Experiment set1S37 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03635 -3.1 -1.9 DNA-binding transcriptional activator DecR compare
MPMX19_03906 -2.8 -14.8 Pca regulon regulatory protein compare
MPMX19_04079 -2.7 -3.1 hypothetical protein compare
MPMX19_05459 -2.4 -3.0 hypothetical protein compare
MPMX19_00304 -2.4 -2.8 Phosphatidylcholine synthase compare
MPMX19_00262 -2.3 -3.0 Thiazole synthase compare
MPMX19_00530 -2.2 -4.2 Orotate phosphoribosyltransferase compare
MPMX19_02267 -2.1 -1.4 hypothetical protein compare
MPMX19_03096 -2.1 -3.0 hypothetical protein compare
MPMX19_05143 -2.0 -1.9 hypothetical protein compare
MPMX19_00128 -2.0 -11.3 hypothetical protein compare
MPMX19_03072 -1.9 -1.5 hypothetical protein compare
MPMX19_00126 -1.9 -3.3 hypothetical protein compare
MPMX19_02658 -1.9 -12.1 Glutamate synthase [NADPH] small chain compare
MPMX19_05023 -1.9 -2.4 hypothetical protein compare
MPMX19_00020 -1.9 -2.5 hypothetical protein compare
MPMX19_01955 -1.9 -1.8 Putative anti-sigma factor antagonist compare
MPMX19_02657 -1.8 -14.8 Glutamate synthase [NADPH] large chain compare
MPMX19_01053 -1.8 -4.0 Dihydroorotase compare
MPMX19_03787 -1.8 -1.6 hypothetical protein compare
MPMX19_05144 -1.8 -3.0 hypothetical protein compare
MPMX19_03798 -1.8 -3.9 hypothetical protein compare
MPMX19_01560 -1.7 -2.9 3'-5' exonuclease DinG compare
MPMX19_01111 -1.7 -3.2 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_03504 -1.6 -2.7 Sulfur carrier protein FdhD compare
MPMX19_02543 -1.6 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00714 -1.5 -6.2 Ferrous-iron efflux pump FieF compare
MPMX19_00976 -1.5 -2.6 ATP-dependent RNA helicase RhlE compare
MPMX19_04863 -1.5 -2.6 Transcriptional regulatory protein LnrK compare
MPMX19_02981 -1.5 -5.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00148 -1.5 -2.7 hypothetical protein compare
MPMX19_01054 -1.5 -5.3 Aspartate carbamoyltransferase compare
MPMX19_03822 -1.5 -2.7 Sulfur carrier protein FdhD compare
MPMX19_02973 -1.4 -3.6 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare
MPMX19_04958 -1.4 -2.5 Methyl-accepting chemotaxis protein compare
MPMX19_01748 -1.4 -2.8 hypothetical protein compare
MPMX19_00694 -1.4 -2.4 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_01395 -1.4 -2.6 hypothetical protein compare
MPMX19_01883 -1.4 -6.3 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_00152 -1.4 -2.2 hypothetical protein compare
MPMX19_01059 -1.3 -1.4 hypothetical protein compare
MPMX19_01822 -1.3 -5.5 2-isopropylmalate synthase compare
MPMX19_00838 -1.3 -2.9 GTP pyrophosphokinase rsh compare
MPMX19_00705 -1.3 -2.9 Cell division coordinator CpoB compare
MPMX19_05271 -1.2 -2.1 hypothetical protein compare
MPMX19_04835 -1.2 -2.6 hypothetical protein compare
MPMX19_04701 -1.2 -2.3 Transcriptional regulatory protein FixJ compare
MPMX19_05387 -1.2 -2.6 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_02303 -1.2 -2.5 hypothetical protein compare
MPMX19_06044 -1.2 -1.7 hypothetical protein compare
MPMX19_03765 -1.2 -3.4 hypothetical protein compare
MPMX19_03571 -1.2 -2.5 hypothetical protein compare
MPMX19_05438 -1.1 -2.3 hypothetical protein compare
MPMX19_01884 -1.1 -2.7 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_01718 -1.1 -2.3 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_01394 -1.1 -1.4 hypothetical protein compare
MPMX19_01249 -1.1 -1.8 Periplasmic serine endoprotease DegP compare
MPMX19_06969 -1.1 -2.2 hypothetical protein compare
MPMX19_06090 -1.1 -1.4 Pyruvate dehydrogenase complex repressor compare
MPMX19_01545 -1.1 -1.5 Lon protease compare
MPMX19_06321 -1.1 -2.5 hypothetical protein compare
MPMX19_00906 -1.1 -7.4 Amidophosphoribosyltransferase compare
MPMX19_06916 -1.1 -2.2 Crotonyl-CoA hydratase compare
MPMX19_03141 -1.1 -2.3 hypothetical protein compare
MPMX19_02207 -1.1 -2.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_00904 -1.1 -5.8 DNA repair protein RadA compare
MPMX19_00766 -1.0 -2.1 hypothetical protein compare
MPMX19_05016 -1.0 -1.8 Sensor histidine kinase RcsC compare
MPMX19_02951 -1.0 -1.9 Deoxyribose-phosphate aldolase 1 compare
MPMX19_01610 -1.0 -1.7 ATP-dependent DNA helicase PcrA compare
MPMX19_01014 -1.0 -3.3 Indole-3-glycerol phosphate synthase compare
MPMX19_02850 -1.0 -1.7 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_03741 -1.0 -2.2 hypothetical protein compare
MPMX19_01297 -1.0 -1.7 hypothetical protein compare
MPMX19_02544 -1.0 -2.6 hypothetical protein compare
MPMX19_05362 -1.0 -2.0 hypothetical protein compare
MPMX19_03722 -1.0 -1.7 hypothetical protein compare
MPMX19_01304 -1.0 -5.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_03948 -1.0 -1.3 tRNA-Ser compare
MPMX19_06700 -1.0 -1.6 Copper-sensing transcriptional repressor RicR compare
MPMX19_04668 -1.0 -2.2 HTH-type transcriptional regulator DmlR compare
MPMX19_03790 -1.0 -2.1 hypothetical protein compare
MPMX19_03195 -1.0 -1.7 hypothetical protein compare
MPMX19_04013 -1.0 -2.7 hypothetical protein compare
MPMX19_05727 -1.0 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_04869 -1.0 -3.5 DNA polymerase I compare
MPMX19_06535 -0.9 -2.1 hypothetical protein compare
MPMX19_03939 -0.9 -2.2 Enoyl-CoA-hydratase compare
MPMX19_02268 -0.9 -2.7 hypothetical protein compare
MPMX19_01703 -0.9 -1.8 hypothetical protein compare
MPMX19_00260 -0.9 -1.6 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_06253 -0.9 -1.9 hypothetical protein compare
MPMX19_05442 -0.9 -2.0 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_06337 -0.9 -2.6 Arsenic resistance transcriptional regulator ArsR1 compare
MPMX19_05346 -0.9 -3.2 hypothetical protein compare
MPMX19_01113 -0.9 -1.9 Adaptive-response sensory-kinase SasA compare
MPMX19_06102 -0.9 -2.1 Membrane-bound lytic murein transglycosylase C compare
MPMX19_05921 -0.9 -1.1 hypothetical protein compare
MPMX19_00655 -0.9 -3.1 hypothetical protein compare
MPMX19_02300 -0.9 -2.2 Transcription elongation factor GreA compare
MPMX19_06141 -0.9 -2.1 Intermembrane phospholipid transport system permease protein MlaE compare
MPMX19_04638 -0.9 -1.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00319 -0.9 -1.1 hypothetical protein compare
MPMX19_03707 -0.9 -2.0 L-cystine import ATP-binding protein TcyC compare
MPMX19_02553 -0.8 -3.6 Protein-export protein SecB compare
MPMX19_06723 -0.8 -2.8 hypothetical protein compare
MPMX19_02675 -0.8 -6.7 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_05872 -0.8 -2.0 Redox-sensitive transcriptional activator SoxR compare
MPMX19_01714 -0.8 -1.4 tRNA-modifying protein YgfZ compare
MPMX19_04084 -0.8 -2.5 hypothetical protein compare
MPMX19_04949 -0.8 -2.9 Leu/Ile/Val-binding protein compare
MPMX19_05189 -0.8 -2.0 hypothetical protein compare
MPMX19_01998 -0.8 -3.5 3-isopropylmalate dehydratase large subunit compare
MPMX19_03864 -0.8 -3.2 Glycine cleavage system transcriptional activator compare
MPMX19_06230 -0.8 -1.1 hypothetical protein compare
MPMX19_03369 -0.8 -1.8 hypothetical protein compare
MPMX19_05906 -0.8 -1.2 hypothetical protein compare
MPMX19_04010 -0.8 -1.9 Isoaspartyl peptidase compare
MPMX19_04681 -0.8 -1.7 5-hydroxyisourate hydrolase compare
MPMX19_06313 -0.8 -2.8 hypothetical protein compare
MPMX19_01400 -0.8 -1.7 hypothetical protein compare
MPMX19_02559 -0.8 -1.7 7-methyl-GTP pyrophosphatase compare
MPMX19_01149 -0.8 -3.5 Polyphosphate kinase compare
MPMX19_03654 -0.8 -1.4 Fructokinase compare
MPMX19_02105 -0.8 -1.7 hypothetical protein compare
MPMX19_01353 -0.8 -1.6 hypothetical protein compare
MPMX19_05111 -0.8 -1.3 PqqA binding protein compare
MPMX19_05813 -0.8 -1.8 2-hydroxy-3-oxopropionate reductase compare
MPMX19_04208 -0.8 -2.0 flagellum biosynthesis repressor protein FlbT compare
MPMX19_03724 -0.8 -1.4 hypothetical protein compare
MPMX19_03800 -0.7 -1.8 hypothetical protein compare
MPMX19_01247 -0.7 -1.3 Transcriptional regulatory protein DegU compare
MPMX19_01376 -0.7 -1.5 hypothetical protein compare
MPMX19_00764 -0.7 -1.4 ECF RNA polymerase sigma factor EcfG compare
MPMX19_02902 -0.7 -1.8 hypothetical protein compare
MPMX19_01084 -0.7 -2.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_00832 -0.7 -2.6 hypothetical protein compare
MPMX19_02664 -0.7 -1.0 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_01704 -0.7 -1.6 hypothetical protein compare
MPMX19_06195 -0.7 -1.7 hypothetical protein compare
MPMX19_05095 -0.7 -2.0 Toxin YoeB compare
MPMX19_06819 -0.7 -1.6 hypothetical protein compare
MPMX19_03169 -0.7 -0.9 Dihydroanticapsin 7-dehydrogenase compare
MPMX19_06006 -0.7 -2.2 hypothetical protein compare
MPMX19_06193 -0.7 -1.4 Flagellar hook-basal body complex protein FliE compare
MPMX19_03035 -0.7 -2.0 Protein YceI compare
MPMX19_01719 -0.7 -1.3 Putative fluoride ion transporter CrcB compare
MPMX19_05534 -0.7 -1.3 DNA gyrase inhibitor YacG compare
MPMX19_05314 -0.7 -1.7 hypothetical protein compare
MPMX19_05680 -0.7 -2.2 Cell cycle response regulator CtrA compare
MPMX19_06804 -0.7 -1.6 hypothetical protein compare
MPMX19_03959 -0.7 -1.0 hypothetical protein compare
MPMX19_02404 -0.7 -1.7 LexA repressor compare
MPMX19_02660 -0.7 -2.4 Inner membrane protein YbjJ compare
MPMX19_00625 -0.7 -2.4 hypothetical protein compare
MPMX19_00504 -0.7 -2.7 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_04210 -0.7 -1.4 hypothetical protein compare
MPMX19_06112 -0.7 -2.2 hypothetical protein compare
MPMX19_04429 -0.7 -2.5 N-acetylmuramoyl-L-alanine amidase AmiA compare
MPMX19_02058 -0.7 -1.7 hypothetical protein compare
MPMX19_00503 -0.7 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_03499 -0.7 -1.8 Formate dehydrogenase, cytochrome b556(fdo) subunit compare
MPMX19_00236 -0.7 -1.9 HTH-type transcriptional regulator IscR compare
MPMX19_01939 -0.7 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_05019 -0.7 -3.3 Propionyl-CoA carboxylase beta chain compare
MPMX19_05065 -0.7 -1.4 Farnesyl diphosphate synthase compare
MPMX19_02613 -0.7 -1.2 hypothetical protein compare
MPMX19_04042 -0.7 -2.3 hypothetical protein compare
MPMX19_04948 -0.7 -1.3 HTH-type transcriptional regulator GltR compare
MPMX19_01015 -0.7 -2.3 Anthranilate phosphoribosyltransferase compare
MPMX19_00748 -0.7 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_03196 -0.7 -1.2 hypothetical protein compare
MPMX19_04391 -0.7 -3.7 Homoserine O-acetyltransferase compare
MPMX19_06144 -0.7 -1.8 hypothetical protein compare
MPMX19_00131 -0.7 -1.6 hypothetical protein compare
MPMX19_00145 -0.7 -3.1 DNA adenine methyltransferase YhdJ compare
MPMX19_06560 -0.7 -2.6 hypothetical protein compare
MPMX19_06880 -0.7 -1.5 Validamycin A dioxygenase compare
MPMX19_03693 -0.7 -1.5 hypothetical protein compare
MPMX19_01979 -0.6 -2.3 hypothetical protein compare
MPMX19_06014 -0.6 -3.5 Histidinol-phosphate aminotransferase compare
MPMX19_01597 -0.6 -1.1 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_05119 -0.6 -4.8 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_00268 -0.6 -1.3 Transcriptional regulatory protein OmpR compare
MPMX19_05272 -0.6 -1.7 hypothetical protein compare
MPMX19_04477 -0.6 -1.6 hypothetical protein compare
MPMX19_00144 -0.6 -1.7 hypothetical protein compare
MPMX19_02573 -0.6 -1.6 Dihydrofolate reductase compare
MPMX19_00184 -0.6 -2.6 hypothetical protein compare
MPMX19_04554 -0.6 -2.1 Response regulator PleD compare
MPMX19_00149 -0.6 -2.9 hypothetical protein compare
MPMX19_03023 -0.6 -2.0 Maltose O-acetyltransferase compare
MPMX19_04240 -0.6 -1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02512 -0.6 -3.0 PhoH-like protein compare
MPMX19_04284 -0.6 -1.4 hypothetical protein compare
MPMX19_01777 -0.6 -1.7 2-aminoadipate transaminase compare
MPMX19_02601 -0.6 -3.4 hypothetical protein compare
MPMX19_00159 -0.6 -2.3 hypothetical protein compare
MPMX19_05152 -0.6 -1.3 Phosphonoacetaldehyde hydrolase compare
MPMX19_05656 -0.6 -1.0 HTH-type transcriptional activator RhaR compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms