Experiment set1S38 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_04551 +1.4 3.9 HTH-type transcriptional repressor RspR compare
MPMX19_06197 +1.4 3.7 hypothetical protein compare
MPMX19_06297 +1.3 2.9 hypothetical protein compare
MPMX19_01493 +1.0 3.2 Flagellar assembly protein FliX compare
MPMX19_05205 +0.9 3.2 hypothetical protein compare
MPMX19_05581 +0.8 2.0 hypothetical protein compare
MPMX19_05834 +0.8 2.8 Hydrogen peroxide-inducible genes activator compare
MPMX19_01480 +0.8 4.3 hypothetical protein compare
MPMX19_01978 +0.8 2.0 hypothetical protein compare
MPMX19_05203 +0.8 2.9 hypothetical protein compare
MPMX19_00852 +0.8 2.3 hypothetical protein compare
MPMX19_04791 +0.8 2.4 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_04863 +0.8 2.2 Transcriptional regulatory protein LnrK compare
MPMX19_01864 +0.7 1.9 Regulatory protein AtoC compare
MPMX19_04579 +0.7 3.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_05656 +0.7 1.6 HTH-type transcriptional activator RhaR compare
MPMX19_06888 +0.7 2.4 hypothetical protein compare
MPMX19_04682 +0.7 1.9 hypothetical protein compare
MPMX19_05068 +0.7 2.7 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_04633 +0.7 2.9 hypothetical protein compare
MPMX19_02660 +0.6 2.7 Inner membrane protein YbjJ compare
MPMX19_04449 +0.6 1.5 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_06610 +0.6 1.4 hypothetical protein compare
MPMX19_00297 +0.6 1.2 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_03868 +0.6 3.0 Xylitol-binding protein compare
MPMX19_00212 +0.6 5.2 Nitrogen fixation regulation protein FixK compare
MPMX19_06193 +0.6 1.5 Flagellar hook-basal body complex protein FliE compare
MPMX19_06883 +0.6 2.4 Choline trimethylamine-lyase activating enzyme compare
MPMX19_00813 +0.6 1.3 HTH-type transcriptional regulator CysL compare
MPMX19_06989 +0.6 2.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02492 +0.6 2.1 hypothetical protein compare
MPMX19_03800 +0.6 2.1 hypothetical protein compare
MPMX19_00362 +0.6 2.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00258 +0.6 1.6 Protein ImuB compare
MPMX19_05813 +0.6 1.9 2-hydroxy-3-oxopropionate reductase compare
MPMX19_04095 +0.6 2.5 hypothetical protein compare
MPMX19_03900 +0.6 2.6 Hca operon transcriptional activator HcaR compare
MPMX19_04083 +0.6 2.4 Cytochrome c-type protein SHP compare
MPMX19_05534 +0.6 1.6 DNA gyrase inhibitor YacG compare
MPMX19_03375 +0.5 2.8 Outer membrane protein TolC compare
MPMX19_05702 +0.5 3.0 Ethanolamine ammonia-lyase light chain compare
MPMX19_02780 +0.5 2.7 hypothetical protein compare
MPMX19_01401 +0.5 1.2 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_04986 +0.5 1.4 hypothetical protein compare
MPMX19_00166 +0.5 1.1 hypothetical protein compare
MPMX19_03642 +0.5 1.3 hypothetical protein compare
MPMX19_02806 +0.5 1.6 HTH-type transcriptional regulator DmlR compare
MPMX19_05016 +0.5 1.2 Sensor histidine kinase RcsC compare
MPMX19_06235 +0.5 2.1 Glycine cleavage system transcriptional activator compare
MPMX19_05575 +0.5 2.1 hypothetical protein compare
MPMX19_03617 +0.5 2.5 hypothetical protein compare
MPMX19_03340 +0.5 1.9 hypothetical protein compare
MPMX19_05747 +0.5 1.1 Transcriptional regulatory protein DegU compare
MPMX19_03050 +0.5 2.2 hypothetical protein compare
MPMX19_06510 +0.5 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_01832 +0.5 2.2 hypothetical protein compare
MPMX19_06917 +0.5 1.4 HTH-type transcriptional regulator PgrR compare
MPMX19_06907 +0.5 2.1 L-talarate/galactarate dehydratase compare
MPMX19_05798 +0.5 1.4 HTH-type transcriptional repressor NanR compare
MPMX19_06492 +0.5 2.4 IS5 family transposase ISAzs10 compare
MPMX19_06843 +0.5 1.7 hypothetical protein compare
MPMX19_01073 +0.5 1.4 5'-nucleotidase compare
MPMX19_05690 +0.5 3.4 Protein phosphotransferase ChpT compare
MPMX19_01789 +0.5 0.9 Urease subunit beta compare
MPMX19_05697 +0.5 2.3 hypothetical protein compare
MPMX19_03476 +0.5 1.4 hypothetical protein compare
MPMX19_06355 +0.5 2.0 hypothetical protein compare
MPMX19_04531 +0.5 1.5 hypothetical protein compare
MPMX19_03281 +0.5 1.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05207 +0.5 0.7 Hemolysin secretion protein D, plasmid compare
MPMX19_01858 +0.5 2.7 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP compare
MPMX19_03320 +0.5 1.8 hypothetical protein compare
MPMX19_03757 +0.5 1.5 D-ribose pyranase compare
MPMX19_02058 +0.5 1.4 hypothetical protein compare
MPMX19_04226 +0.5 1.8 hypothetical protein compare
MPMX19_02865 +0.5 1.5 hypothetical protein compare
MPMX19_04246 +0.5 1.5 hypothetical protein compare
MPMX19_00875 +0.4 1.6 hypothetical protein compare
MPMX19_04341 +0.4 2.0 hypothetical protein compare
MPMX19_05234 +0.4 2.1 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_02094 +0.4 1.9 hypothetical protein compare
MPMX19_00046 +0.4 1.3 hypothetical protein compare
MPMX19_04766 +0.4 2.0 Glycine cleavage system transcriptional activator compare
MPMX19_03297 +0.4 1.5 hypothetical protein compare
MPMX19_01067 +0.4 0.8 hypothetical protein compare
MPMX19_02109 +0.4 2.2 hypothetical protein compare
MPMX19_06395 +0.4 1.2 Inner membrane protein YqaA compare
MPMX19_06478 +0.4 2.2 hypothetical protein compare
MPMX19_04738 +0.4 1.3 hypothetical protein compare
MPMX19_01190 +0.4 1.9 Response regulator receiver protein CpdR compare
MPMX19_00244 +0.4 1.6 hypothetical protein compare
MPMX19_05853 +0.4 1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06099 +0.4 3.0 hypothetical protein compare
MPMX19_03093 +0.4 1.7 Manganese import ATP-binding protein ScaC compare
MPMX19_05152 +0.4 1.4 Phosphonoacetaldehyde hydrolase compare
MPMX19_06272 +0.4 0.8 hypothetical protein compare
MPMX19_04636 +0.4 1.1 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00716 +0.4 2.6 Hydrogenase maturation factor HypD compare
MPMX19_06513 +0.4 2.5 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_01062 +0.4 1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06241 +0.4 1.9 hypothetical protein compare
MPMX19_06221 +0.4 2.2 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_01283 +0.4 1.2 hypothetical protein compare
MPMX19_01622 +0.4 1.9 hypothetical protein compare
MPMX19_06502 +0.4 2.5 60 kDa chaperonin 1 compare
MPMX19_02499 +0.4 1.6 hypothetical protein compare
MPMX19_03727 +0.4 2.0 hypothetical protein compare
MPMX19_02703 +0.4 1.3 hypothetical protein compare
MPMX19_03462 +0.4 1.5 Acetate CoA-transferase subunit alpha compare
MPMX19_03350 +0.4 2.5 GTP 3',8-cyclase compare
MPMX19_06486 +0.4 1.9 Phenylacetate-coenzyme A ligase compare
MPMX19_04520 +0.4 2.0 hypothetical protein compare
MPMX19_02039 +0.4 1.8 hypothetical protein compare
MPMX19_05393 +0.4 1.1 hypothetical protein compare
MPMX19_05638 +0.4 2.3 Aerobic respiration control protein ArcA compare
MPMX19_06539 +0.4 0.8 hypothetical protein compare
MPMX19_03578 +0.4 1.8 HTH-type transcriptional regulator PgrR compare
MPMX19_06263 +0.4 1.0 hypothetical protein compare
MPMX19_06776 +0.4 1.4 hypothetical protein compare
MPMX19_05220 +0.4 1.2 hypothetical protein compare
MPMX19_06334 +0.4 1.7 Arsenite oxidase subunit AioB compare
MPMX19_02172 +0.4 2.0 putative GTPase compare
MPMX19_01244 +0.4 1.6 hypothetical protein compare
MPMX19_04508 +0.4 1.3 Phosphoglycolate phosphatase compare
MPMX19_03069 +0.4 1.1 hypothetical protein compare
MPMX19_04914 +0.4 2.0 hypothetical protein compare
MPMX19_02875 +0.4 1.4 hypothetical protein compare
MPMX19_02095 +0.4 1.3 Ferric uptake regulation protein compare
MPMX19_00206 +0.4 2.8 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_03156 +0.4 1.9 Ribonuclease VapC28 compare
MPMX19_03655 +0.4 0.7 hypothetical protein compare
MPMX19_00344 +0.4 0.8 hypothetical protein compare
MPMX19_04668 +0.4 0.9 HTH-type transcriptional regulator DmlR compare
MPMX19_06315 +0.4 0.8 ISL3 family transposase ISAli18 compare
MPMX19_06476 +0.4 2.4 HTH-type transcriptional regulator ArgP compare
MPMX19_06498 +0.4 1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03567 +0.4 2.1 hypothetical protein compare
MPMX19_03695 +0.4 2.1 hypothetical protein compare
MPMX19_03631 +0.4 0.7 hypothetical protein compare
MPMX19_01790 +0.4 1.5 Urease subunit gamma 1 compare
MPMX19_02677 +0.4 1.7 hypothetical protein compare
MPMX19_04207 +0.4 1.5 hypothetical protein compare
MPMX19_05314 +0.4 1.2 hypothetical protein compare
MPMX19_02524 +0.4 2.8 tRNA pseudouridine synthase B compare
MPMX19_01479 +0.4 1.9 hypothetical protein compare
MPMX19_06765 +0.4 0.6 Hydrogen peroxide-inducible genes activator compare
MPMX19_06180 +0.4 1.1 Sensor histidine kinase RegB compare
MPMX19_03948 +0.4 0.6 tRNA-Ser compare
MPMX19_01423 +0.4 1.3 hypothetical protein compare
MPMX19_06520 +0.4 0.9 Nitrate import ATP-binding protein NrtC compare
MPMX19_06886 +0.4 1.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05961 +0.4 2.3 hypothetical protein compare
MPMX19_03552 +0.4 1.2 hypothetical protein compare
MPMX19_04985 +0.4 0.7 HTH-type transcriptional regulator DmlR compare
MPMX19_05199 +0.4 1.5 Zinc transport protein ZntB compare
MPMX19_06481 +0.4 2.2 Thiosulfate sulfurtransferase GlpE compare
MPMX19_02548 +0.4 1.9 ATP-dependent protease subunit HslV compare
MPMX19_06928 +0.4 0.8 hypothetical protein compare
MPMX19_05030 +0.4 1.7 hypothetical protein compare
MPMX19_05539 +0.4 1.6 Sensor histidine kinase RcsC compare
MPMX19_02251 +0.4 1.0 hypothetical protein compare
MPMX19_04258 +0.4 1.1 hypothetical protein compare
MPMX19_06420 +0.4 1.3 hypothetical protein compare
MPMX19_05520 +0.4 2.0 hypothetical protein compare
MPMX19_06096 +0.4 2.1 hypothetical protein compare
MPMX19_05621 +0.4 1.9 ABC transporter ATP-binding protein NatA compare
MPMX19_03543 +0.3 1.8 putative ABC transporter ATP-binding protein YejF compare
MPMX19_06042 +0.3 2.0 hypothetical protein compare
MPMX19_01875 +0.3 1.5 hypothetical protein compare
MPMX19_03011 +0.3 1.6 hypothetical protein compare
MPMX19_00694 +0.3 0.9 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_05104 +0.3 1.1 hypothetical protein compare
MPMX19_03699 +0.3 0.8 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_04759 +0.3 1.2 HTH-type transcriptional regulator LutR compare
MPMX19_04692 +0.3 1.4 hypothetical protein compare
MPMX19_01095 +0.3 2.2 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_06488 +0.3 0.7 Taurine-binding periplasmic protein compare
MPMX19_00907 +0.3 1.9 putative oxidoreductase YciK compare
MPMX19_04029 +0.3 2.2 Glycine cleavage system transcriptional activator compare
MPMX19_03956 +0.3 2.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06199 +0.3 1.5 GTPase HflX compare
MPMX19_02372 +0.3 1.9 hypothetical protein compare
MPMX19_04466 +0.3 1.0 hypothetical protein compare
MPMX19_04518 +0.3 1.4 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_01005 +0.3 1.3 hypothetical protein compare
MPMX19_03566 +0.3 1.9 Lactoylglutathione lyase compare
MPMX19_04726 +0.3 0.9 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06524 +0.3 1.9 hypothetical protein compare
MPMX19_05435 +0.3 1.8 L-threo-3-hydroxyaspartate ammonia-lyase compare
MPMX19_06770 +0.3 1.7 NAD-dependent glycerol dehydrogenase compare
MPMX19_03831 +0.3 1.6 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_00515 +0.3 2.4 hypothetical protein compare
MPMX19_05623 +0.3 1.3 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_02706 +0.3 1.2 hypothetical protein compare
MPMX19_06805 +0.3 1.7 hypothetical protein compare
MPMX19_03741 +0.3 0.8 hypothetical protein compare
MPMX19_06759 +0.3 0.9 Taurine import ATP-binding protein TauB compare
MPMX19_05511 +0.3 1.4 hypothetical protein compare
MPMX19_01415 +0.3 1.1 hypothetical protein compare
MPMX19_02437 +0.3 2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms