Experiment set1S369 for Bacteroides ovatus ATCC 8483
Amylopectin from Potato 2.5 mg/mL carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Amylopectin from Potato (2.5 mg/mL)
Culturing: Bovatus_ATCC8483_ML6, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/30/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 14 genes in this experiment
For carbon source Amylopectin from Potato in Bacteroides ovatus ATCC 8483
For carbon source Amylopectin from Potato across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glycogen metabolism | 1 |
| Maltose and Maltodextrin Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Starch and sucrose metabolism
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycogen degradation I | 8 | 7 | 3 |
| glycogen degradation II | 6 | 5 | 2 |
| glycogen biosynthesis I (from ADP-D-Glucose) | 4 | 3 | 1 |
| starch degradation V | 4 | 3 | 1 |
| starch degradation III | 4 | 2 | 1 |
| glycogen biosynthesis II (from UDP-D-Glucose) | 4 | 1 | 1 |
| starch biosynthesis | 10 | 5 | 2 |
| sucrose biosynthesis II | 8 | 5 | 1 |
| glycogen biosynthesis III (from α-maltose 1-phosphate) | 8 | 3 | 1 |