Experiment set1S367 for Escherichia coli ECRC102

Compare to:

Bas61

200 most important genes:

  gene name fitness t score description  
NIAGMN_06550 secD -4.6 -2.4 Protein translocase subunit SecD compare
NIAGMN_00915 fadK -3.8 -3.6 medium-chain fatty-acid--CoA ligase compare
NIAGMN_19195 pdxJ -3.3 -2.3 pyridoxine 5'-phosphate synthase compare
NIAGMN_04855 tolB -3.3 -3.2 Tol-Pal system protein TolB compare
NIAGMN_04850 pal -3.1 -2.1 peptidoglycan-associated lipoprotein Pal compare
NIAGMN_07210 -3.0 -2.0 hypothetical protein compare
NIAGMN_12600 glmU -2.9 -10.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU compare
NIAGMN_04870 tolQ -2.7 -1.8 Tol-Pal system protein TolQ compare
NIAGMN_07895 gmhB -2.5 -1.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NIAGMN_01415 yeaQ -2.4 -1.2 UPF0410 protein YeaQ compare
NIAGMN_12650 pstB -2.4 -2.2 phosphate ABC transporter ATP-binding protein PstB compare
NIAGMN_24435 ydaS -2.3 -1.5 transcriptional regulator compare
NIAGMN_21785 -2.2 -1.7 phage tail tape measure protein compare
NIAGMN_00480 malI -2.2 -2.1 mal regulon transcriptional regulator MalI compare
NIAGMN_15105 tufA_E379K -2.1 -2.0 translation elongation factor EF-Tu 1 compare
NIAGMN_05660 fepE -2.1 -1.0 LPS O-antigen length regulator compare
NIAGMN_22120 baeR -2.1 -1.9 two-component system response regulator BaeR compare
NIAGMN_23735 -2.0 -1.2 hypothetical protein compare
NIAGMN_11440 metJ -2.0 -2.0 met regulon transcriptional regulator MetJ compare
NIAGMN_01200 ynjD -1.9 -1.8 Uncharacterized ABC transporter ATP-binding protein YnjD compare
NIAGMN_02390 fliP -1.9 -1.2 flagellar type III secretion system pore protein FliP compare
NIAGMN_20605 -1.9 -1.3 hypothetical protein compare
NIAGMN_02090 -1.9 -3.9 hypothetical protein compare
NIAGMN_07400 -1.9 -3.5 Ogr/Delta-like zinc finger compare
NIAGMN_06290 ybaA -1.9 -1.3 Uncharacterized protein YbaA compare
NIAGMN_11925 dsbA -1.9 -1.2 thiol:disulfide interchange protein DsbA compare
NIAGMN_11845 typA -1.9 -11.8 ribosome-dependent GTPase TypA compare
NIAGMN_05015 -1.8 -1.1 Fimbrial protein compare
NIAGMN_00460 uidA -1.8 -2.6 beta-glucuronidase compare
NIAGMN_28895 sopA -1.7 -2.0 plasmid-partitioning protein SopA compare
NIAGMN_09490 -1.7 -1.2 Transposase compare
NIAGMN_23805 eAL -1.7 -1.2 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
NIAGMN_24505 -1.7 -1.6 protein hokC compare
NIAGMN_03185 ihfB -1.7 -1.9 integration host factor subunit beta compare
NIAGMN_00510 rsxA -1.7 -2.4 electron transport complex subunit RsxA compare
NIAGMN_20610 nuoA -1.7 -2.6 NADH-quinone oxidoreductase subunit NuoA compare
NIAGMN_04965 sucC -1.6 -2.2 ADP-forming succinate--CoA ligase subunit beta compare
NIAGMN_02095 marR -1.6 -1.8 MarR family transcriptional regulator compare
NIAGMN_13455 rfaF -1.6 -1.5 ADP-heptose--LPS heptosyltransferase RfaF compare
NIAGMN_20570 yfbV -1.6 -1.5 UPF0208 membrane protein YfbV compare
NIAGMN_13130 escO -1.6 -2.1 positive regulator EscO compare
NIAGMN_05855 fimA -1.6 -1.6 type 1 fimbrial major subunit FimA compare
NIAGMN_28450 nleG7 -1.6 -2.5 Type III secretion system effector NleG7, E3 Ubiquitin Ligase compare
NIAGMN_18555 emrR -1.5 -4.9 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
NIAGMN_26690 rnb -1.5 -2.2 exoribonuclease II compare
NIAGMN_27920 nhaP2 -1.5 -2.0 potassium/proton antiporter compare
NIAGMN_08195 dksA -1.5 -5.7 RNA polymerase-binding protein DksA compare
NIAGMN_24115 mdtH -1.5 -1.7 multidrug efflux MFS transporter MdtH compare
NIAGMN_06385 clpX -1.5 -1.7 ATP-dependent protease ATP-binding subunit ClpX compare
NIAGMN_00735 ydhS -1.5 -1.9 FAD-NAD(P)-binding protein compare
NIAGMN_15770 sfsB -1.4 -2.1 DNA-binding transcriptional regulator SfsB compare
NIAGMN_04860 tolA -1.4 -0.9 cell envelope integrity protein TolA compare
NIAGMN_00590 slyA -1.4 -1.2 transcriptional regulator SlyA compare
NIAGMN_02925 mgsA -1.4 -1.6 methylglyoxal synthase compare
NIAGMN_20655 nuoK -1.4 -2.5 NADH-quinone oxidoreductase subunit NuoK compare
NIAGMN_18025 mazE -1.4 -1.6 type II toxin-antitoxin system antitoxin MazE compare
NIAGMN_03140 cmoM -1.4 -2.4 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
NIAGMN_08895 dnaJ -1.3 -1.5 molecular chaperone DnaJ compare
NIAGMN_01375 yeaK -1.3 -1.7 mischarged aminoacyl-tRNA deacylase compare
NIAGMN_13435 rfaJ -1.3 -3.6 glucosyltransferase compare
NIAGMN_03400 -1.3 -1.9 hypothetical protein compare
NIAGMN_26790 yciK -1.3 -1.1 YciK family oxidoreductase compare
NIAGMN_01885 flhe -1.3 -1.9 flagellar protein FlhE compare
NIAGMN_03055 elfA -1.3 -1.4 Fimbrial subunit ElfA compare
NIAGMN_01250 sppA -1.3 -2.0 signal peptide peptidase SppA compare
NIAGMN_01825 yecE -1.3 -2.3 UPF0759 protein YecE compare
NIAGMN_02955 ompA -1.3 -6.5 outer membrane protein A compare
NIAGMN_06445 yajQ -1.3 -1.7 nucleotide binding protein YajQ compare
NIAGMN_17090 tkt -1.3 -2.2 transketolase compare
NIAGMN_25160 ydfG -1.3 -0.9 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
NIAGMN_22090 glpR -1.3 -1.4 transcriptional regulator compare
NIAGMN_00495 blr -1.3 -2.5 division septum protein Blr compare
NIAGMN_23240 -1.3 -1.7 hypothetical protein compare
NIAGMN_18565 ygaZ -1.3 -4.1 L-valine exporter subunit YgaZ compare
NIAGMN_17595 sctI -1.3 -1.4 type III secretion system inner rod subunit SctI compare
NIAGMN_23405 kilAC -1.3 -2.3 DNA-binding protein compare
NIAGMN_21520 exoD -1.3 -4.0 Putative uncharacterized protein ExoD compare
NIAGMN_24230 yceD -1.3 -3.5 23S rRNA accumulation protein YceD compare
NIAGMN_23600 -1.2 -2.6 hypothetical protein compare
NIAGMN_28290 -1.2 -1.0 antiterminator compare
NIAGMN_24740 espK -1.2 -2.0 type III secretion system effector EspK compare
NIAGMN_00655 mepH -1.2 -1.2 peptidoglycan DD-endopeptidase MepH compare
NIAGMN_14205 pitA -1.2 -1.4 inorganic phosphate transporter PitA compare
NIAGMN_28815 yubL -1.2 -2.4 UPF0401 protein YubL compare
NIAGMN_19420 iscX -1.2 -1.0 Fe-S cluster assembly protein IscX compare
NIAGMN_26525 ycjQ -1.2 -1.5 D-guloside 3-dehydrogenase compare
NIAGMN_23585 -1.2 -1.7 hypothetical protein compare
NIAGMN_23635 ydeI -1.2 -1.0 TIGR00156 family protein compare
NIAGMN_03430 -1.2 -2.0 hypothetical protein compare
NIAGMN_12165 uvrD -1.2 -5.5 DNA helicase II compare
NIAGMN_15835 secG -1.2 -1.8 preprotein translocase subunit SecG compare
NIAGMN_19130 srmB -1.2 -3.4 ATP-dependent RNA helicase SrmB compare
NIAGMN_11585 pfkA -1.2 -1.3 6-phosphofructokinase compare
NIAGMN_04385 ybhM -1.1 -1.4 Uncharacterized protein YbhM compare
NIAGMN_11210 tuf -1.1 -1.5 elongation factor Tu compare
NIAGMN_02045 -1.1 -1.2 DUF2511 domain-containing protein compare
NIAGMN_15690 ptsN -1.1 -1.4 PTS IIA-like nitrogen regulatory protein PtsN compare
NIAGMN_06390 clpP -1.1 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NIAGMN_27680 narI -1.1 -0.9 respiratory nitrate reductase subunit gamma compare
NIAGMN_11310 sthA -1.1 -4.1 Si-specific NAD(P)(+) transhydrogenase compare
NIAGMN_10670 ytcB -1.1 -0.8 Protein YtcB compare
NIAGMN_15440 fis -1.1 -2.7 DNA-binding transcriptional regulator Fis compare
NIAGMN_16275 exuR -1.1 -5.0 transcriptional regulator ExuR compare
NIAGMN_24970 -1.1 -1.4 Antitermination protein Q compare
NIAGMN_20445 truA -1.1 -2.5 aspartate-semialdehyde dehydrogenase compare
NIAGMN_19170 lepA -1.1 -1.8 translation elongation factor 4 compare
NIAGMN_27770 sirB1 -1.1 -1.8 invasion regulator SirB1 compare
NIAGMN_13210 espF -1.1 -1.8 type III secretion system LEE effector EspF compare
NIAGMN_01255 sIMPL -1.1 -1.6 SIMPL domain-containing protein compare
NIAGMN_01690 -1.1 -1.1 hypothetical protein compare
NIAGMN_20660 nuoL -1.1 -2.9 NADH-quinone oxidoreductase subunit L compare
NIAGMN_19600 arsC -1.1 -0.9 arsenate reductase (glutaredoxin) compare
NIAGMN_20000 yfeR -1.1 -1.8 Uncharacterized HTH-type transcriptional regulator YfeR compare
NIAGMN_24745 potB -1.1 -1.5 spermidine/putrescine ABC transporter permease PotB compare
NIAGMN_14695 glpD -1.0 -2.8 glycerol-3-phosphate dehydrogenase compare
NIAGMN_04610 -1.0 -0.7 holin compare
NIAGMN_23445 stxB2a -1.0 -1.5 Shiga toxin Stx2a subunit B compare
NIAGMN_01975 otsB -1.0 -1.9 trehalose-phosphatase compare
NIAGMN_01670 yobB -1.0 -1.5 Uncharacterized protein YobB compare
NIAGMN_22520 -1.0 -2.3 DNA gyrase inhibitor compare
NIAGMN_04715 ybhH -1.0 -1.0 4-oxalomesaconate tautomerase compare
NIAGMN_12895 tisB -1.0 -0.9 Small toxic protein TisB compare
NIAGMN_14760 -1.0 -1.8 NfuA family Fe-S biogenesis protein compare
NIAGMN_24340 ycfJ -1.0 -1.5 Uncharacterized protein YcfJ compare
NIAGMN_14255 hicB -1.0 -4.3 toxin-antitoxin system HicB family antitoxin compare
NIAGMN_12430 hdfR -1.0 -6.0 HTH-type transcriptional regulator HdfR compare
NIAGMN_03010 zapC -1.0 -1.3 cell division protein ZapC compare
NIAGMN_00525 rsxD -1.0 -2.8 electron transport complex subunit RsxD compare
NIAGMN_19510 bamB -1.0 -2.9 outer membrane protein assembly factor BamB compare
NIAGMN_03840 cspD -0.9 -1.3 cold shock-like protein CspD compare
NIAGMN_09500 -0.9 -1.5 Orf compare
NIAGMN_02115 -0.9 -1.0 derepression protein compare
NIAGMN_23110 gfcB -0.9 -2.2 Uncharacterized lipoprotein GfcB compare
NIAGMN_13425 waaO -0.9 -2.3 lipopolysaccharide 3-alpha-galactosyltransferase compare
NIAGMN_25815 ydcA -0.9 -1.6 Uncharacterized protein YdcA compare
NIAGMN_20410 yfcL -0.9 -2.7 Uncharacterized protein YfcL compare
NIAGMN_18665 csiR -0.9 -1.6 DNA-binding transcriptional regulator CsiR compare
NIAGMN_00680 purR -0.9 -1.6 HTH-type transcriptional repressor PurR compare
NIAGMN_24170 flgE -0.9 -1.0 flagellar hook protein FlgE compare
NIAGMN_02180 -0.9 -1.4 phage tail protein compare
NIAGMN_08675 surA -0.9 -1.6 peptidylprolyl isomerase SurA compare
NIAGMN_01865 cutC -0.9 -0.9 copper homeostasis protein CutC compare
NIAGMN_17750 ygdR -0.9 -1.1 lipoprotein YgdR compare
NIAGMN_20630 nuoF -0.9 -2.5 NADH-quinone oxidoreductase subunit NuoF compare
NIAGMN_23655 -0.9 -1.9 Uncharacterized protein H0156 compare
NIAGMN_00815 sufA -0.9 -0.9 Fe-S cluster assembly scaffold SufA compare
NIAGMN_17070 speA -0.9 -3.7 biosynthetic arginine decarboxylase compare
NIAGMN_24410 -0.9 -0.9 excisionase compare
NIAGMN_01745 lpxM -0.9 -1.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
NIAGMN_28900 sopA -0.9 -1.4 plasmid-partitioning protein SopA compare
NIAGMN_04150 iaaA -0.9 -2.5 beta-aspartyl-peptidase compare
NIAGMN_28135 -0.9 -1.1 phage tail protein compare
NIAGMN_13200 escF -0.9 -2.0 type III secretion system LEE needle filament protein EscF compare
NIAGMN_00755 ydhW -0.9 -2.0 YdhW family putative oxidoreductase system protein compare
NIAGMN_23715 rutB -0.9 -1.5 peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
NIAGMN_18645 ygaP -0.9 -0.8 thiosulfate sulfurtransferase YgaP compare
NIAGMN_15865 nusA -0.9 -2.1 Transcription termination/antitermination protein NusA compare
NIAGMN_02915 yccU -0.9 -1.2 Uncharacterized protein YccU compare
NIAGMN_01970 otsA -0.9 -1.0 alpha,alpha-trehalose-phosphate synthase compare
NIAGMN_03090 pncB -0.9 -3.5 nicotinate phosphoribosyltransferase compare
NIAGMN_23245 -0.9 -2.2 Ead/Ea22-like protein compare
NIAGMN_11910 -0.9 -1.1 hypothetical protein compare
NIAGMN_07445 araC -0.9 -2.3 AraC family transcriptional regulator compare
NIAGMN_25795 trg -0.9 -1.8 methyl-accepting chemotaxis protein Trg compare
NIAGMN_23115 -0.9 -1.3 Threonine-rich inner membrane protein GfcA compare
NIAGMN_23380 -0.9 -0.9 phage N-6-adenine-methyltransferase compare
NIAGMN_07110 -0.9 -2.3 hypothetical protein compare
NIAGMN_24180 flgG -0.9 -1.2 flagellar basal-body rod protein FlgG compare
NIAGMN_20665 nuoM -0.9 -2.2 NADH-quinone oxidoreductase subunit M compare
NIAGMN_01615 yebT -0.9 -1.7 lipid-binding membrane homeostasis protein YebT compare
NIAGMN_03505 yjiC -0.8 -1.1 glucosyl transferase compare
NIAGMN_13505 grxC -0.8 -3.5 glutaredoxin 3 compare
NIAGMN_19280 glyA -0.8 -1.9 serine hydroxymethyltransferase compare
NIAGMN_11520 zapB -0.8 -1.1 septal ring assembly protein ZapB compare
NIAGMN_23260 -0.8 -1.0 DUF1382 domain-containing protein compare
NIAGMN_00945 ydiV -0.8 -1.0 anti-FlhDC factor compare
NIAGMN_27890 ymgE -0.8 -1.0 UPF0410 protein YmgE compare
NIAGMN_06655 aroL -0.8 -2.1 shikimate kinase AroL compare
NIAGMN_04660 -0.8 -1.0 cruciferin compare
NIAGMN_24815 -0.8 -0.8 PerC family transcriptional regulator compare
NIAGMN_09145 holD -0.8 -1.0 DNA polymerase III subunit psi compare
NIAGMN_00375 tqsA -0.8 -1.6 AI-2 transporter TqsA compare
NIAGMN_02755 -0.8 -1.8 antitermination protein compare
NIAGMN_28045 menH -0.8 -1.2 alpha/beta hydrolase compare
NIAGMN_05505 -0.8 -1.4 citrate lyase acyl carrier protein 1 compare
NIAGMN_20615 nuoB -0.8 -2.5 NADH-quinone oxidoreductase subunit NuoB compare
NIAGMN_03000 rlmKL -0.8 -1.6 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL compare
NIAGMN_24795 -0.8 -2.2 DUF4222 domain-containing protein compare
NIAGMN_02405 rcsA -0.8 -0.8 transcriptional regulator RcsA compare
NIAGMN_25280 yneE -0.8 -2.2 UPF0187 protein YneE compare
NIAGMN_24885 hflD -0.8 -1.0 high frequency lysogenization protein HflD compare
NIAGMN_28820 ssb -0.8 -3.7 single-stranded DNA-binding protein compare
NIAGMN_01955 flhC -0.8 -1.6 flagellar transcriptional regulator FlhC compare
NIAGMN_10045 yjfL -0.8 -0.8 UPF0719 inner membrane protein YjfL compare
NIAGMN_02050 -0.8 -0.8 Putative transmembrane protein compare
NIAGMN_11745 -0.8 -1.8 hypothetical protein compare
NIAGMN_03065 ssuA -0.8 -2.3 aliphatic sulfonate ABC transporter substrate-binding protein SsuA compare
NIAGMN_16155 tdcR -0.8 -0.9 transcriptional activator TdcR compare
NIAGMN_03475 -0.8 -1.8 Z1636-like protein compare
NIAGMN_00830 menI -0.8 -0.6 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC102 in phage experiments

For phage MOI 10 across organisms