Experiment set1S365 for Escherichia coli HS(pFamp)R (ATCC 700891)
iri MOI10
Group: phageMedia: LB_plus_SM_buffer + Kan
Culturing: Ecoli_HSF_ML10, 48 well microplate; Epoch2, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Roniya on 3/13/24
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| Multidrug Resistance Efflux Pumps | 1 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Nucleotide sugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) | 4 | 3 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 11 | 2 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 12 | 1 |