Culturing: AMD9036_Kpneumoniae_MKP103_ML4, 48 well microplate, Aerobic, at 37C (C), shaken=double orbital, continuous, 200rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| L-malate degradation II | 1 | 1 | 1 |
| arginine dependent acid resistance | 1 | 1 | 1 |
| glycogen degradation I | 8 | 8 | 4 |
| malate/L-aspartate shuttle pathway | 2 | 2 | 1 |
| trehalose degradation I (low osmolarity) | 2 | 2 | 1 |
| putrescine biosynthesis I | 2 | 2 | 1 |
| L-arginine degradation III (arginine decarboxylase/agmatinase pathway) | 2 | 2 | 1 |
| arsenate detoxification III | 2 | 2 | 1 |
| trehalose degradation II (cytosolic) | 2 | 2 | 1 |
| glycogen degradation II | 6 | 4 | 3 |
| pseudouridine degradation | 2 | 1 | 1 |
| glycerol degradation I | 3 | 3 | 1 |
| L-serine biosynthesis I | 3 | 3 | 1 |
| GDP-α-D-glucose biosynthesis | 3 | 2 | 1 |
| L-carnitine degradation II | 3 | 2 | 1 |
| L-cysteine biosynthesis IX (Trichomonas vaginalis) | 3 | 2 | 1 |
| trehalose degradation V | 3 | 2 | 1 |
| putrescine biosynthesis II | 3 | 1 | 1 |
| trehalose degradation IV | 3 | 1 | 1 |
| L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway) | 3 | 1 | 1 |
| glycerol and glycerophosphodiester degradation | 4 | 4 | 1 |
| superpathway of L-serine and glycine biosynthesis I | 4 | 4 | 1 |
| sucrose degradation III (sucrose invertase) | 4 | 4 | 1 |
| sucrose biosynthesis II | 8 | 6 | 2 |
| starch degradation V | 4 | 3 | 1 |
| superpathway of putrescine biosynthesis | 4 | 3 | 1 |
| chitin deacetylation | 4 | 3 | 1 |
| starch degradation III | 4 | 2 | 1 |
| spermidine biosynthesis III | 4 | 2 | 1 |
| glucose and glucose-1-phosphate degradation | 5 | 5 | 1 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 8 | 2 |
| glyoxylate cycle | 6 | 6 | 1 |
| arsenic detoxification (plants) | 6 | 5 | 1 |
| TCA cycle VIII (Chlamydia) | 6 | 5 | 1 |
| UDP-N-acetyl-D-glucosamine biosynthesis II | 6 | 4 | 1 |
| methylgallate degradation | 6 | 4 | 1 |
| gluconeogenesis I | 13 | 13 | 2 |
| pyridoxal 5'-phosphate biosynthesis I | 7 | 7 | 1 |
| anaerobic energy metabolism (invertebrates, cytosol) | 7 | 5 | 1 |
| incomplete reductive TCA cycle | 7 | 5 | 1 |
| UDP-N-acetyl-D-galactosamine biosynthesis II | 7 | 4 | 1 |
| pyruvate fermentation to propanoate I | 7 | 3 | 1 |
| superpathway of polyamine biosynthesis I | 8 | 7 | 1 |
| protocatechuate degradation I (meta-cleavage pathway) | 8 | 6 | 1 |
| superpathway of polyamine biosynthesis II | 8 | 4 | 1 |
| chitin derivatives degradation | 8 | 4 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 10 | 2 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| L-lysine biosynthesis I | 9 | 9 | 1 |
| 1,3-propanediol biosynthesis (engineered) | 9 | 8 | 1 |
| TCA cycle IV (2-oxoglutarate decarboxylase) | 9 | 7 | 1 |
| TCA cycle V (2-oxoglutarate synthase) | 9 | 7 | 1 |
| TCA cycle II (plants and fungi) | 9 | 7 | 1 |
| chitin biosynthesis | 9 | 6 | 1 |
| TCA cycle I (prokaryotic) | 10 | 9 | 1 |
| TCA cycle III (animals) | 10 | 8 | 1 |
| superpathway of vanillin and vanillate degradation | 10 | 7 | 1 |
| anaerobic energy metabolism (invertebrates, mitochondrial) | 10 | 5 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 11 | 1 |
| glycolysis III (from glucose) | 11 | 11 | 1 |
| reductive TCA cycle I | 11 | 8 | 1 |
| L-glutamate degradation VIII (to propanoate) | 11 | 3 | 1 |
| superpathway of pyridoxal 5'-phosphate biosynthesis and salvage | 12 | 12 | 1 |
| homolactic fermentation | 12 | 12 | 1 |
| superpathway of glyoxylate bypass and TCA | 12 | 11 | 1 |
| gluconeogenesis III | 12 | 9 | 1 |
| reductive TCA cycle II | 12 | 7 | 1 |
| syringate degradation | 12 | 6 | 1 |
| arsenic detoxification (yeast) | 12 | 4 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 13 | 1 |
| (S)-lactate fermentation to propanoate, acetate and hydrogen | 13 | 8 | 1 |
| formaldehyde assimilation I (serine pathway) | 13 | 8 | 1 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 11 | 1 |
| Bifidobacterium shunt | 15 | 13 | 1 |
| mixed acid fermentation | 16 | 16 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 16 | 1 |
| arsenic detoxification (mammals) | 17 | 8 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 18 | 1 |
| heterolactic fermentation | 18 | 16 | 1 |
| methylaspartate cycle | 19 | 9 | 1 |
| superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | 22 | 18 | 1 |
| aspartate superpathway | 25 | 24 | 1 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 25 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 22 | 1 |