Experiment set1S40 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06297 +1.2 2.8 hypothetical protein compare
MPMX19_06808 +1.1 3.6 HTH-type transcriptional regulator DmlR compare
MPMX19_01645 +1.0 2.9 HTH-type transcriptional regulator GltC compare
MPMX19_03072 +1.0 2.3 hypothetical protein compare
MPMX19_06488 +0.9 2.2 Taurine-binding periplasmic protein compare
MPMX19_05203 +0.9 2.7 hypothetical protein compare
MPMX19_06272 +0.9 0.8 hypothetical protein compare
MPMX19_06510 +0.9 2.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05470 +0.8 3.5 hypothetical protein compare
MPMX19_00864 +0.8 2.8 Flagellar hook-basal body complex protein FliE compare
MPMX19_04449 +0.8 1.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_06509 +0.8 3.3 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06381 +0.8 1.3 putative manganese efflux pump MntP compare
MPMX19_05152 +0.8 2.8 Phosphonoacetaldehyde hydrolase compare
MPMX19_05586 +0.8 1.6 hypothetical protein compare
MPMX19_02251 +0.8 2.2 hypothetical protein compare
MPMX19_04551 +0.8 1.0 HTH-type transcriptional repressor RspR compare
MPMX19_01249 +0.8 1.7 Periplasmic serine endoprotease DegP compare
MPMX19_03425 +0.7 1.3 hypothetical protein compare
MPMX19_03157 +0.7 1.9 hypothetical protein compare
MPMX19_06569 +0.7 2.0 hypothetical protein compare
MPMX19_06880 +0.7 2.1 Validamycin A dioxygenase compare
MPMX19_06193 +0.7 1.8 Flagellar hook-basal body complex protein FliE compare
MPMX19_02320 +0.7 1.3 HTH-type transcriptional regulator GltR compare
MPMX19_03757 +0.7 2.5 D-ribose pyranase compare
MPMX19_03141 +0.7 1.7 hypothetical protein compare
MPMX19_01493 +0.7 1.7 Flagellar assembly protein FliX compare
MPMX19_05652 +0.7 2.2 hypothetical protein compare
MPMX19_05362 +0.7 1.9 hypothetical protein compare
MPMX19_06211 +0.7 2.0 tRNA-Ala compare
MPMX19_05068 +0.7 2.1 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_06526 +0.6 2.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01708 +0.6 2.3 hypothetical protein compare
MPMX19_04258 +0.6 2.3 hypothetical protein compare
MPMX19_05798 +0.6 1.8 HTH-type transcriptional repressor NanR compare
MPMX19_00212 +0.6 5.2 Nitrogen fixation regulation protein FixK compare
MPMX19_02514 +0.6 1.3 hypothetical protein compare
MPMX19_03198 +0.6 2.2 hypothetical protein compare
MPMX19_05178 +0.6 3.2 Alkanesulfonate monooxygenase compare
MPMX19_05448 +0.6 2.4 DNA-invertase hin compare
MPMX19_03816 +0.6 1.0 hypothetical protein compare
MPMX19_01479 +0.6 3.4 hypothetical protein compare
MPMX19_02804 +0.6 2.4 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_00423 +0.6 2.5 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_03939 +0.6 2.0 Enoyl-CoA-hydratase compare
MPMX19_04120 +0.6 2.1 hypothetical protein compare
MPMX19_05011 +0.6 2.4 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_05593 +0.6 2.7 Pyrrolidone-carboxylate peptidase compare
MPMX19_04856 +0.6 2.1 Phosphoglycolate phosphatase compare
MPMX19_02902 +0.6 2.0 hypothetical protein compare
MPMX19_04673 +0.6 2.2 Purine ribonucleoside efflux pump NepI compare
MPMX19_03752 +0.6 1.3 hypothetical protein compare
MPMX19_00094 +0.6 1.4 hypothetical protein compare
MPMX19_05104 +0.6 1.7 hypothetical protein compare
MPMX19_06888 +0.6 2.2 hypothetical protein compare
MPMX19_01565 +0.6 1.1 hypothetical protein compare
MPMX19_02348 +0.6 1.4 hypothetical protein compare
MPMX19_06192 +0.5 3.3 hypothetical protein compare
MPMX19_03756 +0.5 1.6 hypothetical protein compare
MPMX19_02778 +0.5 1.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06333 +0.5 2.5 Regulatory protein AtoC compare
MPMX19_06513 +0.5 2.9 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_06843 +0.5 2.3 hypothetical protein compare
MPMX19_04521 +0.5 2.1 Bifunctional protein PaaZ compare
MPMX19_03439 +0.5 1.1 hypothetical protein compare
MPMX19_03825 +0.5 1.4 IS5 family transposase IS4811 compare
MPMX19_05295 +0.5 1.5 hypothetical protein compare
MPMX19_06042 +0.5 3.1 hypothetical protein compare
MPMX19_00841 +0.5 0.8 Holo-[acyl-carrier-protein] synthase compare
MPMX19_03075 +0.5 2.8 hypothetical protein compare
MPMX19_02524 +0.5 4.0 tRNA pseudouridine synthase B compare
MPMX19_04700 +0.5 2.3 Adaptive-response sensory-kinase SasA compare
MPMX19_03595 +0.5 3.0 C4-dicarboxylate transport protein 2 compare
MPMX19_06765 +0.5 1.4 Hydrogen peroxide-inducible genes activator compare
MPMX19_06171 +0.5 2.2 hypothetical protein compare
MPMX19_03462 +0.5 1.5 Acetate CoA-transferase subunit alpha compare
MPMX19_04783 +0.5 3.4 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
MPMX19_03000 +0.5 2.0 Galactitol 2-dehydrogenase compare
MPMX19_04087 +0.5 2.1 Flagellum site-determining protein YlxH compare
MPMX19_00860 +0.5 2.0 hypothetical protein compare
MPMX19_00191 +0.5 2.0 hypothetical protein compare
MPMX19_01643 +0.5 2.4 hypothetical protein compare
MPMX19_05016 +0.5 1.1 Sensor histidine kinase RcsC compare
MPMX19_05280 +0.5 2.9 hypothetical protein compare
MPMX19_03014 +0.5 2.1 Transcriptional activatory protein AadR compare
MPMX19_02745 +0.5 1.5 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
MPMX19_00866 +0.5 3.2 Flagellar biosynthetic protein FliR compare
MPMX19_04687 +0.5 1.6 Atrazine chlorohydrolase compare
MPMX19_04093 +0.5 1.9 hypothetical protein compare
MPMX19_00822 +0.5 2.6 Divalent metal cation transporter MntH compare
MPMX19_01117 +0.5 2.0 GTPase HflX compare
MPMX19_03934 +0.5 1.2 hypothetical protein compare
MPMX19_05235 +0.5 1.9 HTH-type transcriptional regulator BetI compare
MPMX19_01480 +0.5 2.2 hypothetical protein compare
MPMX19_05190 +0.5 2.3 putative malonic semialdehyde reductase RutE compare
MPMX19_00244 +0.5 2.3 hypothetical protein compare
MPMX19_02532 +0.5 1.1 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_05878 +0.5 2.9 L-cystine-binding protein FliY compare
MPMX19_05324 +0.5 3.4 hypothetical protein compare
MPMX19_02634 +0.5 2.1 DNA-binding transcriptional regulator BolA compare
MPMX19_01330 +0.5 1.6 3-mercaptopyruvate sulfurtransferase compare
MPMX19_05901 +0.5 1.2 Motility protein B compare
MPMX19_02094 +0.5 1.8 hypothetical protein compare
MPMX19_03085 +0.5 1.2 Hydrogen peroxide-inducible genes activator compare
MPMX19_06646 +0.5 2.1 hypothetical protein compare
MPMX19_01067 +0.5 1.1 hypothetical protein compare
MPMX19_05169 +0.5 3.3 Vitamin B12-binding protein compare
MPMX19_01393 +0.5 2.0 hypothetical protein compare
MPMX19_02492 +0.5 1.7 hypothetical protein compare
MPMX19_00046 +0.5 1.2 hypothetical protein compare
MPMX19_00689 +0.5 1.0 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_04560 +0.5 1.8 hypothetical protein compare
MPMX19_06917 +0.5 1.5 HTH-type transcriptional regulator PgrR compare
MPMX19_00825 +0.5 2.0 hypothetical protein compare
MPMX19_06283 +0.5 2.2 ISL3 family transposase ISAzba9 compare
MPMX19_04633 +0.5 1.7 hypothetical protein compare
MPMX19_05762 +0.4 1.5 hypothetical protein compare
MPMX19_04118 +0.4 1.6 Sensor histidine kinase RcsC compare
MPMX19_00472 +0.4 1.0 Protein HesB, heterocyst compare
MPMX19_06207 +0.4 1.7 hypothetical protein compare
MPMX19_05342 +0.4 1.8 hypothetical protein compare
MPMX19_01757 +0.4 2.4 Ferredoxin--NADP reductase compare
MPMX19_04149 +0.4 1.2 hypothetical protein compare
MPMX19_03635 +0.4 0.5 DNA-binding transcriptional activator DecR compare
MPMX19_02876 +0.4 1.7 hypothetical protein compare
MPMX19_00011 +0.4 2.5 Adaptive-response sensory-kinase SasA compare
MPMX19_01383 +0.4 2.4 putative NTE family protein compare
MPMX19_01217 +0.4 1.5 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_05548 +0.4 1.6 D-methionine transport system permease protein MetI compare
MPMX19_03092 +0.4 2.3 High-affinity zinc uptake system membrane protein ZnuB compare
MPMX19_01596 +0.4 1.6 hypothetical protein compare
MPMX19_04668 +0.4 0.8 HTH-type transcriptional regulator DmlR compare
MPMX19_04204 +0.4 2.9 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_01481 +0.4 3.6 Flagellar motor switch protein FliM compare
MPMX19_03287 +0.4 2.0 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_06545 +0.4 3.8 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_06495 +0.4 1.9 hypothetical protein compare
MPMX19_06547 +0.4 1.8 hypothetical protein compare
MPMX19_06518 +0.4 2.1 Methionine import system permease protein MetP compare
MPMX19_06260 +0.4 2.0 hypothetical protein compare
MPMX19_03862 +0.4 1.6 hypothetical protein compare
MPMX19_02538 +0.4 0.8 hypothetical protein compare
MPMX19_02092 +0.4 1.4 hypothetical protein compare
MPMX19_02309 +0.4 2.2 hypothetical protein compare
MPMX19_04635 +0.4 1.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00858 +0.4 2.1 Flagellar biosynthetic protein FliP compare
MPMX19_04092 +0.4 2.8 Flagellar motor switch protein FliN compare
MPMX19_06235 +0.4 1.0 Glycine cleavage system transcriptional activator compare
MPMX19_06525 +0.4 2.1 Adenine deaminase compare
MPMX19_04101 +0.4 2.5 hypothetical protein compare
MPMX19_02189 +0.4 2.4 hypothetical protein compare
MPMX19_03786 +0.4 1.8 hypothetical protein compare
MPMX19_05575 +0.4 1.5 hypothetical protein compare
MPMX19_00517 +0.4 1.8 HTH-type transcriptional activator AmpR compare
MPMX19_06264 +0.4 1.9 hypothetical protein compare
MPMX19_06791 +0.4 1.9 Leucine-responsive regulatory protein compare
MPMX19_00863 +0.4 2.5 Flagellar basal-body rod protein FlgC compare
MPMX19_06967 +0.4 1.0 hypothetical protein compare
MPMX19_03169 +0.4 1.1 Dihydroanticapsin 7-dehydrogenase compare
MPMX19_06521 +0.4 1.6 Putative aliphatic sulfonates-binding protein compare
MPMX19_03116 +0.4 1.0 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_05220 +0.4 1.0 hypothetical protein compare
MPMX19_02757 +0.4 1.7 Glutathione transport system permease protein GsiD compare
MPMX19_00464 +0.4 1.7 Ferredoxin-like protein FixX compare
MPMX19_04631 +0.4 2.7 hypothetical protein compare
MPMX19_06399 +0.4 1.3 hypothetical protein compare
MPMX19_04438 +0.4 2.3 hypothetical protein compare
MPMX19_05096 +0.4 1.7 L-cystine import ATP-binding protein TcyC compare
MPMX19_01718 +0.4 0.8 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_02484 +0.4 0.6 Heat-inducible transcription repressor HrcA compare
MPMX19_05038 +0.4 1.5 ATP synthase epsilon chain compare
MPMX19_02127 +0.4 2.5 hypothetical protein compare
MPMX19_04198 +0.4 3.1 hypothetical protein compare
MPMX19_02703 +0.4 1.0 hypothetical protein compare
MPMX19_03866 +0.4 1.0 Ribose import permease protein RbsC compare
MPMX19_06460 +0.4 1.1 DNA-invertase hin compare
MPMX19_00206 +0.4 2.8 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_01159 +0.4 3.2 Presqualene diphosphate synthase compare
MPMX19_05779 +0.4 1.2 Beta-ketoadipyl-CoA thiolase compare
MPMX19_01950 +0.4 2.3 hypothetical protein compare
MPMX19_05622 +0.4 2.9 Sensor histidine kinase RegB compare
MPMX19_03610 +0.4 1.4 Hexitol phosphatase A compare
MPMX19_06012 +0.4 1.8 Transcriptional regulatory protein DegU compare
MPMX19_06230 +0.4 0.9 hypothetical protein compare
MPMX19_04090 +0.4 2.7 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_02106 +0.4 2.2 hypothetical protein compare
MPMX19_05032 +0.4 2.5 ATP synthase subunit alpha compare
MPMX19_04223 +0.4 3.3 hypothetical protein compare
MPMX19_04990 +0.4 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_04711 +0.4 1.9 Formyltetrahydrofolate deformylase compare
MPMX19_06471 +0.4 1.3 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_06279 +0.4 1.7 L-threonine kinase compare
MPMX19_05850 +0.4 1.0 hypothetical protein compare
MPMX19_01755 +0.4 1.4 hypothetical protein compare
MPMX19_04686 +0.4 1.8 Maleate isomerase compare
MPMX19_05980 +0.4 2.6 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_04199 +0.4 2.5 Pseudaminic acid synthase compare
MPMX19_03268 +0.4 1.4 HTH-type transcriptional regulator DegA compare
MPMX19_05598 +0.4 1.9 hypothetical protein compare
MPMX19_05911 +0.4 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms