Experiment set1S395 for Phocaeicola dorei CL03T12C01

Compare to:

Mucin from porcine stomach,Type II carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS09685 -4.7 -3.2 hypothetical protein compare
ABI39_RS04230 -4.4 -5.3 RNA polymerase factor sigma-54 compare
ABI39_RS17950 -4.4 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS18910 -4.1 -2.8 preprotein translocase subunit YajC compare
ABI39_RS19385 -4.0 -4.3 hypothetical protein compare
ABI39_RS04795 -3.9 -2.6 M28 family peptidase compare
ABI39_RS11735 -3.3 -4.5 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS02290 -3.2 -3.1 hypothetical protein compare
ABI39_RS17170 -3.2 -4.3 protein BatD compare
ABI39_RS17140 -3.2 -4.3 AAA family ATPase compare
ABI39_RS17150 -3.1 -5.6 hypothetical protein compare
ABI39_RS12755 -3.1 -3.6 SurA N-terminal domain-containing protein compare
ABI39_RS02755 -2.9 -4.0 glycosyltransferase compare
ABI39_RS00205 -2.8 -5.0 phosphoglucosamine mutase compare
ABI39_RS04280 -2.8 -5.2 DUF4292 domain-containing protein compare
ABI39_RS21350 -2.7 -1.8 aspartate--ammonia ligase compare
ABI39_RS16870 -2.7 -4.0 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS17640 -2.5 -5.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17160 -2.5 -3.7 VWA domain-containing protein compare
ABI39_RS09845 -2.5 -2.4 (d)CMP kinase compare
ABI39_RS00410 -2.3 -3.1 response regulator compare
ABI39_RS11655 -2.2 -4.2 MFS transporter compare
ABI39_RS11670 -2.1 -2.5 molecular chaperone DnaJ compare
ABI39_RS12420 -2.1 -3.9 OadG family protein compare
ABI39_RS16895 -2.1 -3.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS09850 -2.0 -4.6 energy transducer TonB compare
ABI39_RS17195 -2.0 -8.9 hypothetical protein compare
ABI39_RS04860 -2.0 -5.0 HigA family addiction module antidote protein compare
ABI39_RS12425 -1.9 -8.1 acyl-CoA carboxylase subunit beta compare
ABI39_RS12415 -1.9 -3.8 biotin/lipoyl-binding protein compare
ABI39_RS12770 -1.9 -3.1 hypothetical protein compare
ABI39_RS19985 -1.9 -1.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09575 -1.9 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS13185 -1.9 -2.8 manganese efflux pump compare
ABI39_RS16875 -1.9 -3.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS20070 -1.9 -4.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS18745 -1.8 -5.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS07010 -1.8 -2.2 pyruvate kinase compare
ABI39_RS15775 -1.8 -1.8 hypothetical protein compare
ABI39_RS06380 -1.8 -5.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS13000 -1.8 -3.7 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS01655 -1.8 -7.1 methylmalonyl-CoA mutase compare
ABI39_RS09515 -1.7 -2.5 nucleoside deaminase compare
ABI39_RS04700 -1.7 -3.6 type I DNA topoisomerase compare
ABI39_RS20965 -1.6 -2.8 SPOR domain-containing protein compare
ABI39_RS06920 -1.6 -4.2 glycosyltransferase compare
ABI39_RS22955 -1.6 -3.0 hypothetical protein compare
ABI39_RS13180 -1.6 -4.1 FAD:protein FMN transferase compare
ABI39_RS15010 -1.6 -2.8 F0F1 ATP synthase subunit gamma compare
ABI39_RS12780 -1.6 -2.6 type III pantothenate kinase compare
ABI39_RS01650 -1.6 -5.7 methylmalonyl-CoA mutase small subunit compare
ABI39_RS15265 -1.6 -2.4 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS20915 -1.6 -1.7 50S ribosomal protein L35 compare
ABI39_RS16700 -1.6 -3.9 agmatine deiminase family protein compare
ABI39_RS17175 -1.5 -4.7 tetratricopeptide repeat protein compare
ABI39_RS02350 -1.5 -5.9 ABC transporter permease compare
ABI39_RS04885 -1.5 -3.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS14030 -1.5 -3.5 MFS transporter compare
ABI39_RS09230 -1.4 -2.4 hypothetical protein compare
ABI39_RS16885 -1.4 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS04970 -1.3 -3.7 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS00090 -1.3 -3.7 HAMP domain-containing histidine kinase compare
ABI39_RS11785 -1.3 -4.0 TolC family protein compare
ABI39_RS14225 -1.3 -6.7 glycosyltransferase compare
ABI39_RS15410 -1.3 -4.6 DUF4296 domain-containing protein compare
ABI39_RS18300 -1.3 -3.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS09830 -1.3 -5.1 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS14230 -1.2 -7.1 alpha-amylase compare
ABI39_RS18345 -1.2 -7.1 nucleoside phosphorylase compare
ABI39_RS11635 -1.2 -4.8 NUDIX hydrolase compare
ABI39_RS02140 -1.2 -1.2 TetR/AcrR family transcriptional regulator compare
ABI39_RS05660 -1.2 -4.7 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS12430 -1.2 -1.2 methylmalonyl-CoA epimerase compare
ABI39_RS11405 -1.2 -5.1 hypothetical protein compare
ABI39_RS18420 -1.2 -2.8 helix-turn-helix transcriptional regulator compare
ABI39_RS02285 -1.2 -2.0 DNA mismatch repair endonuclease MutL compare
ABI39_RS19950 -1.1 -2.8 diaminopimelate decarboxylase compare
ABI39_RS10460 -1.1 -5.1 ABC transporter substrate-binding protein compare
ABI39_RS10470 -1.1 -8.4 hypothetical protein compare
ABI39_RS18160 -1.1 -6.6 MFS transporter compare
ABI39_RS12645 -1.1 -6.6 chorismate synthase compare
ABI39_RS06675 -1.1 -5.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS11875 -1.1 -5.5 OmpH family outer membrane protein compare
ABI39_RS10105 -1.1 -2.8 lipoyl synthase compare
ABI39_RS22855 -1.1 -2.2 hypothetical protein compare
ABI39_RS18355 -1.1 -5.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABI39_RS10455 -1.0 -5.0 iron ABC transporter permease compare
ABI39_RS03830 -1.0 -0.9 ribosome-associated translation inhibitor RaiA compare
ABI39_RS10380 -1.0 -2.2 helix-turn-helix transcriptional regulator compare
ABI39_RS12955 -1.0 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS05450 -1.0 -2.6 redox-regulated ATPase YchF compare
ABI39_RS11975 -1.0 -1.5 polysaccharide export protein compare
ABI39_RS17205 -1.0 -1.8 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06670 -1.0 -7.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS15770 -1.0 -1.7 hypothetical protein compare
ABI39_RS09285 -1.0 -1.9 hypothetical protein compare
ABI39_RS16880 -1.0 -2.5 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS01330 -1.0 -6.6 NADP-specific glutamate dehydrogenase conserved
ABI39_RS06620 -1.0 -2.5 HU family DNA-binding protein compare
ABI39_RS04930 -1.0 -2.9 helix-turn-helix transcriptional regulator compare
ABI39_RS17315 -1.0 -6.0 alpha amylase C-terminal domain-containing protein compare
ABI39_RS20085 -1.0 -3.3 electron transport complex subunit E compare
ABI39_RS12665 -1.0 -4.1 shikimate dehydrogenase compare
ABI39_RS00515 -1.0 -1.4 hypothetical protein compare
ABI39_RS05650 -1.0 -5.2 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABI39_RS13010 -1.0 -4.1 hypothetical protein compare
ABI39_RS20395 -1.0 -3.1 DedA family protein compare
ABI39_RS14220 -1.0 -5.8 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS00240 -0.9 -2.7 NigD-like N-terminal domain-containing protein compare
ABI39_RS10475 -0.9 -7.5 TonB-dependent receptor compare
ABI39_RS02125 -0.9 -1.1 hypothetical protein compare
ABI39_RS05280 -0.9 -6.7 S41 family peptidase compare
ABI39_RS06050 -0.9 -1.5 hypothetical protein compare
ABI39_RS20095 -0.9 -5.4 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS05405 -0.9 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS11805 -0.9 -1.1 hypothetical protein compare
ABI39_RS16905 -0.9 -5.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS03565 -0.9 -1.3 hypothetical protein compare
ABI39_RS19075 -0.9 -2.0 hypothetical protein compare
ABI39_RS06250 -0.9 -6.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS19580 -0.9 -2.2 hypothetical protein compare
ABI39_RS18320 -0.9 -1.2 hypothetical protein compare
ABI39_RS15400 -0.9 -3.6 TraR/DksA C4-type zinc finger protein compare
ABI39_RS04285 -0.9 -4.2 tetratricopeptide repeat protein compare
ABI39_RS19870 -0.9 -1.2 hypothetical protein compare
ABI39_RS10450 -0.9 -2.2 ABC transporter ATP-binding protein compare
ABI39_RS04730 -0.9 -1.5 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS12980 -0.8 -1.9 HAD family hydrolase compare
ABI39_RS12965 -0.8 -4.5 hypothetical protein compare
ABI39_RS09915 -0.8 -2.6 DUF5056 domain-containing protein compare
ABI39_RS14375 -0.8 -1.8 DUF4492 domain-containing protein compare
ABI39_RS22820 -0.8 -0.9 hypothetical protein compare
ABI39_RS00105 -0.8 -0.9 hypothetical protein compare
ABI39_RS18170 -0.8 -1.1 hypothetical protein compare
ABI39_RS11185 -0.8 -1.1 DUF3408 domain-containing protein compare
ABI39_RS14465 -0.8 -5.0 hypothetical protein compare
ABI39_RS17755 -0.8 -2.1 thiazole synthase compare
ABI39_RS13150 -0.8 -4.3 S41 family peptidase compare
ABI39_RS17850 -0.8 -3.6 alpha-glucan family phosphorylase compare
ABI39_RS20080 -0.8 -4.0 electron transport complex subunit RsxA compare
ABI39_RS16910 -0.8 -3.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS08555 -0.8 -2.4 Trk system potassium transporter TrkA compare
ABI39_RS07420 -0.8 -3.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS02070 -0.8 -1.4 SDR family oxidoreductase compare
ABI39_RS07915 -0.8 -4.5 purine-nucleoside phosphorylase compare
ABI39_RS20220 -0.8 -2.1 DNA-binding protein compare
ABI39_RS01360 -0.8 -3.5 hypothetical protein compare
ABI39_RS07835 -0.8 -3.6 alkaline phosphatase compare
ABI39_RS07005 -0.8 -2.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS08810 -0.8 -1.1 DUF3876 domain-containing protein compare
ABI39_RS15820 -0.8 -1.7 hypothetical protein compare
ABI39_RS10110 -0.8 -4.4 S9 family peptidase compare
ABI39_RS20100 -0.8 -4.3 electron transport complex subunit RsxC compare
ABI39_RS18350 -0.8 -1.8 GAF domain-containing protein compare
ABI39_RS06995 -0.8 -3.3 tetratricopeptide repeat protein compare
ABI39_RS06925 -0.7 -4.6 glycosyltransferase compare
ABI39_RS16320 -0.7 -1.1 DUF3989 domain-containing protein compare
ABI39_RS22870 -0.7 -1.9 aldo/keto reductase compare
ABI39_RS00745 -0.7 -1.1 tRNA-Met compare
ABI39_RS15255 -0.7 -2.0 hypothetical protein compare
ABI39_RS03880 -0.7 -5.1 PDZ domain-containing protein compare
ABI39_RS16915 -0.7 -5.4 DUF1015 domain-containing protein compare
ABI39_RS08770 -0.7 -1.3 hypothetical protein compare
ABI39_RS17245 -0.7 -1.6 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
ABI39_RS02500 -0.7 -3.5 pyridoxine 5'-phosphate synthase compare
ABI39_RS06130 -0.7 -4.0 U32 family peptidase compare
ABI39_RS13970 -0.7 -2.1 helix-turn-helix domain-containing protein compare
ABI39_RS03170 -0.7 -0.6 plasmid mobilization relaxosome protein MobC compare
ABI39_RS20090 -0.7 -3.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS16385 -0.7 -0.7 hypothetical protein compare
ABI39_RS09280 -0.7 -2.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
ABI39_RS00520 -0.7 -3.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS07910 -0.7 -3.1 thiamine-phosphate kinase compare
ABI39_RS04675 -0.7 -1.1 hypothetical protein compare
ABI39_RS21195 -0.7 -3.1 AGE family epimerase/isomerase compare
ABI39_RS16760 -0.7 -1.2 hypothetical protein compare
ABI39_RS15320 -0.7 -4.6 PorT family protein compare
ABI39_RS19475 -0.7 -1.9 hypothetical protein compare
ABI39_RS12410 -0.7 -2.7 sodium ion-translocating decarboxylase subunit beta compare
ABI39_RS12945 -0.7 -3.0 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS15855 -0.7 -1.9 helix-turn-helix transcriptional regulator compare
ABI39_RS04745 -0.7 -0.8 hypothetical protein compare
ABI39_RS01825 -0.7 -3.2 cyclodeaminase/cyclohydrolase family protein compare
ABI39_RS20435 -0.7 -2.9 chain-length determining protein compare
ABI39_RS07090 -0.7 -2.8 hypothetical protein compare
ABI39_RS16240 -0.7 -1.7 ParA family protein compare
ABI39_RS15340 -0.7 -3.7 peptide MFS transporter compare
ABI39_RS06115 -0.7 -3.3 phosphatase PAP2 family protein compare
ABI39_RS18340 -0.7 -3.3 flotillin-like protein FloA compare
ABI39_RS16235 -0.7 -1.1 hypothetical protein compare
ABI39_RS11260 -0.7 -0.9 DUF4348 domain-containing protein compare
ABI39_RS04430 -0.7 -4.4 glycoside hydrolase family 13 protein compare
ABI39_RS21500 -0.7 -3.5 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS08255 -0.7 -3.2 DUF3256 family protein compare
ABI39_RS20105 -0.7 -3.0 Fe-S cluster domain-containing protein compare
ABI39_RS17465 -0.7 -4.2 DUF3078 domain-containing protein compare
ABI39_RS06010 -0.6 -3.3 polysaccharide deacetylase family protein compare
ABI39_RS18660 -0.6 -0.9 Hsp20/alpha crystallin family protein compare
ABI39_RS12960 -0.6 -4.4 NDP-sugar synthase compare
ABI39_RS19775 -0.6 -1.1 tRNA-Met compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Mucin from porcine stomach,Type II in Phocaeicola dorei CL03T12C01

For carbon source Mucin from porcine stomach,Type II across organisms