Experiment set1S37 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_03123 +1.2 3.3 Citrate lyase acyl carrier protein compare
MPMX19_06381 +1.0 2.1 putative manganese efflux pump MntP compare
MPMX19_04551 +1.0 2.5 HTH-type transcriptional repressor RspR compare
MPMX19_06795 +0.9 3.2 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase compare
MPMX19_05586 +0.8 1.8 hypothetical protein compare
MPMX19_01479 +0.8 5.2 hypothetical protein compare
MPMX19_02116 +0.8 2.1 Cold shock protein CspA compare
MPMX19_04449 +0.8 1.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_02835 +0.8 2.9 Phosphoribosyl-dephospho-CoA transferase compare
MPMX19_02531 +0.8 2.1 hypothetical protein compare
MPMX19_01050 +0.8 2.3 hypothetical protein compare
MPMX19_03439 +0.7 2.0 hypothetical protein compare
MPMX19_05068 +0.7 2.7 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_01811 +0.7 2.0 hypothetical protein compare
MPMX19_06327 +0.7 1.8 hypothetical protein compare
MPMX19_05104 +0.7 1.5 hypothetical protein compare
MPMX19_06765 +0.7 2.0 Hydrogen peroxide-inducible genes activator compare
MPMX19_03450 +0.7 1.0 hypothetical protein compare
MPMX19_06610 +0.7 1.5 hypothetical protein compare
MPMX19_06510 +0.7 1.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06520 +0.7 1.7 Nitrate import ATP-binding protein NrtC compare
MPMX19_01454 +0.6 1.7 hypothetical protein compare
MPMX19_00689 +0.6 2.1 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_03916 +0.6 1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_06263 +0.6 1.2 hypothetical protein compare
MPMX19_05014 +0.6 1.7 Cytochrome c1 compare
MPMX19_04680 +0.6 2.2 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_04058 +0.6 1.9 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_02251 +0.6 1.7 hypothetical protein compare
MPMX19_00244 +0.6 2.6 hypothetical protein compare
MPMX19_00852 +0.6 1.2 hypothetical protein compare
MPMX19_06808 +0.6 1.7 HTH-type transcriptional regulator DmlR compare
MPMX19_03308 +0.6 2.5 hypothetical protein compare
MPMX19_06917 +0.6 2.3 HTH-type transcriptional regulator PgrR compare
MPMX19_00258 +0.6 2.0 Protein ImuB compare
MPMX19_03460 +0.6 3.4 Signal transduction histidine-protein kinase AtoS compare
MPMX19_02745 +0.6 1.8 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
MPMX19_06989 +0.6 1.8 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06661 +0.6 3.1 hypothetical protein compare
MPMX19_02094 +0.6 1.9 hypothetical protein compare
MPMX19_06569 +0.6 1.7 hypothetical protein compare
MPMX19_00212 +0.6 4.7 Nitrogen fixation regulation protein FixK compare
MPMX19_03527 +0.6 2.5 hypothetical protein compare
MPMX19_05850 +0.5 1.5 hypothetical protein compare
MPMX19_05203 +0.5 1.7 hypothetical protein compare
MPMX19_06353 +0.5 0.9 hypothetical protein compare
MPMX19_00142 +0.5 0.7 hypothetical protein compare
MPMX19_01480 +0.5 2.1 hypothetical protein compare
MPMX19_02120 +0.5 1.4 hypothetical protein compare
MPMX19_01708 +0.5 1.7 hypothetical protein compare
MPMX19_06255 +0.5 1.9 hypothetical protein compare
MPMX19_06853 +0.5 1.8 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_06471 +0.5 2.4 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_06856 +0.5 2.9 Riboflavin transporter compare
MPMX19_05193 +0.5 0.9 Taurine-binding periplasmic protein compare
MPMX19_04990 +0.5 1.6 Hydrogen peroxide-inducible genes activator compare
MPMX19_02063 +0.5 2.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02057 +0.5 1.6 hypothetical protein compare
MPMX19_06773 +0.5 1.9 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_00094 +0.5 1.3 hypothetical protein compare
MPMX19_02876 +0.5 2.4 hypothetical protein compare
MPMX19_05725 +0.5 1.3 hypothetical protein compare
MPMX19_06179 +0.5 1.0 putative SURF1-like protein compare
MPMX19_01283 +0.5 1.7 hypothetical protein compare
MPMX19_01605 +0.5 3.4 Chemotaxis protein CheY compare
MPMX19_04693 +0.5 2.6 hypothetical protein compare
MPMX19_05621 +0.5 2.8 ABC transporter ATP-binding protein NatA compare
MPMX19_01978 +0.5 1.2 hypothetical protein compare
MPMX19_06187 +0.5 2.8 hypothetical protein compare
MPMX19_06488 +0.5 1.3 Taurine-binding periplasmic protein compare
MPMX19_03731 +0.5 1.9 hypothetical protein compare
MPMX19_04687 +0.5 1.6 Atrazine chlorohydrolase compare
MPMX19_03011 +0.5 1.6 hypothetical protein compare
MPMX19_01101 +0.5 1.5 hypothetical protein compare
MPMX19_00294 +0.5 1.8 Adaptive-response sensory-kinase SasA compare
MPMX19_02424 +0.5 1.6 hypothetical protein compare
MPMX19_01487 +0.5 1.6 hypothetical protein compare
MPMX19_03598 +0.5 2.3 hypothetical protein compare
MPMX19_02366 +0.5 2.9 hypothetical protein compare
MPMX19_06345 +0.5 2.2 Pyruvate synthase subunit PorC compare
MPMX19_01627 +0.5 2.3 hypothetical protein compare
MPMX19_05313 +0.5 1.3 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_02937 +0.5 0.9 hypothetical protein compare
MPMX19_04205 +0.5 1.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06877 +0.5 2.0 hypothetical protein compare
MPMX19_02735 +0.5 0.7 Sensor histidine kinase RcsC compare
MPMX19_06042 +0.5 2.1 hypothetical protein compare
MPMX19_00414 +0.5 1.3 Pyruvate dehydrogenase complex repressor compare
MPMX19_05176 +0.5 0.6 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_00208 +0.5 0.7 hypothetical protein compare
MPMX19_06843 +0.5 1.6 hypothetical protein compare
MPMX19_00572 +0.4 1.6 Type-4 uracil-DNA glycosylase compare
MPMX19_02279 +0.4 1.2 hypothetical protein compare
MPMX19_03363 +0.4 2.6 hypothetical protein compare
MPMX19_01749 +0.4 1.9 hypothetical protein compare
MPMX19_03710 +0.4 1.4 Glycine cleavage system transcriptional activator compare
MPMX19_03613 +0.4 1.3 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_05618 +0.4 1.4 putative manganese efflux pump MntP compare
MPMX19_06886 +0.4 2.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06518 +0.4 1.7 Methionine import system permease protein MetP compare
MPMX19_05022 +0.4 2.5 hypothetical protein compare
MPMX19_05551 +0.4 1.1 Chemotaxis protein CheY compare
MPMX19_00978 +0.4 1.3 hypothetical protein compare
MPMX19_04913 +0.4 1.1 hypothetical protein compare
MPMX19_06492 +0.4 1.7 IS5 family transposase ISAzs10 compare
MPMX19_04100 +0.4 1.3 hypothetical protein compare
MPMX19_05824 +0.4 1.7 hypothetical protein compare
MPMX19_04579 +0.4 1.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_06890 +0.4 1.9 hypothetical protein compare
MPMX19_05578 +0.4 2.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02532 +0.4 1.2 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_00822 +0.4 2.5 Divalent metal cation transporter MntH compare
MPMX19_02788 +0.4 1.7 Gluconate 5-dehydrogenase compare
MPMX19_05300 +0.4 1.5 Signal transduction histidine-protein kinase AtoS compare
MPMX19_04647 +0.4 1.1 hypothetical protein compare
MPMX19_00600 +0.4 1.9 hypothetical protein compare
MPMX19_06897 +0.4 1.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00024 +0.4 1.4 3-dehydro-bile acid delta(4,6)-reductase compare
MPMX19_02970 +0.4 1.9 Sialic acid-binding periplasmic protein SiaP compare
MPMX19_06509 +0.4 1.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03578 +0.4 1.4 HTH-type transcriptional regulator PgrR compare
MPMX19_04735 +0.4 1.6 hypothetical protein compare
MPMX19_02931 +0.4 2.0 Linearmycin resistance ATP-binding protein LnrL compare
MPMX19_04692 +0.4 1.3 hypothetical protein compare
MPMX19_04726 +0.4 1.3 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_02618 +0.4 1.0 Transcriptional regulatory protein BaeR compare
MPMX19_03900 +0.4 1.6 Hca operon transcriptional activator HcaR compare
MPMX19_02149 +0.4 1.5 hypothetical protein compare
MPMX19_03735 +0.4 1.2 Transposon Tn10 TetC protein compare
MPMX19_02795 +0.4 2.2 Homoaconitase large subunit compare
MPMX19_05002 +0.4 2.7 HTH-type transcriptional regulator DmlR compare
MPMX19_01141 +0.4 1.7 hypothetical protein compare
MPMX19_03631 +0.4 0.9 hypothetical protein compare
MPMX19_06737 +0.4 1.4 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_01274 +0.4 2.1 hypothetical protein compare
MPMX19_01617 +0.4 0.8 hypothetical protein compare
MPMX19_01954 +0.4 2.0 hypothetical protein compare
MPMX19_06655 +0.4 3.2 hypothetical protein compare
MPMX19_04053 +0.4 1.3 Transcriptional regulatory protein OmpR compare
MPMX19_00100 +0.4 1.6 hypothetical protein compare
MPMX19_01945 +0.4 1.7 RNA pyrophosphohydrolase compare
MPMX19_06901 +0.4 2.1 Alpha-ketoglutaric semialdehyde dehydrogenase compare
MPMX19_05655 +0.4 2.6 hypothetical protein compare
MPMX19_06326 +0.4 1.5 hypothetical protein compare
MPMX19_05084 +0.4 2.0 hypothetical protein compare
MPMX19_03073 +0.4 1.4 hypothetical protein compare
MPMX19_02084 +0.4 0.6 hypothetical protein compare
MPMX19_03907 +0.4 1.7 Short-chain-enoyl-CoA hydratase compare
MPMX19_06656 +0.4 3.1 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_06646 +0.4 1.9 hypothetical protein compare
MPMX19_04644 +0.4 0.7 hypothetical protein compare
MPMX19_02318 +0.4 1.5 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_04648 +0.4 1.4 hypothetical protein compare
MPMX19_02041 +0.4 1.0 Protein YciI compare
MPMX19_03874 +0.4 1.5 hypothetical protein compare
MPMX19_03403 +0.4 2.3 Glutathione transport system permease protein GsiC compare
MPMX19_05231 +0.4 1.7 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_00031 +0.4 1.0 hypothetical protein compare
MPMX19_04226 +0.4 1.7 hypothetical protein compare
MPMX19_06123 +0.4 1.0 hypothetical protein compare
MPMX19_05930 +0.4 1.2 Dipeptidyl-peptidase 6 compare
MPMX19_03747 +0.4 1.8 Potassium-transporting ATPase KdpC subunit compare
MPMX19_05168 +0.4 2.0 Hemin transport system permease protein HmuU compare
MPMX19_03646 +0.4 1.9 Histidinol-phosphate aminotransferase compare
MPMX19_02076 +0.4 2.4 Carnitine operon protein CaiE compare
MPMX19_00320 +0.4 1.4 hypothetical protein compare
MPMX19_05235 +0.4 1.3 HTH-type transcriptional regulator BetI compare
MPMX19_05031 +0.4 2.1 ATP synthase gamma chain compare
MPMX19_00773 +0.4 1.6 hypothetical protein compare
MPMX19_06753 +0.4 2.4 Guanidinopropionase compare
MPMX19_01213 +0.4 2.6 hypothetical protein compare
MPMX19_05918 +0.4 1.6 Flagellar biosynthetic protein FliP compare
MPMX19_05185 +0.4 2.3 hypothetical protein compare
MPMX19_03676 +0.4 1.5 hypothetical protein compare
MPMX19_01159 +0.4 3.1 Presqualene diphosphate synthase compare
MPMX19_03262 +0.4 0.9 putative HTH-type transcriptional repressor ExuR compare
MPMX19_02374 +0.4 1.9 hypothetical protein compare
MPMX19_02153 +0.4 1.8 hypothetical protein compare
MPMX19_02310 +0.4 0.9 hypothetical protein compare
MPMX19_05082 +0.4 0.9 hypothetical protein compare
MPMX19_03265 +0.4 2.2 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_03862 +0.4 1.5 hypothetical protein compare
MPMX19_05199 +0.4 1.3 Zinc transport protein ZntB compare
MPMX19_06768 +0.4 1.0 hypothetical protein compare
MPMX19_01940 +0.4 1.7 Ribosomal RNA large subunit methyltransferase H compare
MPMX19_01125 +0.4 0.5 hypothetical protein compare
MPMX19_05924 +0.4 2.0 hypothetical protein compare
MPMX19_06883 +0.4 1.4 Choline trimethylamine-lyase activating enzyme compare
MPMX19_01508 +0.4 1.5 hypothetical protein compare
MPMX19_05047 +0.4 1.7 Glycine cleavage system transcriptional activator compare
MPMX19_06476 +0.4 1.9 HTH-type transcriptional regulator ArgP compare
MPMX19_03859 +0.4 0.9 hypothetical protein compare
MPMX19_06904 +0.4 1.4 putative tautomerase compare
MPMX19_02784 +0.4 2.1 phosphoglycerate mutase GpmB compare
MPMX19_06763 +0.4 1.0 hypothetical protein compare
MPMX19_02862 +0.4 1.6 hypothetical protein compare
MPMX19_02677 +0.4 1.9 hypothetical protein compare
MPMX19_04724 +0.4 0.9 hypothetical protein compare
MPMX19_04825 +0.4 1.0 hypothetical protein compare
MPMX19_05191 +0.4 1.8 Phenylacetate-coenzyme A ligase compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms