Experiment set1S39 for Pseudomonas sp. DMC3

Compare to:

Sodium D,L-Lactate and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF798 -4.8 -3.3 Amidophosphoribosyltransferase compare
GFF2538 -4.7 -5.6 Phosphoribosylglycinamide formyltransferase compare
GFF3308 -4.1 -2.9 Bifunctional purine biosynthesis protein PurH compare
GFF2539 -4.1 -2.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
GFF1962 -4.0 -2.8 Phosphoribosylformylglycinamidine synthase compare
GFF676 -3.8 -4.5 Tryptophan synthase beta chain compare
GFF485 -3.7 -2.5 N5-carboxyaminoimidazole ribonucleotide synthase compare
GFF20 -3.6 -11.3 Anthranilate synthase component 1 compare
GFF3307 -3.5 -2.4 Phosphoribosylamine--glycine ligase compare
GFF677 -3.5 -4.7 Tryptophan synthase alpha chain compare
GFF793 -3.5 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
GFF2289 -3.5 -2.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
GFF16 -3.2 -7.8 Indole-3-glycerol phosphate synthase compare
GFF4025 -3.1 -6.0 Glucose-6-phosphate isomerase compare
GFF5243 -2.9 -2.9 Outer membrane porin F compare
GFF17 -2.9 -6.4 Anthranilate phosphoribosyltransferase compare
GFF2161 -2.9 -2.0 ATP-dependent DNA helicase DinG compare
GFF411 -2.6 -1.8 Orotate phosphoribosyltransferase compare
GFF5186 -2.5 -3.7 Crossover junction endodeoxyribonuclease RuvC compare
GFF2287 -2.5 -5.6 Outer membrane protein assembly factor BamC compare
GFF1507 -2.0 -2.3 NADH-quinone oxidoreductase subunit G compare
GFF1444 -2.0 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF18 -2.0 -3.7 Anthranilate synthase component 2 compare
GFF1501 -2.0 -2.3 NADH-quinone oxidoreductase subunit M compare
GFF3169 -2.0 -5.6 hypothetical protein compare
GFF4186 -1.9 -3.8 Glutamate--cysteine ligase compare
GFF4913 -1.9 -3.3 RecBCD enzyme subunit RecB compare
GFF4978 -1.9 -3.1 Transcription elongation factor GreA compare
GFF4912 -1.8 -6.2 RecBCD enzyme subunit RecC compare
GFF2945 -1.8 -7.6 UTP--glucose-1-phosphate uridylyltransferase compare
GFF4027 -1.7 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
GFF692 -1.7 -1.6 HTH-type transcriptional repressor RspR compare
GFF4103 -1.7 -2.5 putative Fe(2+)-trafficking protein compare
GFF3166 -1.7 -2.9 D-inositol-3-phosphate glycosyltransferase compare
GFF4914 -1.7 -2.2 RecBCD enzyme subunit RecD compare
GFF4175 -1.6 -4.6 Phosphoenolpyruvate carboxykinase (ATP) compare
GFF3640 -1.6 -2.3 hypothetical protein compare
GFF1811 -1.6 -2.6 Rod shape-determining protein MreD compare
GFF12 -1.6 -10.5 S-adenosylmethionine decarboxylase proenzyme compare
GFF4144 -1.6 -2.1 mRNA interferase toxin YafQ compare
GFF476 -1.5 -4.2 Phosphate import ATP-binding protein PstB compare
GFF1500 -1.5 -2.6 NADH-quinone oxidoreductase subunit N compare
GFF1511 -1.5 -2.3 NADH-quinone oxidoreductase subunit B compare
GFF4030 -1.4 -4.2 Transcriptional regulatory protein ZraR compare
GFF229 -1.4 -2.6 Ribosomal RNA small subunit methyltransferase D compare
GFF4660 -1.4 -4.3 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
GFF3073 -1.3 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
GFF1502 -1.3 -2.2 NADH-quinone oxidoreductase subunit L compare
GFF1279 -1.3 -3.7 hypothetical protein compare
GFF199 -1.3 -3.4 Glutathione synthetase compare
GFF1937 -1.3 -2.2 Glutamine transport ATP-binding protein GlnQ compare
GFF1839 -1.3 -2.4 putative protein compare
GFF407 -1.2 -3.7 Acetylglutamate kinase compare
GFF2111 -1.2 -2.6 Protein RecA compare
GFF3092 -1.2 -6.2 NADP-dependent malic enzyme compare
GFF478 -1.2 -7.2 hypothetical protein compare
GFF4990 -1.2 -3.4 tRNA pseudouridine synthase B compare
GFF2248 -1.2 -1.6 hypothetical protein compare
GFF4359 -1.2 -3.4 Queuine tRNA-ribosyltransferase compare
GFF4862 -1.1 -0.9 hypothetical protein compare
GFF1938 -1.1 -1.6 hypothetical protein compare
GFF744 -1.1 -1.7 Linear gramicidin dehydrogenase LgrE compare
GFF716 -1.1 -2.1 putative copper-importing P-type ATPase A compare
GFF4391 -1.1 -2.5 Protoheme IX farnesyltransferase compare
GFF3568 -1.1 -1.7 hypothetical protein compare
GFF5214 -1.1 -1.8 hypothetical protein compare
GFF4443 -1.1 -3.7 Cell division protein ZapE compare
GFF4759 -1.1 -4.7 Phosphate acyltransferase compare
GFF2642 -1.1 -3.5 Polyamine aminopropyltransferase compare
GFF1831 -1.0 -2.0 Lipopolysaccharide export system protein LptC compare
GFF4394 -1.0 -2.0 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
GFF3826 -1.0 -1.9 Transcriptional repressor NrdR compare
GFF2280 -1.0 -3.2 Periplasmic serine endoprotease DegP compare
GFF44 -1.0 -1.7 Multifunctional CCA protein compare
GFF4287 -1.0 -4.4 hypothetical protein compare
GFF335 -1.0 -3.4 Exopolyphosphatase compare
GFF2001 -1.0 -1.6 hypothetical protein compare
GFF3337 -1.0 -1.6 hypothetical protein compare
GFF3464 -1.0 -1.6 Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperid eine-2-carboxylate reductase compare
GFF5184 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF1443 -0.9 -2.6 ATP-dependent Clp protease proteolytic subunit compare
GFF1169 -0.9 -1.1 hypothetical protein compare
GFF4433 -0.9 -2.2 Stringent starvation protein B compare
GFF4395 -0.9 -3.2 Cytochrome bo(3) ubiquinol oxidase subunit 2 compare
GFF5192 -0.9 -2.9 hypothetical protein compare
GFF479 -0.9 -4.0 Phosphate-binding protein PstS compare
GFF1567 -0.9 -2.1 hypothetical protein compare
GFF4974 -0.9 -2.6 Chaperone protein DnaJ compare
GFF713 -0.9 -5.6 Oxygen-independent coproporphyrinogen III oxidase compare
GFF3234 -0.9 -1.4 50S ribosomal protein L9 compare
GFF1510 -0.9 -2.4 NADH-quinone oxidoreductase subunit C/D compare
GFF3724 -0.9 -2.3 hypothetical protein compare
GFF2677 -0.9 -2.7 Phosphoadenosine phosphosulfate reductase compare
GFF2373 -0.9 -0.9 hypothetical protein compare
GFF852 -0.9 -1.3 hypothetical protein compare
GFF5113 -0.9 -1.3 Glutamine transport ATP-binding protein GlnQ compare
GFF3572 -0.8 -2.2 UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,4-galactosyltransferase compare
GFF5175 -0.8 -2.4 7-cyano-7-deazaguanine synthase compare
GFF3698 -0.8 -3.3 hypothetical protein compare
GFF2259 -0.8 -1.3 hypothetical protein compare
GFF1530 -0.8 -2.5 DNA translocase FtsK compare
GFF1309 -0.8 -2.5 hypothetical protein compare
GFF2736 -0.8 -1.5 Protein FecR compare
GFF3405 -0.8 -3.0 hypothetical protein compare
GFF4153 -0.8 -3.2 Agmatine deiminase compare
GFF4080 -0.8 -1.9 Sensory histidine kinase/phosphatase NtrB compare
GFF3638 -0.8 -2.0 hypothetical protein compare
GFF1925 -0.8 -1.0 Cyclic pyranopterin monophosphate synthase compare
GFF152 -0.8 -2.2 hypothetical protein compare
GFF1752 -0.8 -2.5 hypothetical protein compare
GFF3902 -0.8 -2.7 hypothetical protein compare
GFF4427 -0.8 -1.9 Transcriptional regulator MraZ compare
GFF1089 -0.7 -1.7 hypothetical protein compare
GFF4684 -0.7 -2.0 putative oxidoreductase YciK compare
GFF729 -0.7 -3.6 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
GFF3876 -0.7 -1.7 Gamma-glutamyl phosphate reductase compare
GFF389 -0.7 -1.6 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF4265 -0.7 -1.6 hypothetical protein compare
GFF4708 -0.7 -1.3 hypothetical protein compare
GFF2694 -0.7 -2.5 FMN-dependent NADH-azoreductase 1 compare
GFF935 -0.7 -2.0 hypothetical protein compare
GFF209 -0.7 -1.5 Pyridoxal phosphate homeostasis protein compare
GFF2471 -0.7 -1.5 Flagellum site-determining protein YlxH compare
GFF3045 -0.7 -1.8 HTH-type transcriptional repressor NanR compare
GFF1339 -0.7 -1.9 Copper resistance protein C compare
GFF3694 -0.7 -3.4 putative protease SohB compare
GFF5139 -0.7 -1.6 6-phosphogluconolactonase compare
GFF1119 -0.7 -1.9 hypothetical protein compare
GFF1373 -0.7 -1.6 hypothetical protein compare
GFF513 -0.7 -1.2 hypothetical protein compare
GFF3720 -0.7 -1.0 hypothetical protein compare
GFF2282 -0.7 -1.0 Sulfur carrier protein TusA compare
GFF887 -0.7 -1.9 hypothetical protein compare
GFF1694 -0.7 -1.5 hypothetical protein compare
GFF4610 -0.7 -1.3 Organic hydroperoxide resistance transcriptional regulator compare
GFF2627 -0.7 -1.4 hypothetical protein compare
GFF4336 -0.7 -1.2 Outer membrane protein assembly factor BamB compare
GFF2980 -0.7 -2.3 Phosphate-import permease protein PhnE compare
GFF2209 -0.7 -0.9 hypothetical protein compare
GFF4206 -0.7 -1.3 Methionine import ATP-binding protein MetN compare
GFF3502 -0.7 -1.8 HTH-type transcriptional regulator NorG compare
GFF2948 -0.6 -1.9 hypothetical protein compare
GFF4031 -0.6 -4.7 Adaptive-response sensory-kinase SasA compare
GFF3452 -0.6 -2.0 hypothetical protein compare
GFF662 -0.6 -1.2 hypothetical protein compare
GFF390 -0.6 -2.9 D-amino acid dehydrogenase 1 compare
GFF481 -0.6 -1.5 putative acyl-CoA thioester hydrolase compare
GFF4399 -0.6 -2.3 Chemotaxis protein CheV compare
GFF841 -0.6 -1.1 hypothetical protein compare
GFF3032 -0.6 -1.8 hypothetical protein compare
GFF4435 -0.6 -1.8 Ammonia monooxygenase gamma subunit compare
GFF3084 -0.6 -2.0 hypothetical protein compare
GFF2967 -0.6 -2.3 hypothetical protein compare
GFF2194 -0.6 -0.9 hypothetical protein compare
GFF2956 -0.6 -1.6 Nitronate monooxygenase compare
GFF1959 -0.6 -1.8 DNA repair protein RecO compare
GFF4239 -0.6 -0.9 hypothetical protein compare
GFF1173 -0.6 -1.3 putative HTH-type transcriptional regulator compare
GFF4091 -0.6 -2.1 Carboxy-terminal processing protease CtpB compare
GFF3658 -0.6 -1.9 D-beta-hydroxybutyrate dehydrogenase compare
GFF256 -0.6 -2.2 Sulfate/thiosulfate import ATP-binding protein CysA compare
GFF1456 -0.6 -2.1 HTH-type transcriptional regulator CysL compare
GFF4766 -0.6 -1.2 Ribonuclease E compare
GFF1835 -0.6 -1.9 Intermembrane phospholipid transport system permease protein MlaE compare
GFF5174 -0.6 -4.0 Quinolinate synthase A compare
GFF1182 -0.6 -2.4 hypothetical protein compare
GFF3470 -0.6 -1.0 hypothetical protein compare
GFF4693 -0.6 -0.8 Fumarate hydratase class II compare
GFF2019 -0.6 -2.2 hypothetical protein compare
GFF4922 -0.6 -1.7 hypothetical protein compare
GFF4376 -0.6 -1.9 hypothetical protein compare
GFF3866 -0.6 -2.3 Holin-like protein CidA compare
GFF1943 -0.6 -1.4 hypothetical protein compare
GFF792 -0.6 -2.1 tRNA pseudouridine synthase A compare
GFF3883 -0.6 -3.4 Endolytic peptidoglycan transglycosylase RlpA compare
GFF1594 -0.6 -1.8 hypothetical protein compare
GFF365 -0.6 -1.5 Iron-sulfur cluster assembly protein CyaY compare
GFF3814 -0.6 -2.9 Outer membrane protein W compare
GFF4364 -0.6 -2.1 hypothetical protein compare
GFF2914 -0.6 -1.3 hypothetical protein compare
GFF3998 -0.6 -2.2 hypothetical protein compare
GFF3687 -0.6 -3.2 Methionine synthase compare
GFF2132 -0.6 -2.4 hypothetical protein compare
GFF1533 -0.6 -1.6 Putative fluoride ion transporter CrcB compare
GFF2350 -0.6 -1.1 HTH-type transcriptional regulator YhaJ compare
GFF2501 -0.6 -1.2 2-hydroxy-3-oxopropionate reductase compare
GFF735 -0.6 -1.0 HTH-type transcriptional regulator CdhR compare
GFF3219 -0.6 -2.4 tRNA dimethylallyltransferase compare
GFF4033 -0.6 -3.1 Glutamyl-Q tRNA(Asp) synthetase compare
GFF1126 -0.6 -1.6 hypothetical protein compare
GFF171 -0.5 -2.5 5,10-methylenetetrahydrofolate reductase compare
GFF3392 -0.5 -1.4 hypothetical protein compare
GFF3120 -0.5 -0.7 hypothetical protein compare
GFF4126 -0.5 -2.1 ATP-dependent zinc metalloprotease FtsH compare
GFF3853 -0.5 -2.6 Protein DedA compare
GFF857 -0.5 -1.8 hypothetical protein compare
GFF3229 -0.5 -2.2 Ribonuclease R compare
GFF4360 -0.5 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
GFF3739 -0.5 -2.0 2-ketogluconate reductase compare
GFF1776 -0.5 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms