 -4.3 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS04280 -2.1 -4.4 DUF4292 domain-containing protein compare
ABI39_RS11670 -2.1 -2.4 molecular chaperone DnaJ compare
ABI39_RS06235 -2.1 -5.3 UDP-galactopyranose mutase compare
ABI39_RS15265 -2.1 -2.8 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS02845 -2.1 -6.2 RluA family pseudouridine synthase compare
ABI39_RS17745 -2.1 -1.7 sulfur carrier protein ThiS compare
ABI39_RS20080 -2.0 -6.0 electron transport complex subunit RsxA compare
ABI39_RS17180 -2.0 -5.4 phosphatase PAP2 family protein compare
ABI39_RS02965 -2.0 -10.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS20175 -2.0 -2.5 translation elongation factor 4 compare
ABI39_RS05280 -2.0 -8.9 S41 family peptidase compare
ABI39_RS13180 -2.0 -4.1 FAD:protein FMN transferase compare
ABI39_RS04430 -2.0 -3.4 glycoside hydrolase family 13 protein compare
ABI39_RS15400 -2.0 -7.8 TraR/DksA C4-type zinc finger protein compare
ABI39_RS06055 -2.0 -8.1 phosphoribosylamine--glycine ligase compare
ABI39_RS02315 -2.0 -7.9 IMP dehydrogenase compare
ABI39_RS00090 -2.0 -4.6 HAMP domain-containing histidine kinase compare
ABI39_RS04420 -1.9 -2.5 hypothetical protein compare
ABI39_RS20100 -1.9 -6.5 electron transport complex subunit RsxC compare
ABI39_RS15010 -1.9 -2.1 F0F1 ATP synthase subunit gamma compare
ABI39_RS03170 -1.9 -1.4 plasmid mobilization relaxosome protein MobC compare
ABI39_RS00210 -1.9 -2.5 DUF4827 domain-containing protein compare
ABI39_RS13000 -1.9 -3.7 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS04145 -1.9 -1.7 transcription elongation factor GreA compare
ABI39_RS16320 -1.8 -1.3 DUF3989 domain-containing protein compare
ABI39_RS10085 -1.8 -3.7 enoyl-ACP reductase compare
ABI39_RS14030 -1.8 -3.3 MFS transporter compare
ABI39_RS14235 -1.8 -2.6 hypothetical protein compare
ABI39_RS04730 -1.8 -1.7 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS14250 -1.8 -5.8 8-amino-7-oxononanoate synthase compare
ABI39_RS11875 -1.8 -4.8 OmpH family outer membrane protein compare
ABI39_RS20085 -1.8 -6.6 electron transport complex subunit E compare
ABI39_RS06220 -1.7 -9.6 glycosyltransferase family 2 protein compare
ABI39_RS09830 -1.7 -4.4 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS20090 -1.7 -7.2 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS17205 -1.7 -3.0 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS04970 -1.7 -4.2 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS13170 -1.7 -9.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS12955 -1.7 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS09915 -1.7 -2.8 DUF5056 domain-containing protein compare
ABI39_RS12300 -1.7 -3.7 endonuclease MutS2 compare
ABI39_RS13855 -1.7 -2.9 response regulator transcription factor compare
ABI39_RS17130 -1.7 -1.0 HU family DNA-binding protein compare
ABI39_RS23150 -1.7 -1.1 S26 family signal peptidase compare
ABI39_RS06620 -1.7 -2.5 HU family DNA-binding protein compare
ABI39_RS14245 -1.7 -7.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS19540 -1.7 -3.0 hypothetical protein compare
ABI39_RS14085 -1.6 -1.1 hypothetical protein compare
ABI39_RS05980 -1.6 -2.5 gluconate 5-dehydrogenase compare
ABI39_RS17310 -1.6 -7.4 hypothetical protein compare
ABI39_RS21185 -1.6 -7.0 ROK family transcriptional regulator compare
ABI39_RS00520 -1.6 -5.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS11550 -1.5 -6.3 hypothetical protein compare
ABI39_RS14465 -1.5 -8.3 hypothetical protein compare
ABI39_RS16705 -1.5 -9.9 translocation/assembly module TamB compare
ABI39_RS19945 -1.5 -5.2 aspartate kinase compare
ABI39_RS07815 -1.5 -2.0 RNA polymerase sigma factor compare
ABI39_RS08555 -1.5 -4.3 Trk system potassium transporter TrkA compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source B-glucan from yeast in Phocaeicola dorei CL03T12C01

For carbon source B-glucan from yeast across organisms