Experiment set1S397 for Phocaeicola dorei CL03T12C01

Compare to:

Dextrin from potato starch carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02975 -8.3 -11.1 argininosuccinate synthase compare
ABI39_RS11840 -7.6 -5.2 histidinol-phosphate transaminase compare
ABI39_RS02980 -7.5 -10.3 N-acetyltransferase compare
ABI39_RS04685 -7.5 -7.5 acetylglutamate kinase compare
ABI39_RS02970 -7.3 -12.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10510 -7.1 -12.0 prephenate dehydratase compare
ABI39_RS16910 -7.0 -12.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS12675 -7.0 -6.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS10495 -7.0 -9.6 prephenate dehydrogenase compare
ABI39_RS10435 -7.0 -12.4 cofactor-independent phosphoglycerate mutase compare
ABI39_RS00405 -6.8 -15.5 phosphoribosylformylglycinamidine synthase compare
ABI39_RS07095 -6.7 -22.5 argininosuccinate lyase compare
ABI39_RS11830 -6.7 -6.5 ATP phosphoribosyltransferase compare
ABI39_RS12665 -6.6 -7.9 shikimate dehydrogenase compare
ABI39_RS02315 -6.5 -9.9 IMP dehydrogenase compare
ABI39_RS04245 -6.4 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS07005 -6.3 -7.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS04425 -6.3 -18.3 hypothetical protein compare
ABI39_RS05660 -6.2 -13.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS04455 -6.2 -22.7 TonB-dependent receptor compare
ABI39_RS10205 -6.2 -6.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS12720 -6.2 -16.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS11835 -6.2 -8.4 histidinol dehydrogenase compare
ABI39_RS00770 -6.1 -14.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10500 -6.1 -7.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12645 -6.1 -13.6 chorismate synthase compare
ABI39_RS02870 -6.0 -7.4 acetylornithine carbamoyltransferase compare
ABI39_RS02875 -6.0 -11.0 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10260 -6.0 -12.2 adenylosuccinate synthase compare
ABI39_RS12715 -5.9 -16.3 dihydroxy-acid dehydratase compare
ABI39_RS04795 -5.9 -4.1 M28 family peptidase compare
ABI39_RS10430 -5.9 -16.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS11845 -5.9 -10.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02880 -5.8 -13.0 glutamate 5-kinase compare
ABI39_RS10215 -5.8 -13.8 3-isopropylmalate dehydrogenase compare
ABI39_RS06055 -5.8 -11.1 phosphoribosylamine--glycine ligase compare
ABI39_RS10195 -5.8 -7.3 2-isopropylmalate synthase compare
ABI39_RS16905 -5.7 -12.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS04460 -5.7 -14.8 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS10200 -5.6 -14.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS21045 -5.6 -7.9 tryptophan synthase subunit beta compare
ABI39_RS21060 -5.6 -10.2 anthranilate phosphoribosyltransferase compare
ABI39_RS04695 -5.5 -7.6 shikimate kinase compare
ABI39_RS12735 -5.5 -9.7 ketol-acid reductoisomerase compare
ABI39_RS19930 -5.5 -6.4 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS19920 -5.4 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS19935 -5.4 -10.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS02960 -5.3 -13.1 pyrroline-5-carboxylate reductase compare
ABI39_RS12725 -5.3 -6.4 acetolactate synthase small subunit compare
ABI39_RS21065 -5.3 -9.4 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS21075 -5.3 -9.2 tryptophan synthase subunit alpha compare
ABI39_RS07790 -5.2 -7.5 M20 family metallo-hydrolase compare
ABI39_RS09685 -5.2 -3.5 hypothetical protein compare
ABI39_RS10440 -5.0 -10.1 threonine synthase compare
ABI39_RS19925 -4.9 -7.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS01300 -4.9 -14.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS02500 -4.9 -10.9 pyridoxine 5'-phosphate synthase compare
ABI39_RS00205 -4.8 -3.3 phosphoglucosamine mutase compare
ABI39_RS10210 -4.8 -12.5 2-isopropylmalate synthase compare
ABI39_RS06670 -4.8 -15.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS10505 -4.8 -13.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12770 -4.7 -3.2 hypothetical protein compare
ABI39_RS14560 -4.6 -5.5 aspartate 1-decarboxylase compare
ABI39_RS17420 -4.6 -10.7 serine hydroxymethyltransferase compare
ABI39_RS06675 -4.5 -11.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS08035 -4.5 -3.1 adenylosuccinate lyase compare
ABI39_RS00475 -4.5 -7.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS09575 -4.5 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS17950 -4.5 -3.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS05175 -4.4 -10.5 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS04885 -4.3 -4.2 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS21050 -4.2 -8.1 anthranilate synthase component I family protein compare
ABI39_RS10870 -4.2 -13.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS17140 -4.1 -4.0 AAA family ATPase compare
ABI39_RS06250 -4.1 -18.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS18745 -4.1 -8.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS12955 -4.1 -5.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS19985 -4.0 -3.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS17170 -4.0 -3.9 protein BatD compare
ABI39_RS02965 -4.0 -15.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10640 -3.9 -15.9 serine dehydratase subunit alpha family protein compare
ABI39_RS01415 -3.7 -3.6 branched-chain amino acid aminotransferase compare
ABI39_RS17175 -3.7 -7.8 tetratricopeptide repeat protein compare
ABI39_RS08195 -3.5 -8.3 hypothetical protein compare
ABI39_RS19945 -3.5 -10.9 aspartate kinase compare
ABI39_RS02755 -3.5 -4.8 glycosyltransferase compare
ABI39_RS19950 -3.5 -4.8 diaminopimelate decarboxylase compare
ABI39_RS01360 -3.5 -10.5 hypothetical protein compare
ABI39_RS17160 -3.4 -4.0 VWA domain-containing protein compare
ABI39_RS10110 -3.4 -12.9 S9 family peptidase compare
ABI39_RS02290 -3.2 -4.5 hypothetical protein compare
ABI39_RS04860 -3.1 -2.7 HigA family addiction module antidote protein compare
ABI39_RS12755 -3.1 -4.2 SurA N-terminal domain-containing protein compare
ABI39_RS17315 -3.1 -13.1 alpha amylase C-terminal domain-containing protein compare
ABI39_RS04505 -3.1 -9.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS07090 -3.0 -2.2 hypothetical protein compare
ABI39_RS09845 -3.0 -2.9 (d)CMP kinase compare
ABI39_RS06995 -3.0 -8.9 tetratricopeptide repeat protein compare
ABI39_RS04230 -2.9 -7.0 RNA polymerase factor sigma-54 compare
ABI39_RS18330 -2.9 -13.3 PD40 domain-containing protein compare
ABI39_RS04700 -2.9 -4.4 type I DNA topoisomerase compare
ABI39_RS21350 -2.9 -2.0 aspartate--ammonia ligase compare
ABI39_RS09850 -2.8 -6.3 energy transducer TonB compare
ABI39_RS04690 -2.7 -7.1 biosynthetic arginine decarboxylase compare
ABI39_RS19385 -2.7 -4.7 hypothetical protein compare
ABI39_RS17945 -2.7 -12.4 glutamine synthetase III compare
ABI39_RS15410 -2.7 -7.9 DUF4296 domain-containing protein compare
ABI39_RS21055 -2.6 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS18300 -2.6 -4.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS08305 -2.6 -8.6 DUF4831 family protein compare
ABI39_RS17150 -2.6 -4.6 hypothetical protein compare
ABI39_RS17640 -2.6 -5.8 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS13000 -2.5 -6.9 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS07010 -2.4 -3.6 pyruvate kinase compare
ABI39_RS14225 -2.4 -11.5 glycosyltransferase compare
ABI39_RS11405 -2.4 -9.4 hypothetical protein compare
ABI39_RS04430 -2.3 -5.7 glycoside hydrolase family 13 protein compare
ABI39_RS16870 -2.2 -3.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS17195 -2.1 -10.3 hypothetical protein compare
ABI39_RS15415 -2.1 -6.8 hypothetical protein compare
ABI39_RS06010 -2.1 -10.1 polysaccharide deacetylase family protein compare
ABI39_RS04970 -2.0 -4.9 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS02470 -2.0 -5.8 ATP-dependent DNA helicase RecG compare
ABI39_RS06380 -1.9 -7.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS20175 -1.9 -3.8 translation elongation factor 4 compare
ABI39_RS09195 -1.9 -1.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS12420 -1.9 -7.2 OadG family protein compare
ABI39_RS05450 -1.9 -4.9 redox-regulated ATPase YchF compare
ABI39_RS12560 -1.8 -10.7 GGGtGRT protein compare
ABI39_RS00515 -1.8 -3.9 hypothetical protein compare
ABI39_RS00410 -1.8 -3.7 response regulator compare
ABI39_RS12565 -1.8 -8.0 hypothetical protein compare
ABI39_RS12425 -1.8 -10.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS18910 -1.8 -2.0 preprotein translocase subunit YajC compare
ABI39_RS04435 -1.8 -15.1 glycoside hydrolase family 97 protein compare
ABI39_RS09855 -1.8 -5.5 polyprenyl synthetase family protein compare
ABI39_RS00520 -1.8 -9.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS14240 -1.8 -5.2 biotin synthase BioB compare
ABI39_RS11670 -1.8 -2.9 molecular chaperone DnaJ compare
ABI39_RS01650 -1.7 -8.6 methylmalonyl-CoA mutase small subunit compare
ABI39_RS12415 -1.7 -5.1 biotin/lipoyl-binding protein compare
ABI39_RS12945 -1.7 -3.8 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS10650 -1.6 -11.5 AraC family transcriptional regulator compare
ABI39_RS17320 -1.6 -2.5 YhcH/YjgK/YiaL family protein compare
ABI39_RS11655 -1.6 -3.6 MFS transporter compare
ABI39_RS01655 -1.6 -10.2 methylmalonyl-CoA mutase compare
ABI39_RS02985 -1.6 -3.9 arginine repressor compare
ABI39_RS08850 -1.5 -5.7 toprim domain-containing protein compare
ABI39_RS15265 -1.5 -2.8 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS13180 -1.5 -4.0 FAD:protein FMN transferase compare
ABI39_RS01325 -1.5 -8.8 phosphoenolpyruvate synthase compare
ABI39_RS14250 -1.5 -8.0 8-amino-7-oxononanoate synthase compare
ABI39_RS20615 -1.5 -8.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS06115 -1.5 -9.4 phosphatase PAP2 family protein compare
ABI39_RS14030 -1.5 -3.3 MFS transporter compare
ABI39_RS14265 -1.5 -5.7 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS14245 -1.4 -10.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS04280 -1.4 -3.8 DUF4292 domain-containing protein compare
ABI39_RS06060 -1.4 -3.9 S9 family peptidase compare
ABI39_RS04930 -1.4 -3.4 helix-turn-helix transcriptional regulator compare
ABI39_RS13225 -1.4 -2.7 phosphopyruvate hydratase compare
ABI39_RS06920 -1.4 -7.1 glycosyltransferase compare
ABI39_RS14255 -1.4 -5.0 DUF452 family protein compare
ABI39_RS04285 -1.3 -7.0 tetratricopeptide repeat protein compare
ABI39_RS15855 -1.3 -3.6 helix-turn-helix transcriptional regulator compare
ABI39_RS14260 -1.3 -7.9 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS15320 -1.3 -8.7 PorT family protein compare
ABI39_RS06050 -1.3 -2.6 hypothetical protein compare
ABI39_RS16895 -1.3 -3.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS19915 -1.3 -5.7 formyltetrahydrofolate deformylase compare
ABI39_RS16040 -1.3 -1.3 hypothetical protein compare
ABI39_RS14235 -1.3 -3.8 hypothetical protein compare
ABI39_RS03880 -1.3 -9.8 PDZ domain-containing protein compare
ABI39_RS12980 -1.2 -2.9 HAD family hydrolase compare
ABI39_RS18740 -1.2 -5.2 ATP-binding protein compare
ABI39_RS11940 -1.2 -9.2 saccharopine dehydrogenase family protein compare
ABI39_RS14230 -1.2 -9.2 alpha-amylase compare
ABI39_RS08145 -1.2 -2.3 DUF4290 domain-containing protein compare
ABI39_RS12670 -1.2 -4.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS17780 -1.2 -6.3 HesA/MoeB/ThiF family protein compare
ABI39_RS16885 -1.2 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS17775 -1.2 -8.0 2-iminoacetate synthase ThiH compare
ABI39_RS15360 -1.2 -4.5 Na+/H+ antiporter NhaC family protein compare
ABI39_RS16880 -1.1 -3.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS20930 -1.1 -7.4 tetratricopeptide repeat protein compare
ABI39_RS09230 -1.1 -2.6 hypothetical protein compare
ABI39_RS17765 -1.1 -3.0 hypothetical protein compare
ABI39_RS13150 -1.1 -7.2 S41 family peptidase compare
ABI39_RS06925 -1.1 -8.6 glycosyltransferase compare
ABI39_RS17755 -1.1 -3.3 thiazole synthase compare
ABI39_RS02355 -1.1 -4.8 ABC transporter ATP-binding protein compare
ABI39_RS09835 -1.1 -6.8 6-phosphofructokinase compare
ABI39_RS09515 -1.1 -2.4 nucleoside deaminase compare
ABI39_RS02350 -1.1 -6.6 ABC transporter permease compare
ABI39_RS20410 -1.0 -3.7 GDP-mannose 4,6-dehydratase compare
ABI39_RS09245 -1.0 -7.0 cardiolipin synthase compare
ABI39_RS02480 -1.0 -1.8 DJ-1/PfpI family protein compare
ABI39_RS12970 -1.0 -4.6 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS20070 -1.0 -4.5 UDP-glucose 4-epimerase GalE compare
ABI39_RS09285 -1.0 -2.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Dextrin from potato starch across organisms