Experiment set1S38 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -3.5 -18.3 Pca regulon regulatory protein compare
MPMX19_02980 -2.9 -2.6 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_00128 -2.3 -14.0 hypothetical protein compare
MPMX19_05044 -2.1 -3.1 hypothetical protein compare
MPMX19_02218 -2.0 -3.0 hypothetical protein compare
MPMX19_05358 -1.9 -2.1 hypothetical protein compare
MPMX19_00126 -1.9 -4.1 hypothetical protein compare
MPMX19_02657 -1.9 -15.5 Glutamate synthase [NADPH] large chain compare
MPMX19_00838 -1.9 -3.7 GTP pyrophosphokinase rsh compare
MPMX19_00131 -1.7 -2.3 hypothetical protein compare
MPMX19_02267 -1.7 -1.9 hypothetical protein compare
MPMX19_01729 -1.6 -2.6 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_00142 -1.6 -2.1 hypothetical protein compare
MPMX19_00530 -1.6 -3.7 Orotate phosphoribosyltransferase compare
MPMX19_01630 -1.6 -4.6 Phosphoribosylamine--glycine ligase compare
MPMX19_01545 -1.5 -1.7 Lon protease compare
MPMX19_04276 -1.5 -3.1 hypothetical protein compare
MPMX19_04963 -1.5 -2.0 Cysteine desulfurase IscS compare
MPMX19_04948 -1.5 -2.7 HTH-type transcriptional regulator GltR compare
MPMX19_02815 -1.5 -3.0 2-keto-4-pentenoate hydratase compare
MPMX19_01053 -1.4 -3.4 Dihydroorotase compare
MPMX19_00705 -1.4 -3.4 Cell division coordinator CpoB compare
MPMX19_01714 -1.4 -2.2 tRNA-modifying protein YgfZ compare
MPMX19_02531 -1.4 -2.4 hypothetical protein compare
MPMX19_05355 -1.4 -3.3 Transcriptional regulator SlyA compare
MPMX19_02981 -1.4 -4.5 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_02658 -1.3 -8.9 Glutamate synthase [NADPH] small chain compare
MPMX19_00608 -1.3 -1.3 hypothetical protein compare
MPMX19_01883 -1.3 -4.9 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_00680 -1.3 -2.4 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_01054 -1.2 -4.9 Aspartate carbamoyltransferase compare
MPMX19_00478 -1.2 -2.1 putative protein RP812 compare
MPMX19_00714 -1.2 -5.5 Ferrous-iron efflux pump FieF compare
MPMX19_02207 -1.2 -2.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_01084 -1.2 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_00089 -1.2 -2.6 hypothetical protein compare
MPMX19_03798 -1.2 -3.0 hypothetical protein compare
MPMX19_01059 -1.1 -1.6 hypothetical protein compare
MPMX19_01297 -1.1 -2.0 hypothetical protein compare
MPMX19_01113 -1.1 -2.5 Adaptive-response sensory-kinase SasA compare
MPMX19_05553 -1.1 -2.9 hypothetical protein compare
MPMX19_02511 -1.1 -1.9 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_04208 -1.1 -2.7 flagellum biosynthesis repressor protein FlbT compare
MPMX19_05215 -1.1 -2.9 hypothetical protein compare
MPMX19_00689 -1.1 -2.3 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_02737 -1.1 -5.1 Tryptophan synthase alpha chain compare
MPMX19_00020 -1.0 -1.7 hypothetical protein compare
MPMX19_05442 -1.0 -2.1 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_05818 -1.0 -1.2 hypothetical protein compare
MPMX19_00906 -1.0 -7.5 Amidophosphoribosyltransferase compare
MPMX19_05727 -1.0 -5.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_00475 -1.0 -1.9 hypothetical protein compare
MPMX19_03635 -1.0 -1.2 DNA-binding transcriptional activator DecR compare
MPMX19_05719 -1.0 -1.7 hypothetical protein compare
MPMX19_02268 -1.0 -2.9 hypothetical protein compare
MPMX19_02303 -0.9 -2.1 hypothetical protein compare
MPMX19_01304 -0.9 -6.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_01585 -0.9 -2.4 Zinc uptake regulation protein compare
MPMX19_04280 -0.9 -2.2 hypothetical protein compare
MPMX19_05144 -0.9 -2.0 hypothetical protein compare
MPMX19_06337 -0.9 -2.6 Arsenic resistance transcriptional regulator ArsR1 compare
MPMX19_06134 -0.9 -2.6 hypothetical protein compare
MPMX19_00675 -0.9 -2.0 Peptidoglycan-associated lipoprotein compare
MPMX19_05680 -0.8 -2.8 Cell cycle response regulator CtrA compare
MPMX19_03724 -0.8 -1.1 hypothetical protein compare
MPMX19_01777 -0.8 -2.3 2-aminoadipate transaminase compare
MPMX19_06123 -0.8 -1.7 hypothetical protein compare
MPMX19_03420 -0.8 -2.1 hypothetical protein compare
MPMX19_02675 -0.8 -6.5 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_06916 -0.8 -1.9 Crotonyl-CoA hydratase compare
MPMX19_05119 -0.8 -6.0 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_06723 -0.8 -2.9 hypothetical protein compare
MPMX19_01822 -0.8 -4.0 2-isopropylmalate synthase compare
MPMX19_05070 -0.8 -4.0 hypothetical protein compare
MPMX19_00304 -0.8 -2.2 Phosphatidylcholine synthase compare
MPMX19_04869 -0.8 -3.1 DNA polymerase I compare
MPMX19_00687 -0.8 -1.6 hypothetical protein compare
MPMX19_01085 -0.8 -3.4 hypothetical protein compare
MPMX19_04325 -0.8 -3.5 hypothetical protein compare
MPMX19_04968 -0.8 -1.5 hypothetical protein compare
MPMX19_06211 -0.7 -1.8 tRNA-Ala compare
MPMX19_06567 -0.7 -2.6 hypothetical protein compare
MPMX19_06345 -0.7 -2.8 Pyruvate synthase subunit PorC compare
MPMX19_01884 -0.7 -1.9 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_04835 -0.7 -1.7 hypothetical protein compare
MPMX19_03529 -0.7 -3.1 2,3-diketo-L-gulonate-binding periplasmic protein YiaO compare
MPMX19_05095 -0.7 -2.2 Toxin YoeB compare
MPMX19_01342 -0.7 -1.7 hypothetical protein compare
MPMX19_00849 -0.7 -2.1 hypothetical protein compare
MPMX19_03157 -0.7 -1.4 hypothetical protein compare
MPMX19_05449 -0.7 -1.8 hypothetical protein compare
MPMX19_01014 -0.7 -3.2 Indole-3-glycerol phosphate synthase compare
MPMX19_03427 -0.7 -1.8 hypothetical protein compare
MPMX19_01395 -0.7 -1.4 hypothetical protein compare
MPMX19_06014 -0.7 -3.9 Histidinol-phosphate aminotransferase compare
MPMX19_06821 -0.7 -1.7 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_03859 -0.7 -1.9 hypothetical protein compare
MPMX19_03257 -0.7 -2.2 Glycine betaine/proline betaine transport system ATP-binding protein ProV compare
MPMX19_02235 -0.7 -1.7 tRNA-Ala compare
MPMX19_00887 -0.7 -1.4 hypothetical protein compare
MPMX19_02123 -0.7 -2.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MPMX19_06456 -0.7 -1.3 hypothetical protein compare
MPMX19_06546 -0.7 -1.8 hypothetical protein compare
MPMX19_01998 -0.7 -3.0 3-isopropylmalate dehydratase large subunit compare
MPMX19_00361 -0.7 -2.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02973 -0.7 -1.9 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare
MPMX19_02472 -0.7 -2.6 hypothetical protein compare
MPMX19_03450 -0.7 -1.2 hypothetical protein compare
MPMX19_02905 -0.7 -2.0 hypothetical protein compare
MPMX19_05586 -0.7 -1.0 hypothetical protein compare
MPMX19_06750 -0.6 -2.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_01610 -0.6 -1.6 ATP-dependent DNA helicase PcrA compare
MPMX19_02664 -0.6 -1.0 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_04688 -0.6 -2.5 Bicarbonate transport ATP-binding protein CmpD compare
MPMX19_03788 -0.6 -3.1 hypothetical protein compare
MPMX19_00904 -0.6 -3.9 DNA repair protein RadA compare
MPMX19_03851 -0.6 -2.4 hypothetical protein compare
MPMX19_06373 -0.6 -1.1 Lipoprotein signal peptidase compare
MPMX19_02424 -0.6 -1.9 hypothetical protein compare
MPMX19_01870 -0.6 -2.4 hypothetical protein compare
MPMX19_03194 -0.6 -1.5 hypothetical protein compare
MPMX19_03197 -0.6 -1.1 hypothetical protein compare
MPMX19_05202 -0.6 -2.1 Tryptophan synthase beta chain compare
MPMX19_06449 -0.6 -1.8 hypothetical protein compare
MPMX19_03342 -0.6 -1.6 hypothetical protein compare
MPMX19_02171 -0.6 -2.5 putative ABC transporter ATP-binding protein YejF compare
MPMX19_01448 -0.6 -2.1 hypothetical protein compare
MPMX19_05034 -0.6 -1.8 ATP synthase subunit c compare
MPMX19_01556 -0.6 -3.2 hypothetical protein compare
MPMX19_01565 -0.6 -1.0 hypothetical protein compare
MPMX19_06736 -0.6 -2.5 hypothetical protein compare
MPMX19_05270 -0.6 -2.5 hypothetical protein compare
MPMX19_04254 -0.6 -2.6 NADP-dependent malic enzyme compare
MPMX19_01247 -0.6 -1.6 Transcriptional regulatory protein DegU compare
MPMX19_02700 -0.6 -1.9 hypothetical protein compare
MPMX19_00366 -0.6 -2.1 hypothetical protein compare
MPMX19_03421 -0.6 -1.6 hypothetical protein compare
MPMX19_01015 -0.6 -2.5 Anthranilate phosphoribosyltransferase compare
MPMX19_04680 -0.6 -1.7 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_06118 -0.6 -2.9 Adenine phosphoribosyltransferase compare
MPMX19_06236 -0.6 -1.9 hypothetical protein compare
MPMX19_03128 -0.6 -1.8 hypothetical protein compare
MPMX19_04010 -0.6 -1.4 Isoaspartyl peptidase compare
MPMX19_04391 -0.6 -3.5 Homoserine O-acetyltransferase compare
MPMX19_02116 -0.6 -1.3 Cold shock protein CspA compare
MPMX19_05796 -0.6 -2.4 HTH-type transcriptional repressor BdcR compare
MPMX19_01748 -0.6 -1.0 hypothetical protein compare
MPMX19_00448 -0.6 -3.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_03819 -0.6 -2.1 NADP-reducing hydrogenase subunit HndA compare
MPMX19_04954 -0.6 -1.4 Putative hydro-lyase compare
MPMX19_01249 -0.6 -1.1 Periplasmic serine endoprotease DegP compare
MPMX19_01277 -0.6 -3.2 hypothetical protein compare
MPMX19_03276 -0.6 -1.9 hypothetical protein compare
MPMX19_02132 -0.6 -2.1 hypothetical protein compare
MPMX19_02735 -0.6 -1.2 Sensor histidine kinase RcsC compare
MPMX19_01577 -0.6 -1.7 hypothetical protein compare
MPMX19_03870 -0.6 -0.9 L-aspartate dehydrogenase compare
MPMX19_01586 -0.6 -1.9 hypothetical protein compare
MPMX19_00615 -0.6 -2.0 hypothetical protein compare
MPMX19_06885 -0.6 -1.6 Nitrate import ATP-binding protein NrtD compare
MPMX19_05217 -0.6 -0.8 Flagellin compare
MPMX19_04990 -0.6 -1.9 Hydrogen peroxide-inducible genes activator compare
MPMX19_05652 -0.6 -1.6 hypothetical protein compare
MPMX19_00503 -0.6 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_04940 -0.6 -2.9 Histidine ammonia-lyase compare
MPMX19_00319 -0.6 -0.9 hypothetical protein compare
MPMX19_00235 -0.6 -2.3 hypothetical protein compare
MPMX19_00066 -0.6 -1.0 hypothetical protein compare
MPMX19_00237 -0.6 -1.8 Cysteine synthase compare
MPMX19_00118 -0.6 -2.3 putative parvulin-type peptidyl-prolyl cis-trans isomerase compare
MPMX19_02979 -0.6 -2.4 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_03781 -0.5 -3.3 hypothetical protein compare
MPMX19_05725 -0.5 -1.1 hypothetical protein compare
MPMX19_06788 -0.5 -1.9 putative protein YiaX1 compare
MPMX19_04462 -0.5 -2.1 Thiamine-phosphate synthase compare
MPMX19_00748 -0.5 -2.2 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_00504 -0.5 -2.0 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_06381 -0.5 -1.0 putative manganese efflux pump MntP compare
MPMX19_02553 -0.5 -2.4 Protein-export protein SecB compare
MPMX19_03187 -0.5 -3.4 Magnesium-transporting ATPase, P-type 1 compare
MPMX19_02727 -0.5 -1.9 hypothetical protein compare
MPMX19_02405 -0.5 -1.6 hypothetical protein compare
MPMX19_06815 -0.5 -1.7 hypothetical protein compare
MPMX19_05271 -0.5 -1.0 hypothetical protein compare
MPMX19_06560 -0.5 -2.3 hypothetical protein compare
MPMX19_02674 -0.5 -1.0 NADH:quinone reductase compare
MPMX19_06470 -0.5 -2.0 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_06253 -0.5 -1.0 hypothetical protein compare
MPMX19_05333 -0.5 -0.9 Thymidine phosphorylase compare
MPMX19_02759 -0.5 -2.2 Xanthine phosphoribosyltransferase compare
MPMX19_01314 -0.5 -2.1 hypothetical protein compare
MPMX19_05440 -0.5 -1.8 hypothetical protein compare
MPMX19_00140 -0.5 -2.9 hypothetical protein compare
MPMX19_02392 -0.5 -4.4 Aspartate/prephenate aminotransferase compare
MPMX19_02137 -0.5 -2.4 hypothetical protein compare
MPMX19_05989 -0.5 -1.2 HTH-type transcriptional regulator HdfR compare
MPMX19_05451 -0.5 -2.6 hypothetical protein compare
MPMX19_00576 -0.5 -1.2 hypothetical protein compare
MPMX19_05111 -0.5 -1.4 PqqA binding protein compare
MPMX19_01499 -0.5 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms