Experiment set1S39 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -3.1 -17.2 Pca regulon regulatory protein compare
MPMX19_00260 -2.7 -3.1 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00530 -2.4 -4.8 Orotate phosphoribosyltransferase compare
MPMX19_06967 -2.2 -3.0 hypothetical protein compare
MPMX19_00846 -2.1 -3.4 hypothetical protein compare
MPMX19_00262 -1.9 -2.5 Thiazole synthase compare
MPMX19_00128 -1.9 -12.2 hypothetical protein compare
MPMX19_05719 -1.8 -2.4 hypothetical protein compare
MPMX19_01153 -1.8 -3.7 hypothetical protein compare
MPMX19_02267 -1.8 -1.7 hypothetical protein compare
MPMX19_00129 -1.8 -1.2 hypothetical protein compare
MPMX19_03734 -1.7 -2.2 RutC family protein YjgH compare
MPMX19_02658 -1.6 -10.5 Glutamate synthase [NADPH] small chain compare
MPMX19_02657 -1.6 -13.1 Glutamate synthase [NADPH] large chain compare
MPMX19_05442 -1.6 -3.3 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_01883 -1.6 -7.1 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_01054 -1.5 -5.5 Aspartate carbamoyltransferase compare
MPMX19_00152 -1.5 -1.9 hypothetical protein compare
MPMX19_02268 -1.5 -3.5 hypothetical protein compare
MPMX19_00705 -1.5 -3.3 Cell division coordinator CpoB compare
MPMX19_00478 -1.4 -2.3 putative protein RP812 compare
MPMX19_00714 -1.4 -6.5 Ferrous-iron efflux pump FieF compare
MPMX19_06490 -1.3 -2.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02981 -1.3 -4.7 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01243 -1.3 -2.2 hypothetical protein compare
MPMX19_01545 -1.3 -1.7 Lon protease compare
MPMX19_00841 -1.2 -1.9 Holo-[acyl-carrier-protein] synthase compare
MPMX19_01560 -1.2 -3.0 3'-5' exonuclease DinG compare
MPMX19_06134 -1.2 -3.5 hypothetical protein compare
MPMX19_01053 -1.2 -3.4 Dihydroorotase compare
MPMX19_05982 -1.2 -3.0 hypothetical protein compare
MPMX19_02539 -1.2 -3.4 hypothetical protein compare
MPMX19_04276 -1.2 -1.7 hypothetical protein compare
MPMX19_05438 -1.2 -2.3 hypothetical protein compare
MPMX19_03631 -1.2 -1.6 hypothetical protein compare
MPMX19_03655 -1.2 -1.8 hypothetical protein compare
MPMX19_01630 -1.1 -3.4 Phosphoribosylamine--glycine ligase compare
MPMX19_03298 -1.1 -1.3 hypothetical protein compare
MPMX19_02980 -1.1 -2.1 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_05505 -1.1 -2.6 Leucine-responsive regulatory protein compare
MPMX19_05271 -1.1 -2.1 hypothetical protein compare
MPMX19_04835 -1.1 -2.5 hypothetical protein compare
MPMX19_02937 -1.1 -1.5 hypothetical protein compare
MPMX19_06197 -1.1 -1.5 hypothetical protein compare
MPMX19_03194 -1.1 -1.4 hypothetical protein compare
MPMX19_05726 -1.1 -1.4 hypothetical protein compare
MPMX19_00680 -1.0 -2.1 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_04636 -1.0 -2.4 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05313 -1.0 -2.1 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_04149 -1.0 -2.3 hypothetical protein compare
MPMX19_05727 -1.0 -4.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_00066 -1.0 -1.7 hypothetical protein compare
MPMX19_01610 -1.0 -1.9 ATP-dependent DNA helicase PcrA compare
MPMX19_01304 -1.0 -6.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_06137 -1.0 -2.6 hypothetical protein compare
MPMX19_03859 -1.0 -2.0 hypothetical protein compare
MPMX19_00304 -1.0 -2.3 Phosphatidylcholine synthase compare
MPMX19_05680 -1.0 -2.7 Cell cycle response regulator CtrA compare
MPMX19_05605 -1.0 -2.6 hypothetical protein compare
MPMX19_02118 -0.9 -2.7 hypothetical protein compare
MPMX19_00838 -0.9 -1.9 GTP pyrophosphokinase rsh compare
MPMX19_04779 -0.9 -2.3 hypothetical protein compare
MPMX19_02801 -0.9 -1.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04869 -0.9 -3.4 DNA polymerase I compare
MPMX19_00906 -0.9 -6.4 Amidophosphoribosyltransferase compare
MPMX19_02675 -0.9 -7.1 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_00543 -0.9 -2.3 Molybdenum cofactor guanylyltransferase compare
MPMX19_01014 -0.9 -2.8 Indole-3-glycerol phosphate synthase compare
MPMX19_02177 -0.9 -2.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_02551 -0.9 -2.5 hypothetical protein compare
MPMX19_05748 -0.9 -2.1 Response regulator SaeR compare
MPMX19_02207 -0.9 -2.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_02553 -0.9 -3.9 Protein-export protein SecB compare
MPMX19_03420 -0.9 -2.0 hypothetical protein compare
MPMX19_00695 -0.9 -2.2 putative transcriptional regulatory protein compare
MPMX19_05825 -0.9 -2.1 hypothetical protein compare
MPMX19_04913 -0.9 -1.0 hypothetical protein compare
MPMX19_06090 -0.9 -1.8 Pyruvate dehydrogenase complex repressor compare
MPMX19_03653 -0.9 -4.3 Mannitol 2-dehydrogenase compare
MPMX19_04354 -0.9 -1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00015 -0.9 -2.1 hypothetical protein compare
MPMX19_06885 -0.9 -1.7 Nitrate import ATP-binding protein NrtD compare
MPMX19_02011 -0.9 -2.4 RNA helicase CrhR compare
MPMX19_06253 -0.9 -2.0 hypothetical protein compare
MPMX19_01062 -0.9 -2.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05193 -0.9 -1.6 Taurine-binding periplasmic protein compare
MPMX19_01111 -0.8 -2.0 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_00126 -0.8 -1.8 hypothetical protein compare
MPMX19_06746 -0.8 -1.4 Chemotaxis protein CheW compare
MPMX19_03491 -0.8 -1.8 putative FAD-linked oxidoreductase compare
MPMX19_02973 -0.8 -2.4 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare
MPMX19_00131 -0.8 -2.1 hypothetical protein compare
MPMX19_00482 -0.8 -2.4 Sensor histidine kinase RcsC compare
MPMX19_00608 -0.8 -0.9 hypothetical protein compare
MPMX19_03634 -0.8 -2.2 Arginase compare
MPMX19_05217 -0.8 -1.2 Flagellin compare
MPMX19_01084 -0.8 -3.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_04701 -0.8 -1.4 Transcriptional regulatory protein FixJ compare
MPMX19_02531 -0.8 -1.1 hypothetical protein compare
MPMX19_03768 -0.8 -1.4 hypothetical protein compare
MPMX19_01918 -0.8 -1.1 tRNA-Ala compare
MPMX19_02235 -0.8 -2.5 tRNA-Ala compare
MPMX19_04726 -0.7 -1.8 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_04084 -0.7 -2.1 hypothetical protein compare
MPMX19_04903 -0.7 -2.8 hypothetical protein compare
MPMX19_01748 -0.7 -1.8 hypothetical protein compare
MPMX19_06381 -0.7 -1.2 putative manganese efflux pump MntP compare
MPMX19_01777 -0.7 -1.9 2-aminoadipate transaminase compare
MPMX19_04682 -0.7 -1.0 hypothetical protein compare
MPMX19_04958 -0.7 -1.5 Methyl-accepting chemotaxis protein compare
MPMX19_05109 -0.7 -2.0 hypothetical protein compare
MPMX19_02737 -0.7 -3.6 Tryptophan synthase alpha chain compare
MPMX19_00633 -0.7 -3.8 Intermembrane phospholipid transport system lipoprotein MlaA compare
MPMX19_00139 -0.7 -2.6 hypothetical protein compare
MPMX19_01593 -0.7 -3.8 Cytosol aminopeptidase compare
MPMX19_03803 -0.7 -1.9 hypothetical protein compare
MPMX19_00904 -0.7 -4.2 DNA repair protein RadA compare
MPMX19_05119 -0.7 -5.3 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_06276 -0.7 -2.9 hypothetical protein compare
MPMX19_02579 -0.7 -1.5 hypothetical protein compare
MPMX19_01395 -0.7 -1.6 hypothetical protein compare
MPMX19_02502 -0.7 -2.3 hypothetical protein compare
MPMX19_02543 -0.7 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_05954 -0.7 -2.5 hypothetical protein compare
MPMX19_04118 -0.7 -1.1 Sensor histidine kinase RcsC compare
MPMX19_01076 -0.7 -1.0 Molybdopterin synthase catalytic subunit compare
MPMX19_06102 -0.7 -2.0 Membrane-bound lytic murein transglycosylase C compare
MPMX19_00186 -0.7 -1.5 hypothetical protein compare
MPMX19_06266 -0.7 -1.2 hypothetical protein compare
MPMX19_06141 -0.7 -2.1 Intermembrane phospholipid transport system permease protein MlaE compare
MPMX19_06723 -0.7 -2.3 hypothetical protein compare
MPMX19_03875 -0.7 -3.0 hypothetical protein compare
MPMX19_00266 -0.7 -1.4 hypothetical protein compare
MPMX19_06014 -0.7 -3.6 Histidinol-phosphate aminotransferase compare
MPMX19_03252 -0.6 -2.0 hypothetical protein compare
MPMX19_06271 -0.6 -4.7 hypothetical protein compare
MPMX19_03609 -0.6 -1.3 HTH-type transcriptional repressor NagR compare
MPMX19_04461 -0.6 -2.6 HTH-type transcriptional repressor RspR compare
MPMX19_06034 -0.6 -2.7 Phosphate transport system permease protein PstA compare
MPMX19_04171 -0.6 -1.4 16S ribosomal RNA compare
MPMX19_01508 -0.6 -1.6 hypothetical protein compare
MPMX19_06373 -0.6 -1.4 Lipoprotein signal peptidase compare
MPMX19_00945 -0.6 -2.8 hypothetical protein compare
MPMX19_01201 -0.6 -1.7 hypothetical protein compare
MPMX19_05762 -0.6 -1.4 hypothetical protein compare
MPMX19_05111 -0.6 -1.1 PqqA binding protein compare
MPMX19_04254 -0.6 -2.5 NADP-dependent malic enzyme compare
MPMX19_01149 -0.6 -3.0 Polyphosphate kinase compare
MPMX19_04535 -0.6 -1.3 Maleate isomerase compare
MPMX19_05387 -0.6 -1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_02298 -0.6 -1.6 hypothetical protein compare
MPMX19_01423 -0.6 -1.3 hypothetical protein compare
MPMX19_03978 -0.6 -1.5 hypothetical protein compare
MPMX19_02951 -0.6 -1.0 Deoxyribose-phosphate aldolase 1 compare
MPMX19_01113 -0.6 -1.4 Adaptive-response sensory-kinase SasA compare
MPMX19_06111 -0.6 -1.9 Non-motile and phage-resistance protein compare
MPMX19_06954 -0.6 -1.7 hypothetical protein compare
MPMX19_05686 -0.6 -1.7 Chemotaxis protein CheY compare
MPMX19_01330 -0.6 -1.5 3-mercaptopyruvate sulfurtransferase compare
MPMX19_06508 -0.6 -2.0 Nitrilotriacetate monooxygenase component A compare
MPMX19_02613 -0.6 -1.1 hypothetical protein compare
MPMX19_06417 -0.6 -2.2 Transcriptional regulatory protein OmpR compare
MPMX19_05989 -0.6 -1.7 HTH-type transcriptional regulator HdfR compare
MPMX19_01085 -0.6 -2.6 hypothetical protein compare
MPMX19_00132 -0.6 -2.3 hypothetical protein compare
MPMX19_03735 -0.6 -2.0 Transposon Tn10 TetC protein compare
MPMX19_04501 -0.6 -1.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06985 -0.6 -1.2 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_03575 -0.6 -1.3 HTH-type transcriptional regulator NimR compare
MPMX19_05044 -0.6 -1.0 hypothetical protein compare
MPMX19_04115 -0.6 -1.1 Sensor histidine kinase RcsC compare
MPMX19_03448 -0.6 -1.9 hypothetical protein compare
MPMX19_02303 -0.6 -1.4 hypothetical protein compare
MPMX19_05872 -0.6 -1.5 Redox-sensitive transcriptional activator SoxR compare
MPMX19_06907 -0.6 -1.7 L-talarate/galactarate dehydratase compare
MPMX19_00675 -0.6 -1.6 Peptidoglycan-associated lipoprotein compare
MPMX19_02803 -0.6 -1.7 putative FAD-linked oxidoreductase compare
MPMX19_02241 -0.6 -1.6 hypothetical protein compare
MPMX19_02279 -0.6 -1.5 hypothetical protein compare
MPMX19_05618 -0.6 -1.6 putative manganese efflux pump MntP compare
MPMX19_03069 -0.6 -1.1 hypothetical protein compare
MPMX19_03275 -0.6 -2.4 HTH-type transcriptional regulator PgrR compare
MPMX19_04694 -0.6 -1.2 Na(+)/H(+) antiporter subunit E1 compare
MPMX19_01247 -0.6 -1.4 Transcriptional regulatory protein DegU compare
MPMX19_04391 -0.6 -3.3 Homoserine O-acetyltransferase compare
MPMX19_03870 -0.6 -1.1 L-aspartate dehydrogenase compare
MPMX19_03197 -0.6 -1.2 hypothetical protein compare
MPMX19_04409 -0.6 -1.6 hypothetical protein compare
MPMX19_06567 -0.6 -1.4 hypothetical protein compare
MPMX19_03599 -0.6 -2.2 2-amino-5-chloromuconic acid deaminase compare
MPMX19_01822 -0.5 -2.7 2-isopropylmalate synthase compare
MPMX19_04985 -0.5 -0.9 HTH-type transcriptional regulator DmlR compare
MPMX19_05235 -0.5 -1.7 HTH-type transcriptional regulator BetI compare
MPMX19_03226 -0.5 -1.6 hypothetical protein compare
MPMX19_04615 -0.5 -1.2 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05606 -0.5 -1.3 hypothetical protein compare
MPMX19_00297 -0.5 -1.0 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_03561 -0.5 -1.8 Propane 2-monooxygenase, effector component compare
MPMX19_05834 -0.5 -1.2 Hydrogen peroxide-inducible genes activator compare
MPMX19_01314 -0.5 -2.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms