Experiment set1S394 for Phocaeicola dorei CL03T12C01

Compare to:

polygalacturonic acid (ultrapure) carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS00405 -8.1 -17.4 phosphoribosylformylglycinamidine synthase compare
ABI39_RS00475 -8.0 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02980 -8.0 -9.0 N-acetyltransferase compare
ABI39_RS16910 -7.9 -9.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS10510 -7.8 -10.7 prephenate dehydratase compare
ABI39_RS19925 -7.7 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10205 -7.7 -5.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS04695 -7.6 -7.4 shikimate kinase compare
ABI39_RS04685 -7.2 -7.3 acetylglutamate kinase compare
ABI39_RS16905 -7.0 -13.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10495 -7.0 -9.6 prephenate dehydrogenase compare
ABI39_RS21065 -7.0 -9.0 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12675 -7.0 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS12720 -6.9 -14.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS02975 -6.8 -8.4 argininosuccinate synthase compare
ABI39_RS00770 -6.7 -13.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS02970 -6.6 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS11835 -6.6 -7.8 histidinol dehydrogenase compare
ABI39_RS12645 -6.5 -15.1 chorismate synthase compare
ABI39_RS02315 -6.5 -8.9 IMP dehydrogenase compare
ABI39_RS10430 -6.3 -16.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS04245 -6.2 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS12715 -6.2 -14.1 dihydroxy-acid dehydratase compare
ABI39_RS06055 -6.2 -9.5 phosphoribosylamine--glycine ligase compare
ABI39_RS07790 -6.1 -8.4 M20 family metallo-hydrolase compare
ABI39_RS10260 -6.0 -9.9 adenylosuccinate synthase compare
ABI39_RS19930 -6.0 -6.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS05660 -6.0 -11.6 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS02870 -6.0 -8.5 acetylornithine carbamoyltransferase compare
ABI39_RS10500 -5.9 -7.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10200 -5.9 -14.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS11845 -5.8 -9.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10440 -5.8 -8.6 threonine synthase compare
ABI39_RS21060 -5.8 -11.2 anthranilate phosphoribosyltransferase compare
ABI39_RS07095 -5.7 -19.9 argininosuccinate lyase compare
ABI39_RS21045 -5.6 -6.9 tryptophan synthase subunit beta compare
ABI39_RS10435 -5.5 -11.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS19935 -5.4 -10.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12665 -5.4 -9.0 shikimate dehydrogenase compare
ABI39_RS12735 -5.4 -8.9 ketol-acid reductoisomerase compare
ABI39_RS02960 -5.3 -13.0 pyrroline-5-carboxylate reductase compare
ABI39_RS02880 -5.3 -11.3 glutamate 5-kinase compare
ABI39_RS02875 -5.3 -11.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS08195 -5.1 -8.4 hypothetical protein compare
ABI39_RS10505 -5.0 -11.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS14560 -5.0 -4.7 aspartate 1-decarboxylase compare
ABI39_RS07005 -5.0 -6.4 type II 3-dehydroquinate dehydratase compare
ABI39_RS10215 -5.0 -14.0 3-isopropylmalate dehydrogenase compare
ABI39_RS21075 -5.0 -6.0 tryptophan synthase subunit alpha compare
ABI39_RS06995 -4.9 -9.9 tetratricopeptide repeat protein compare
ABI39_RS19385 -4.8 -4.7 hypothetical protein compare
ABI39_RS17420 -4.8 -7.4 serine hydroxymethyltransferase compare
ABI39_RS06675 -4.8 -8.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS11830 -4.7 -6.9 ATP phosphoribosyltransferase compare
ABI39_RS10110 -4.7 -14.8 S9 family peptidase compare
ABI39_RS04280 -4.7 -7.2 DUF4292 domain-containing protein compare
ABI39_RS06670 -4.7 -14.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS08305 -4.6 -7.1 DUF4831 family protein compare
ABI39_RS00205 -4.6 -3.2 phosphoglucosamine mutase compare
ABI39_RS15380 -4.6 -4.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS01360 -4.4 -9.6 hypothetical protein compare
ABI39_RS04860 -4.3 -2.9 HigA family addiction module antidote protein compare
ABI39_RS10210 -4.3 -10.3 2-isopropylmalate synthase compare
ABI39_RS11840 -4.3 -6.6 histidinol-phosphate transaminase compare
ABI39_RS02755 -4.2 -2.9 glycosyltransferase compare
ABI39_RS10195 -4.2 -6.2 2-isopropylmalate synthase compare
ABI39_RS19950 -4.2 -2.9 diaminopimelate decarboxylase compare
ABI39_RS21050 -4.2 -7.3 anthranilate synthase component I family protein compare
ABI39_RS01415 -4.1 -2.8 branched-chain amino acid aminotransferase compare
ABI39_RS09575 -4.1 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS18745 -4.0 -7.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS10870 -4.0 -12.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS15410 -4.0 -11.7 DUF4296 domain-containing protein compare
ABI39_RS15375 -4.0 -11.0 sugar kinase compare
ABI39_RS17160 -4.0 -2.7 VWA domain-containing protein compare
ABI39_RS17170 -3.9 -3.8 protein BatD compare
ABI39_RS20965 -3.8 -2.6 SPOR domain-containing protein compare
ABI39_RS07090 -3.8 -2.8 hypothetical protein compare
ABI39_RS17140 -3.7 -4.4 AAA family ATPase compare
ABI39_RS18330 -3.7 -12.1 PD40 domain-containing protein compare
ABI39_RS19920 -3.7 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS01300 -3.6 -11.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS08035 -3.5 -4.2 adenylosuccinate lyase compare
ABI39_RS14225 -3.5 -9.3 glycosyltransferase compare
ABI39_RS12755 -3.5 -2.4 SurA N-terminal domain-containing protein compare
ABI39_RS04690 -3.5 -11.2 biosynthetic arginine decarboxylase compare
ABI39_RS02965 -3.4 -17.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS17175 -3.4 -6.8 tetratricopeptide repeat protein compare
ABI39_RS17950 -3.4 -3.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS05175 -3.3 -7.6 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS12955 -3.3 -5.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS07010 -3.3 -3.2 pyruvate kinase compare
ABI39_RS19985 -3.3 -2.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04795 -3.3 -2.3 M28 family peptidase compare
ABI39_RS17315 -3.2 -12.6 alpha amylase C-terminal domain-containing protein compare
ABI39_RS04700 -3.2 -3.1 type I DNA topoisomerase compare
ABI39_RS15415 -3.2 -7.9 hypothetical protein compare
ABI39_RS17150 -3.2 -5.7 hypothetical protein compare
ABI39_RS01725 -3.2 -3.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS12770 -3.2 -3.7 hypothetical protein compare
ABI39_RS14230 -3.1 -14.6 alpha-amylase compare
ABI39_RS02500 -3.1 -6.7 pyridoxine 5'-phosphate synthase compare
ABI39_RS06380 -3.0 -8.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS04885 -3.0 -5.3 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS20070 -3.0 -8.9 UDP-glucose 4-epimerase GalE compare
ABI39_RS11405 -2.8 -8.1 hypothetical protein compare
ABI39_RS15475 -2.8 -14.0 glucuronate isomerase compare
ABI39_RS06250 -2.7 -13.4 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS06115 -2.7 -10.8 phosphatase PAP2 family protein compare
ABI39_RS21350 -2.7 -1.8 aspartate--ammonia ligase compare
ABI39_RS06010 -2.6 -8.5 polysaccharide deacetylase family protein compare
ABI39_RS13180 -2.6 -6.2 FAD:protein FMN transferase compare
ABI39_RS09845 -2.6 -3.0 (d)CMP kinase compare
ABI39_RS15320 -2.6 -12.3 PorT family protein compare
ABI39_RS19945 -2.5 -9.7 aspartate kinase compare
ABI39_RS11485 -2.5 -3.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS08850 -2.4 -5.2 toprim domain-containing protein compare
ABI39_RS16695 -2.4 -9.6 carbon-nitrogen hydrolase compare
ABI39_RS04930 -2.4 -4.6 helix-turn-helix transcriptional regulator compare
ABI39_RS10640 -2.4 -12.5 serine dehydratase subunit alpha family protein compare
ABI39_RS20090 -2.3 -9.7 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS15365 -2.3 -3.4 altronate dehydratase compare
ABI39_RS15480 -2.3 -9.0 tagaturonate reductase compare
ABI39_RS20080 -2.2 -9.9 electron transport complex subunit RsxA compare
ABI39_RS20085 -2.2 -7.8 electron transport complex subunit E compare
ABI39_RS05280 -2.2 -13.6 S41 family peptidase compare
ABI39_RS21055 -2.2 -5.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS20930 -2.2 -11.7 tetratricopeptide repeat protein compare
ABI39_RS00090 -2.2 -5.7 HAMP domain-containing histidine kinase compare
ABI39_RS17320 -2.2 -1.6 YhcH/YjgK/YiaL family protein compare
ABI39_RS09040 -2.1 -15.6 MFS transporter compare
ABI39_RS17640 -2.1 -5.2 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS04230 -2.1 -5.8 RNA polymerase factor sigma-54 compare
ABI39_RS17195 -2.1 -9.8 hypothetical protein compare
ABI39_RS18300 -2.1 -4.5 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS00410 -2.1 -3.3 response regulator compare
ABI39_RS20095 -2.1 -12.1 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS09245 -2.0 -8.8 cardiolipin synthase compare
ABI39_RS06990 -2.0 -13.5 DUF4369 domain-containing protein compare
ABI39_RS20100 -2.0 -10.3 electron transport complex subunit RsxC compare
ABI39_RS00760 -2.0 -2.7 YjgP/YjgQ family permease compare
ABI39_RS04970 -2.0 -5.2 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS12725 -1.9 -2.9 acetolactate synthase small subunit compare
ABI39_RS06920 -1.9 -7.5 glycosyltransferase compare
ABI39_RS06050 -1.9 -4.2 hypothetical protein compare
ABI39_RS09515 -1.9 -4.1 nucleoside deaminase compare
ABI39_RS15610 -1.8 -1.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS15265 -1.8 -3.0 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS20105 -1.8 -6.3 Fe-S cluster domain-containing protein compare
ABI39_RS13000 -1.8 -3.7 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS20615 -1.8 -9.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS15855 -1.8 -3.2 helix-turn-helix transcriptional regulator compare
ABI39_RS22225 -1.7 -1.2 hypothetical protein compare
ABI39_RS01730 -1.7 -5.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS17750 -1.7 -4.5 thiamine phosphate synthase compare
ABI39_RS16705 -1.7 -12.6 translocation/assembly module TamB compare
ABI39_RS17730 -1.7 -10.1 carboxynorspermidine decarboxylase compare
ABI39_RS14245 -1.7 -8.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS14240 -1.7 -5.6 biotin synthase BioB compare
ABI39_RS11940 -1.7 -10.1 saccharopine dehydrogenase family protein compare
ABI39_RS14220 -1.7 -6.5 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS14150 -1.7 -12.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS17770 -1.7 -5.9 flavodoxin family protein compare
ABI39_RS14265 -1.7 -6.8 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS18740 -1.6 -5.3 ATP-binding protein compare
ABI39_RS01735 -1.6 -5.8 acyl-CoA dehydrogenase family protein compare
ABI39_RS00520 -1.6 -8.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS04285 -1.6 -6.7 tetratricopeptide repeat protein compare
ABI39_RS03880 -1.6 -11.0 PDZ domain-containing protein compare
ABI39_RS08225 -1.6 -10.7 GH32 C-terminal domain-containing protein compare
ABI39_RS07815 -1.6 -1.7 RNA polymerase sigma factor compare
ABI39_RS08240 -1.5 -12.0 substrate-binding domain-containing protein compare
ABI39_RS09195 -1.5 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS12945 -1.5 -3.2 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS15425 -1.5 -10.2 BamA/TamA family outer membrane protein compare
ABI39_RS14260 -1.5 -7.5 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS17775 -1.5 -7.9 2-iminoacetate synthase ThiH compare
ABI39_RS13185 -1.5 -1.8 manganese efflux pump compare
ABI39_RS17945 -1.5 -9.8 glutamine synthetase III compare
ABI39_RS09685 -1.5 -1.6 hypothetical protein compare
ABI39_RS11655 -1.5 -3.3 MFS transporter compare
ABI39_RS02350 -1.4 -5.5 ABC transporter permease compare
ABI39_RS14250 -1.4 -6.1 8-amino-7-oxononanoate synthase compare
ABI39_RS00515 -1.4 -2.3 hypothetical protein compare
ABI39_RS11735 -1.4 -4.3 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS17780 -1.4 -6.2 HesA/MoeB/ThiF family protein compare
ABI39_RS08220 -1.4 -11.2 TonB-dependent receptor compare
ABI39_RS08230 -1.4 -7.8 MFS transporter compare
ABI39_RS13170 -1.4 -9.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS17755 -1.4 -2.0 thiazole synthase compare
ABI39_RS09835 -1.4 -7.5 6-phosphofructokinase compare
ABI39_RS15615 -1.3 -3.8 cysteine-rich CWC family protein compare
ABI39_RS02290 -1.3 -2.8 hypothetical protein compare
ABI39_RS11160 -1.3 -2.7 UpxY family transcription antiterminator compare
ABI39_RS16475 -1.3 -5.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABI39_RS12140 -1.3 -6.0 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
ABI39_RS14255 -1.3 -3.9 DUF452 family protein compare
ABI39_RS16485 -1.2 -1.9 hypothetical protein compare
ABI39_RS06060 -1.2 -3.4 S9 family peptidase compare
ABI39_RS06925 -1.2 -7.6 glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source polygalacturonic acid across organisms