Experiment set1S40 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -2.9 -16.4 Pca regulon regulatory protein compare
MPMX19_00475 -2.5 -3.3 hypothetical protein compare
MPMX19_05044 -2.3 -3.1 hypothetical protein compare
MPMX19_00304 -2.1 -3.1 Phosphatidylcholine synthase compare
MPMX19_00694 -2.0 -2.9 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_00530 -1.9 -4.0 Orotate phosphoribosyltransferase compare
MPMX19_04171 -1.9 -3.0 16S ribosomal RNA compare
MPMX19_01053 -1.8 -3.8 Dihydroorotase compare
MPMX19_01597 -1.8 -2.9 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_01703 -1.8 -2.7 hypothetical protein compare
MPMX19_00128 -1.8 -11.0 hypothetical protein compare
MPMX19_00186 -1.7 -2.8 hypothetical protein compare
MPMX19_02267 -1.7 -1.6 hypothetical protein compare
MPMX19_02618 -1.7 -2.7 Transcriptional regulatory protein BaeR compare
MPMX19_02657 -1.7 -13.4 Glutamate synthase [NADPH] large chain compare
MPMX19_00680 -1.6 -2.8 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_00839 -1.6 -1.8 hypothetical protein compare
MPMX19_03870 -1.6 -2.8 L-aspartate dehydrogenase compare
MPMX19_00838 -1.6 -2.9 GTP pyrophosphokinase rsh compare
MPMX19_00714 -1.6 -5.8 Ferrous-iron efflux pump FieF compare
MPMX19_01630 -1.5 -4.2 Phosphoribosylamine--glycine ligase compare
MPMX19_02658 -1.5 -10.0 Glutamate synthase [NADPH] small chain compare
MPMX19_01054 -1.5 -5.1 Aspartate carbamoyltransferase compare
MPMX19_01822 -1.5 -5.7 2-isopropylmalate synthase compare
MPMX19_05271 -1.5 -2.7 hypothetical protein compare
MPMX19_05023 -1.4 -1.9 hypothetical protein compare
MPMX19_06123 -1.4 -2.4 hypothetical protein compare
MPMX19_02303 -1.4 -2.7 hypothetical protein compare
MPMX19_02543 -1.4 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00126 -1.4 -3.0 hypothetical protein compare
MPMX19_04958 -1.3 -2.2 Methyl-accepting chemotaxis protein compare
MPMX19_06437 -1.3 -2.9 DNA-invertase hin compare
MPMX19_06954 -1.3 -2.6 hypothetical protein compare
MPMX19_03734 -1.3 -2.1 RutC family protein YjgH compare
MPMX19_05387 -1.3 -2.0 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_05065 -1.3 -2.4 Farnesyl diphosphate synthase compare
MPMX19_04535 -1.3 -2.0 Maleate isomerase compare
MPMX19_02981 -1.3 -4.6 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01912 -1.3 -3.4 Acetyl-CoA acetyltransferase compare
MPMX19_01342 -1.2 -2.8 hypothetical protein compare
MPMX19_00705 -1.2 -2.8 Cell division coordinator CpoB compare
MPMX19_01610 -1.2 -2.4 ATP-dependent DNA helicase PcrA compare
MPMX19_01714 -1.2 -1.8 tRNA-modifying protein YgfZ compare
MPMX19_01076 -1.2 -2.1 Molybdopterin synthase catalytic subunit compare
MPMX19_00846 -1.2 -1.6 hypothetical protein compare
MPMX19_01304 -1.2 -7.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_02664 -1.2 -1.5 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_00061 -1.2 -2.8 L-lysine 2,3-aminomutase compare
MPMX19_00696 -1.1 -4.7 Crossover junction endodeoxyribonuclease RuvC compare
MPMX19_00142 -1.1 -1.6 hypothetical protein compare
MPMX19_01796 -1.1 -1.6 hypothetical protein compare
MPMX19_01084 -1.1 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_01297 -1.1 -1.8 hypothetical protein compare
MPMX19_05930 -1.1 -2.4 Dipeptidyl-peptidase 6 compare
MPMX19_02779 -1.1 -2.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06179 -1.1 -1.3 putative SURF1-like protein compare
MPMX19_00208 -1.1 -1.9 hypothetical protein compare
MPMX19_03420 -1.0 -1.5 hypothetical protein compare
MPMX19_05915 -1.0 -2.4 Flagellar M-ring protein compare
MPMX19_01616 -1.0 -1.8 hypothetical protein compare
MPMX19_06351 -1.0 -2.2 Arsenate reductase compare
MPMX19_00606 -1.0 -4.5 3-isopropylmalate dehydratase small subunit 1 compare
MPMX19_02268 -1.0 -2.7 hypothetical protein compare
MPMX19_00923 -1.0 -2.4 hypothetical protein compare
MPMX19_03788 -1.0 -3.3 hypothetical protein compare
MPMX19_00906 -1.0 -7.2 Amidophosphoribosyltransferase compare
MPMX19_04392 -1.0 -2.1 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_00574 -1.0 -3.2 hypothetical protein compare
MPMX19_05449 -1.0 -2.4 hypothetical protein compare
MPMX19_00167 -1.0 -1.5 hypothetical protein compare
MPMX19_05680 -1.0 -2.8 Cell cycle response regulator CtrA compare
MPMX19_01883 -1.0 -4.6 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_03694 -1.0 -1.6 hypothetical protein compare
MPMX19_03859 -1.0 -2.2 hypothetical protein compare
MPMX19_05997 -1.0 -2.2 hypothetical protein compare
MPMX19_04362 -0.9 -1.4 Cytidine deaminase compare
MPMX19_03252 -0.9 -2.9 hypothetical protein compare
MPMX19_04610 -0.9 -2.4 putative enoyl-CoA hydratase 1 compare
MPMX19_04954 -0.9 -2.6 Putative hydro-lyase compare
MPMX19_05727 -0.9 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_02860 -0.9 -2.6 hypothetical protein compare
MPMX19_00503 -0.9 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_05442 -0.9 -1.9 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_01014 -0.9 -3.2 Indole-3-glycerol phosphate synthase compare
MPMX19_06414 -0.9 -2.9 hypothetical protein compare
MPMX19_06546 -0.9 -1.9 hypothetical protein compare
MPMX19_05358 -0.9 -1.6 hypothetical protein compare
MPMX19_05254 -0.9 -1.5 Carbon monoxide dehydrogenase small chain compare
MPMX19_03634 -0.9 -2.2 Arginase compare
MPMX19_04941 -0.8 -4.9 hypothetical protein compare
MPMX19_03787 -0.8 -1.3 hypothetical protein compare
MPMX19_01545 -0.8 -1.1 Lon protease compare
MPMX19_03276 -0.8 -2.4 hypothetical protein compare
MPMX19_04359 -0.8 -2.4 Ferredoxin, 2Fe-2S compare
MPMX19_02987 -0.8 -1.5 hypothetical protein compare
MPMX19_01168 -0.8 -3.3 Protein-L-isoaspartate O-methyltransferase compare
MPMX19_05181 -0.8 -1.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02806 -0.8 -1.5 HTH-type transcriptional regulator DmlR compare
MPMX19_02702 -0.8 -2.4 hypothetical protein compare
MPMX19_06579 -0.8 -1.6 Carnitine monooxygenase oxygenase subunit compare
MPMX19_06985 -0.8 -1.6 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_03282 -0.8 -3.0 HTH-type transcriptional regulator McbR compare
MPMX19_02801 -0.8 -1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01277 -0.8 -3.6 hypothetical protein compare
MPMX19_04577 -0.8 -2.3 putative glycosyltransferase compare
MPMX19_06800 -0.8 -2.7 Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase compare
MPMX19_05252 -0.8 -2.4 Carbon monoxide dehydrogenase medium chain compare
MPMX19_01499 -0.8 -2.7 hypothetical protein compare
MPMX19_06337 -0.8 -2.1 Arsenic resistance transcriptional regulator ArsR1 compare
MPMX19_04950 -0.8 -3.7 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_06001 -0.8 -2.4 hypothetical protein compare
MPMX19_02553 -0.8 -3.3 Protein-export protein SecB compare
MPMX19_02011 -0.8 -1.9 RNA helicase CrhR compare
MPMX19_06916 -0.8 -1.7 Crotonyl-CoA hydratase compare
MPMX19_02275 -0.8 -1.8 hypothetical protein compare
MPMX19_00266 -0.8 -1.4 hypothetical protein compare
MPMX19_05144 -0.7 -0.8 hypothetical protein compare
MPMX19_02516 -0.7 -2.5 hypothetical protein compare
MPMX19_05733 -0.7 -1.5 Biopolymer transport protein ExbD compare
MPMX19_02675 -0.7 -5.8 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_01426 -0.7 -1.4 hypothetical protein compare
MPMX19_03771 -0.7 -2.4 hypothetical protein compare
MPMX19_06821 -0.7 -2.2 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_02573 -0.7 -1.4 Dihydrofolate reductase compare
MPMX19_05796 -0.7 -2.6 HTH-type transcriptional repressor BdcR compare
MPMX19_00821 -0.7 -2.0 Protein SlyX compare
MPMX19_03454 -0.7 -2.7 Nitrate import ATP-binding protein NrtC compare
MPMX19_02234 -0.7 -3.0 hypothetical protein compare
MPMX19_02207 -0.7 -1.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_00062 -0.7 -1.9 Glycerophosphodiester phosphodiesterase, cytoplasmic compare
MPMX19_02177 -0.7 -2.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_04903 -0.7 -2.2 hypothetical protein compare
MPMX19_01884 -0.7 -1.8 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_02544 -0.7 -2.2 hypothetical protein compare
MPMX19_04208 -0.7 -2.2 flagellum biosynthesis repressor protein FlbT compare
MPMX19_02202 -0.7 -1.5 hypothetical protein compare
MPMX19_04584 -0.7 -2.2 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03653 -0.7 -3.3 Mannitol 2-dehydrogenase compare
MPMX19_01777 -0.7 -1.8 2-aminoadipate transaminase compare
MPMX19_06271 -0.7 -4.4 hypothetical protein compare
MPMX19_00887 -0.7 -1.4 hypothetical protein compare
MPMX19_02266 -0.7 -2.6 hypothetical protein compare
MPMX19_03193 -0.7 -2.8 hypothetical protein compare
MPMX19_05831 -0.7 -1.9 Protein/nucleic acid deglycase 2 compare
MPMX19_02078 -0.7 -1.4 hypothetical protein compare
MPMX19_03798 -0.7 -1.4 hypothetical protein compare
MPMX19_02979 -0.7 -2.4 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_06785 -0.7 -1.4 L-idonate 5-dehydrogenase (NAD(P)(+)) compare
MPMX19_01314 -0.7 -2.7 hypothetical protein compare
MPMX19_04241 -0.7 -2.7 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01939 -0.7 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_02736 -0.6 -4.3 Tryptophan synthase beta chain compare
MPMX19_06417 -0.6 -2.7 Transcriptional regulatory protein OmpR compare
MPMX19_03871 -0.6 -1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02834 -0.6 -2.0 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_03217 -0.6 -2.3 2-haloacrylate reductase compare
MPMX19_05192 -0.6 -2.9 hypothetical protein compare
MPMX19_01075 -0.6 -1.3 Molybdopterin synthase sulfur carrier subunit compare
MPMX19_04429 -0.6 -2.4 N-acetylmuramoyl-L-alanine amidase AmiA compare
MPMX19_02136 -0.6 -0.9 Phage shock protein A compare
MPMX19_03915 -0.6 -1.8 hypothetical protein compare
MPMX19_01012 -0.6 -1.6 Cyclic pyranopterin monophosphate synthase compare
MPMX19_06952 -0.6 -1.8 Electron transfer flavoprotein subunit alpha compare
MPMX19_04079 -0.6 -0.8 hypothetical protein compare
MPMX19_02404 -0.6 -1.8 LexA repressor compare
MPMX19_05440 -0.6 -2.2 hypothetical protein compare
MPMX19_04869 -0.6 -2.4 DNA polymerase I compare
MPMX19_05420 -0.6 -2.9 Glycine cleavage system transcriptional activator compare
MPMX19_05070 -0.6 -2.9 hypothetical protein compare
MPMX19_00978 -0.6 -2.0 hypothetical protein compare
MPMX19_00112 -0.6 -1.5 Multidrug transporter EmrE compare
MPMX19_03724 -0.6 -0.8 hypothetical protein compare
MPMX19_05119 -0.6 -4.6 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_03795 -0.6 -2.7 hypothetical protein compare
MPMX19_00746 -0.6 -1.7 hypothetical protein compare
MPMX19_02181 -0.6 -1.6 hypothetical protein compare
MPMX19_02392 -0.6 -4.9 Aspartate/prephenate aminotransferase compare
MPMX19_01872 -0.6 -3.1 hypothetical protein compare
MPMX19_03612 -0.6 -2.3 hypothetical protein compare
MPMX19_00237 -0.6 -2.0 Cysteine synthase compare
MPMX19_02450 -0.6 -3.1 hypothetical protein compare
MPMX19_05445 -0.6 -1.8 tRNA-Glu compare
MPMX19_05874 -0.6 -1.8 2-keto-4-pentenoate hydratase compare
MPMX19_00141 -0.6 -1.7 hypothetical protein compare
MPMX19_00996 -0.6 -2.4 Metalloprotease MmpA compare
MPMX19_04430 -0.6 -1.9 hypothetical protein compare
MPMX19_06044 -0.6 -0.9 hypothetical protein compare
MPMX19_02031 -0.6 -1.3 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_05294 -0.6 -2.4 hypothetical protein compare
MPMX19_02466 -0.6 -1.0 Octopine permease ATP-binding protein P compare
MPMX19_00665 -0.6 -2.0 hypothetical protein compare
MPMX19_04664 -0.6 -1.8 hypothetical protein compare
MPMX19_01627 -0.6 -2.1 hypothetical protein compare
MPMX19_02927 -0.6 -1.6 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
MPMX19_02803 -0.6 -1.4 putative FAD-linked oxidoreductase compare
MPMX19_05352 -0.6 -1.1 putative cysteine-rich protein YhjQ compare
MPMX19_03182 -0.6 -2.0 hypothetical protein compare
MPMX19_06520 -0.6 -1.4 Nitrate import ATP-binding protein NrtC compare
MPMX19_05906 -0.6 -1.1 hypothetical protein compare
MPMX19_04095 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms