Experiment set1S39 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_01978 +1.0 2.0 hypothetical protein compare
MPMX19_05254 +1.0 2.0 Carbon monoxide dehydrogenase small chain compare
MPMX19_05534 +1.0 1.8 DNA gyrase inhibitor YacG compare
MPMX19_05656 +0.9 2.8 HTH-type transcriptional activator RhaR compare
MPMX19_01719 +0.9 2.8 Putative fluoride ion transporter CrcB compare
MPMX19_01479 +0.8 4.9 hypothetical protein compare
MPMX19_03800 +0.8 2.1 hypothetical protein compare
MPMX19_05581 +0.8 2.0 hypothetical protein compare
MPMX19_04551 +0.8 2.0 HTH-type transcriptional repressor RspR compare
MPMX19_01811 +0.8 2.1 hypothetical protein compare
MPMX19_00864 +0.8 3.4 Flagellar hook-basal body complex protein FliE compare
MPMX19_05798 +0.8 2.3 HTH-type transcriptional repressor NanR compare
MPMX19_04240 +0.8 2.5 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06914 +0.7 2.2 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_05586 +0.7 1.3 hypothetical protein compare
MPMX19_03476 +0.7 2.8 hypothetical protein compare
MPMX19_05282 +0.7 2.1 1,3,6,8-tetrahydroxynaphthalene synthase compare
MPMX19_01955 +0.7 1.0 Putative anti-sigma factor antagonist compare
MPMX19_05175 +0.7 2.6 hypothetical protein compare
MPMX19_04531 +0.7 2.0 hypothetical protein compare
MPMX19_05127 +0.7 3.4 hypothetical protein compare
MPMX19_01394 +0.7 1.5 hypothetical protein compare
MPMX19_00362 +0.7 2.2 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05575 +0.7 2.0 hypothetical protein compare
MPMX19_03262 +0.7 1.9 putative HTH-type transcriptional repressor ExuR compare
MPMX19_03472 +0.7 2.3 Fatty acid metabolism regulator protein compare
MPMX19_03340 +0.7 2.4 hypothetical protein compare
MPMX19_04863 +0.7 2.0 Transcriptional regulatory protein LnrK compare
MPMX19_02865 +0.7 2.3 hypothetical protein compare
MPMX19_00208 +0.7 1.8 hypothetical protein compare
MPMX19_06874 +0.7 2.0 hypothetical protein compare
MPMX19_05188 +0.7 2.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06420 +0.6 1.8 hypothetical protein compare
MPMX19_00212 +0.6 5.2 Nitrogen fixation regulation protein FixK compare
MPMX19_04727 +0.6 2.8 hypothetical protein compare
MPMX19_00207 +0.6 3.3 hypothetical protein compare
MPMX19_02536 +0.6 2.5 hypothetical protein compare
MPMX19_01012 +0.6 2.2 Cyclic pyranopterin monophosphate synthase compare
MPMX19_06326 +0.6 2.1 hypothetical protein compare
MPMX19_00344 +0.6 1.4 hypothetical protein compare
MPMX19_02811 +0.6 2.0 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_04909 +0.6 2.5 hypothetical protein compare
MPMX19_01480 +0.6 2.9 hypothetical protein compare
MPMX19_00852 +0.6 1.6 hypothetical protein compare
MPMX19_00472 +0.6 1.2 Protein HesB, heterocyst compare
MPMX19_03939 +0.6 2.1 Enoyl-CoA-hydratase compare
MPMX19_03281 +0.6 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06221 +0.6 2.6 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_03212 +0.6 1.9 hypothetical protein compare
MPMX19_03635 +0.6 0.7 DNA-binding transcriptional activator DecR compare
MPMX19_03699 +0.6 1.8 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_02706 +0.6 2.3 hypothetical protein compare
MPMX19_03868 +0.6 1.9 Xylitol-binding protein compare
MPMX19_02876 +0.6 2.4 hypothetical protein compare
MPMX19_02532 +0.5 1.0 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_02815 +0.5 1.1 2-keto-4-pentenoate hydratase compare
MPMX19_05459 +0.5 1.5 hypothetical protein compare
MPMX19_05205 +0.5 1.9 hypothetical protein compare
MPMX19_06569 +0.5 1.5 hypothetical protein compare
MPMX19_00244 +0.5 2.2 hypothetical protein compare
MPMX19_04000 +0.5 2.6 Flagellar motor switch protein FliG compare
MPMX19_06887 +0.5 2.0 Adenine deaminase compare
MPMX19_00211 +0.5 2.1 putative copper-importing P-type ATPase A compare
MPMX19_05624 +0.5 1.0 hypothetical protein compare
MPMX19_06464 +0.5 2.0 Tryptophan synthase beta chain compare
MPMX19_05690 +0.5 3.0 Protein phosphotransferase ChpT compare
MPMX19_05207 +0.5 0.8 Hemolysin secretion protein D, plasmid compare
MPMX19_05082 +0.5 1.9 hypothetical protein compare
MPMX19_05623 +0.5 2.2 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_00010 +0.5 2.0 Transcriptional regulatory protein OmpR compare
MPMX19_06865 +0.5 2.2 Leucine-responsive regulatory protein compare
MPMX19_00044 +0.5 1.6 hypothetical protein compare
MPMX19_06853 +0.5 1.7 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_06179 +0.5 1.2 putative SURF1-like protein compare
MPMX19_03001 +0.5 1.5 Ribulokinase compare
MPMX19_05014 +0.5 1.4 Cytochrome c1 compare
MPMX19_03195 +0.5 1.2 hypothetical protein compare
MPMX19_06762 +0.5 0.6 Peptide deformylase compare
MPMX19_00074 +0.5 1.6 Electron transfer flavoprotein subunit beta compare
MPMX19_02424 +0.5 1.7 hypothetical protein compare
MPMX19_06395 +0.5 1.9 Inner membrane protein YqaA compare
MPMX19_06880 +0.5 1.5 Validamycin A dioxygenase compare
MPMX19_06513 +0.5 3.2 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_06520 +0.5 1.1 Nitrate import ATP-binding protein NrtC compare
MPMX19_02817 +0.5 1.5 Serine 3-dehydrogenase compare
MPMX19_06526 +0.5 2.2 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06610 +0.5 1.2 hypothetical protein compare
MPMX19_01596 +0.5 2.3 hypothetical protein compare
MPMX19_04786 +0.5 3.0 Thymidylate kinase compare
MPMX19_06856 +0.5 2.6 Riboflavin transporter compare
MPMX19_04199 +0.5 3.2 Pseudaminic acid synthase compare
MPMX19_05850 +0.5 1.4 hypothetical protein compare
MPMX19_06886 +0.5 2.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05151 +0.5 2.4 2-aminoethylphosphonate--pyruvate transaminase compare
MPMX19_00577 +0.5 2.3 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_03789 +0.5 2.3 hypothetical protein compare
MPMX19_01248 +0.5 2.2 hypothetical protein compare
MPMX19_05379 +0.5 1.7 hypothetical protein compare
MPMX19_04093 +0.5 1.6 hypothetical protein compare
MPMX19_00423 +0.5 2.0 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_06382 +0.5 2.0 putative MFS-type transporter YfcJ compare
MPMX19_03667 +0.5 2.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03492 +0.5 1.8 3'-5' exonuclease DinG compare
MPMX19_01271 +0.5 1.5 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_00544 +0.5 1.2 hypothetical protein compare
MPMX19_01708 +0.5 1.3 hypothetical protein compare
MPMX19_06763 +0.5 1.7 hypothetical protein compare
MPMX19_00649 +0.5 1.6 Phosphoadenosine phosphosulfate reductase compare
MPMX19_05590 +0.4 1.8 HTH-type transcriptional regulator SyrM 1 compare
MPMX19_01600 +0.4 2.0 hypothetical protein compare
MPMX19_00190 +0.4 1.7 hypothetical protein compare
MPMX19_05376 +0.4 2.3 hypothetical protein compare
MPMX19_02779 +0.4 1.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_03900 +0.4 1.9 Hca operon transcriptional activator HcaR compare
MPMX19_02248 +0.4 1.8 hypothetical protein compare
MPMX19_02415 +0.4 2.0 Transcriptional regulatory protein WalR compare
MPMX19_01858 +0.4 2.8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP compare
MPMX19_04513 +0.4 2.2 Adaptive-response sensory-kinase SasA compare
MPMX19_04088 +0.4 1.9 Signal recognition particle 54 kDa protein compare
MPMX19_06948 +0.4 2.0 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_05186 +0.4 2.4 Thiosulfate sulfurtransferase GlpE compare
MPMX19_01484 +0.4 2.8 Flagellar basal-body rod protein FlgG compare
MPMX19_00515 +0.4 3.1 hypothetical protein compare
MPMX19_04494 +0.4 1.9 p-hydroxybenzoic acid efflux pump subunit AaeA compare
MPMX19_03924 +0.4 0.8 hypothetical protein compare
MPMX19_06539 +0.4 0.8 hypothetical protein compare
MPMX19_03897 +0.4 1.4 hypothetical protein compare
MPMX19_06121 +0.4 2.1 hypothetical protein compare
MPMX19_01401 +0.4 1.2 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_03396 +0.4 1.7 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_03375 +0.4 1.9 Outer membrane protein TolC compare
MPMX19_04914 +0.4 2.2 hypothetical protein compare
MPMX19_04109 +0.4 2.6 hypothetical protein compare
MPMX19_00077 +0.4 2.5 Ribosomal large subunit pseudouridine synthase E compare
MPMX19_02149 +0.4 1.1 hypothetical protein compare
MPMX19_00116 +0.4 2.0 Large-conductance mechanosensitive channel compare
MPMX19_03450 +0.4 1.0 hypothetical protein compare
MPMX19_05622 +0.4 3.2 Sensor histidine kinase RegB compare
MPMX19_03915 +0.4 1.3 hypothetical protein compare
MPMX19_00024 +0.4 1.8 3-dehydro-bile acid delta(4,6)-reductase compare
MPMX19_00689 +0.4 1.1 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_05483 +0.4 1.5 hypothetical protein compare
MPMX19_00046 +0.4 0.9 hypothetical protein compare
MPMX19_05181 +0.4 1.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05542 +0.4 2.3 hypothetical protein compare
MPMX19_03308 +0.4 1.3 hypothetical protein compare
MPMX19_05779 +0.4 1.4 Beta-ketoadipyl-CoA thiolase compare
MPMX19_02116 +0.4 0.9 Cold shock protein CspA compare
MPMX19_00809 +0.4 1.9 Autoinducer 2 sensor kinase/phosphatase LuxQ compare
MPMX19_04225 +0.4 1.9 hypothetical protein compare
MPMX19_01714 +0.4 0.8 tRNA-modifying protein YgfZ compare
MPMX19_04211 +0.4 1.7 hypothetical protein compare
MPMX19_01917 +0.4 1.3 hypothetical protein compare
MPMX19_01609 +0.4 1.2 hypothetical protein compare
MPMX19_02201 +0.4 2.3 hypothetical protein compare
MPMX19_02466 +0.4 1.2 Octopine permease ATP-binding protein P compare
MPMX19_03558 +0.4 1.2 hypothetical protein compare
MPMX19_06340 +0.4 1.5 hypothetical protein compare
MPMX19_05233 +0.4 2.1 Glycine betaine/proline betaine transport system ATP-binding protein ProV compare
MPMX19_05584 +0.4 1.8 hypothetical protein compare
MPMX19_06789 +0.4 0.7 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX19_03752 +0.4 0.7 hypothetical protein compare
MPMX19_06099 +0.4 2.9 hypothetical protein compare
MPMX19_05043 +0.4 1.7 hypothetical protein compare
MPMX19_05155 +0.4 2.3 hypothetical protein compare
MPMX19_00840 +0.4 1.2 Pyridoxine 5'-phosphate synthase compare
MPMX19_02091 +0.4 1.5 hypothetical protein compare
MPMX19_05738 +0.4 2.2 hypothetical protein compare
MPMX19_01481 +0.4 3.1 Flagellar motor switch protein FliM compare
MPMX19_04458 +0.4 1.0 2-hydroxy-3-oxopropionate reductase compare
MPMX19_01462 +0.4 1.6 hypothetical protein compare
MPMX19_01482 +0.4 2.8 hypothetical protein compare
MPMX19_02310 +0.4 1.5 hypothetical protein compare
MPMX19_00821 +0.4 1.2 Protein SlyX compare
MPMX19_03666 +0.4 1.9 hypothetical protein compare
MPMX19_02902 +0.4 1.3 hypothetical protein compare
MPMX19_03784 +0.4 1.1 hypothetical protein compare
MPMX19_01445 +0.4 1.2 hypothetical protein compare
MPMX19_06770 +0.4 1.8 NAD-dependent glycerol dehydrogenase compare
MPMX19_04530 +0.4 2.6 p-hydroxybenzoic acid efflux pump subunit AaeA compare
MPMX19_04198 +0.4 3.0 hypothetical protein compare
MPMX19_00002 +0.4 2.5 Response regulator PleD compare
MPMX19_02348 +0.4 1.2 hypothetical protein compare
MPMX19_05324 +0.4 2.4 hypothetical protein compare
MPMX19_01757 +0.4 1.7 Ferredoxin--NADP reductase compare
MPMX19_05203 +0.4 1.1 hypothetical protein compare
MPMX19_02378 +0.4 1.1 hypothetical protein compare
MPMX19_03126 +0.4 1.3 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
MPMX19_04687 +0.4 0.9 Atrazine chlorohydrolase compare
MPMX19_01629 +0.4 2.2 hypothetical protein compare
MPMX19_04986 +0.4 1.4 hypothetical protein compare
MPMX19_04509 +0.4 1.2 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_00240 +0.4 1.1 hypothetical protein compare
MPMX19_01353 +0.4 1.1 hypothetical protein compare
MPMX19_04791 +0.4 1.1 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_05810 +0.4 1.3 Methylated-DNA--protein-cysteine methyltransferase compare
MPMX19_04616 +0.4 1.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05036 +0.4 2.0 hypothetical protein compare
MPMX19_05178 +0.4 1.7 Alkanesulfonate monooxygenase compare
MPMX19_04569 +0.4 1.2 Anti-sigma-F factor NrsF compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms