Experiment set1S35 for Azospirillum sp. SherDot2

Compare to:

NL-CCM, start OD=0.3

200 most important genes:

  gene name fitness t score description  
MPMX19_02980 -4.3 -3.0 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_02202 -2.9 -3.4 hypothetical protein compare
MPMX19_05459 -2.9 -2.8 hypothetical protein compare
MPMX19_03906 -2.5 -13.2 Pca regulon regulatory protein compare
MPMX19_00818 -2.2 -3.9 hypothetical protein compare
MPMX19_05065 -2.2 -2.6 Farnesyl diphosphate synthase compare
MPMX19_04638 -2.2 -2.8 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00152 -2.1 -2.4 hypothetical protein compare
MPMX19_02618 -2.0 -2.5 Transcriptional regulatory protein BaeR compare
MPMX19_00846 -2.0 -2.6 hypothetical protein compare
MPMX19_04079 -1.9 -1.8 hypothetical protein compare
MPMX19_04008 -1.8 -1.4 Beta-peptidyl aminopeptidase BapA compare
MPMX19_02902 -1.8 -3.0 hypothetical protein compare
MPMX19_01702 -1.8 -2.4 Inorganic triphosphatase compare
MPMX19_02951 -1.7 -2.0 Deoxyribose-phosphate aldolase 1 compare
MPMX19_01703 -1.7 -2.3 hypothetical protein compare
MPMX19_04963 -1.7 -1.9 Cysteine desulfurase IscS compare
MPMX19_01426 -1.7 -1.9 hypothetical protein compare
MPMX19_01630 -1.6 -3.9 Phosphoribosylamine--glycine ligase compare
MPMX19_00260 -1.6 -2.1 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01111 -1.6 -3.1 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_04835 -1.6 -2.7 hypothetical protein compare
MPMX19_03196 -1.5 -2.5 hypothetical protein compare
MPMX19_03342 -1.5 -2.5 hypothetical protein compare
MPMX19_01616 -1.5 -2.3 hypothetical protein compare
MPMX19_02981 -1.5 -4.5 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00705 -1.5 -2.4 Cell division coordinator CpoB compare
MPMX19_03771 -1.5 -3.2 hypothetical protein compare
MPMX19_01720 -1.4 -2.7 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
MPMX19_00694 -1.4 -2.3 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_02553 -1.4 -4.1 Protein-export protein SecB compare
MPMX19_00838 -1.4 -2.5 GTP pyrophosphokinase rsh compare
MPMX19_01113 -1.4 -2.1 Adaptive-response sensory-kinase SasA compare
MPMX19_05181 -1.3 -2.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04115 -1.3 -1.1 Sensor histidine kinase RcsC compare
MPMX19_04952 -1.3 -1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02084 -1.3 -1.7 hypothetical protein compare
MPMX19_03634 -1.3 -2.5 Arginase compare
MPMX19_04968 -1.3 -2.2 hypothetical protein compare
MPMX19_05725 -1.3 -1.3 hypothetical protein compare
MPMX19_05818 -1.3 -1.6 hypothetical protein compare
MPMX19_03367 -1.3 -2.4 Magnetosome membrane protein 22 compare
MPMX19_00872 -1.3 -2.6 hypothetical protein compare
MPMX19_00609 -1.3 -2.9 Chemotaxis protein CheY compare
MPMX19_02538 -1.2 -1.8 hypothetical protein compare
MPMX19_01400 -1.2 -2.1 hypothetical protein compare
MPMX19_00126 -1.2 -2.4 hypothetical protein compare
MPMX19_00128 -1.2 -7.7 hypothetical protein compare
MPMX19_03314 -1.2 -3.6 2-keto-3-deoxy-L-fuconate dehydrogenase compare
MPMX19_00503 -1.2 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_03959 -1.2 -1.8 hypothetical protein compare
MPMX19_00841 -1.2 -1.7 Holo-[acyl-carrier-protein] synthase compare
MPMX19_01883 -1.2 -4.9 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_04276 -1.1 -2.0 hypothetical protein compare
MPMX19_02674 -1.1 -1.5 NADH:quinone reductase compare
MPMX19_06789 -1.1 -1.9 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX19_06267 -1.1 -2.6 hypothetical protein compare
MPMX19_03193 -1.1 -3.7 hypothetical protein compare
MPMX19_05220 -1.1 -2.2 hypothetical protein compare
MPMX19_04119 -1.1 -2.4 hypothetical protein compare
MPMX19_02806 -1.1 -1.9 HTH-type transcriptional regulator DmlR compare
MPMX19_05680 -1.1 -2.7 Cell cycle response regulator CtrA compare
MPMX19_01054 -1.1 -3.6 Aspartate carbamoyltransferase compare
MPMX19_03069 -1.1 -1.8 hypothetical protein compare
MPMX19_02267 -1.0 -1.2 hypothetical protein compare
MPMX19_06123 -1.0 -1.1 hypothetical protein compare
MPMX19_03127 -1.0 -1.8 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_02334 -1.0 -3.1 hypothetical protein compare
MPMX19_02177 -1.0 -2.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_05455 -1.0 -3.5 hypothetical protein compare
MPMX19_06320 -1.0 -2.5 hypothetical protein compare
MPMX19_05217 -1.0 -1.0 Flagellin compare
MPMX19_03421 -1.0 -2.0 hypothetical protein compare
MPMX19_05068 -1.0 -2.1 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_06746 -1.0 -0.9 Chemotaxis protein CheW compare
MPMX19_05454 -1.0 -1.9 hypothetical protein compare
MPMX19_04681 -1.0 -2.0 5-hydroxyisourate hydrolase compare
MPMX19_02116 -1.0 -1.7 Cold shock protein CspA compare
MPMX19_03609 -1.0 -1.8 HTH-type transcriptional repressor NagR compare
MPMX19_04210 -1.0 -1.3 hypothetical protein compare
MPMX19_03635 -1.0 -1.0 DNA-binding transcriptional activator DecR compare
MPMX19_05044 -1.0 -1.4 hypothetical protein compare
MPMX19_03790 -1.0 -1.3 hypothetical protein compare
MPMX19_06456 -1.0 -1.3 hypothetical protein compare
MPMX19_03212 -1.0 -2.1 hypothetical protein compare
MPMX19_05143 -0.9 -1.4 hypothetical protein compare
MPMX19_03613 -0.9 -2.2 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_00066 -0.9 -0.9 hypothetical protein compare
MPMX19_02742 -0.9 -1.7 hypothetical protein compare
MPMX19_00166 -0.9 -1.4 hypothetical protein compare
MPMX19_04000 -0.9 -2.6 Flagellar motor switch protein FliG compare
MPMX19_03329 -0.9 -2.2 hypothetical protein compare
MPMX19_05449 -0.9 -2.0 hypothetical protein compare
MPMX19_02543 -0.9 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_04933 -0.9 -3.7 hypothetical protein compare
MPMX19_06102 -0.9 -2.1 Membrane-bound lytic murein transglycosylase C compare
MPMX19_01247 -0.9 -1.5 Transcriptional regulatory protein DegU compare
MPMX19_06969 -0.9 -2.0 hypothetical protein compare
MPMX19_01918 -0.9 -1.2 tRNA-Ala compare
MPMX19_06579 -0.9 -1.9 Carnitine monooxygenase oxygenase subunit compare
MPMX19_01330 -0.9 -2.0 3-mercaptopyruvate sulfurtransferase compare
MPMX19_05779 -0.9 -1.4 Beta-ketoadipyl-CoA thiolase compare
MPMX19_01153 -0.9 -1.7 hypothetical protein compare
MPMX19_04449 -0.9 -1.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_00976 -0.9 -1.5 ATP-dependent RNA helicase RhlE compare
MPMX19_03157 -0.9 -1.4 hypothetical protein compare
MPMX19_04092 -0.9 -3.6 Flagellar motor switch protein FliN compare
MPMX19_04204 -0.9 -4.3 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_06236 -0.9 -1.9 hypothetical protein compare
MPMX19_04354 -0.9 -1.7 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04265 -0.9 -1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05727 -0.9 -3.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_03642 -0.9 -1.4 hypothetical protein compare
MPMX19_05448 -0.9 -1.9 DNA-invertase hin compare
MPMX19_05445 -0.9 -2.0 tRNA-Glu compare
MPMX19_05466 -0.8 -3.8 hypothetical protein compare
MPMX19_01497 -0.8 -2.3 hypothetical protein compare
MPMX19_05558 -0.8 -3.4 Chemotaxis protein CheY compare
MPMX19_01939 -0.8 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_05930 -0.8 -1.6 Dipeptidyl-peptidase 6 compare
MPMX19_06928 -0.8 -1.4 hypothetical protein compare
MPMX19_02657 -0.8 -6.8 Glutamate synthase [NADPH] large chain compare
MPMX19_04617 -0.8 -2.8 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_06309 -0.8 -2.0 hypothetical protein compare
MPMX19_05152 -0.8 -1.6 Phosphonoacetaldehyde hydrolase compare
MPMX19_05686 -0.8 -1.8 Chemotaxis protein CheY compare
MPMX19_00182 -0.8 -1.4 hypothetical protein compare
MPMX19_04013 -0.8 -2.1 hypothetical protein compare
MPMX19_00008 -0.8 -1.1 hypothetical protein compare
MPMX19_02658 -0.8 -5.3 Glutamate synthase [NADPH] small chain compare
MPMX19_02876 -0.8 -2.2 hypothetical protein compare
MPMX19_05442 -0.8 -1.8 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_01714 -0.8 -1.0 tRNA-modifying protein YgfZ compare
MPMX19_03035 -0.8 -1.9 Protein YceI compare
MPMX19_03197 -0.8 -1.6 hypothetical protein compare
MPMX19_05496 -0.8 -1.9 hypothetical protein compare
MPMX19_05874 -0.8 -1.7 2-keto-4-pentenoate hydratase compare
MPMX19_06691 -0.8 -2.0 hypothetical protein compare
MPMX19_05070 -0.8 -2.8 hypothetical protein compare
MPMX19_06677 -0.8 -1.4 hypothetical protein compare
MPMX19_01545 -0.8 -1.0 Lon protease compare
MPMX19_05996 -0.8 -2.0 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_00862 -0.8 -4.2 hypothetical protein compare
MPMX19_01248 -0.8 -2.6 hypothetical protein compare
MPMX19_03871 -0.8 -1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03124 -0.8 -3.3 Citrate lyase subunit beta compare
MPMX19_05872 -0.8 -1.0 Redox-sensitive transcriptional activator SoxR compare
MPMX19_02711 -0.8 -2.5 Tyrosine recombinase XerC compare
MPMX19_02531 -0.8 -1.2 hypothetical protein compare
MPMX19_01586 -0.8 -1.6 hypothetical protein compare
MPMX19_05786 -0.7 -2.3 HTH-type transcriptional repressor RspR compare
MPMX19_03722 -0.7 -1.2 hypothetical protein compare
MPMX19_01585 -0.7 -1.6 Zinc uptake regulation protein compare
MPMX19_04010 -0.7 -1.5 Isoaspartyl peptidase compare
MPMX19_05083 -0.7 -2.5 hypothetical protein compare
MPMX19_00141 -0.7 -1.7 hypothetical protein compare
MPMX19_04214 -0.7 -2.3 hypothetical protein compare
MPMX19_01560 -0.7 -1.6 3'-5' exonuclease DinG compare
MPMX19_06815 -0.7 -1.2 hypothetical protein compare
MPMX19_00236 -0.7 -1.7 HTH-type transcriptional regulator IscR compare
MPMX19_02241 -0.7 -1.3 hypothetical protein compare
MPMX19_03803 -0.7 -1.6 hypothetical protein compare
MPMX19_03195 -0.7 -1.1 hypothetical protein compare
MPMX19_01884 -0.7 -1.6 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_03738 -0.7 -2.3 hypothetical protein compare
MPMX19_05295 -0.7 -1.5 hypothetical protein compare
MPMX19_05954 -0.7 -2.5 hypothetical protein compare
MPMX19_03752 -0.7 -1.0 hypothetical protein compare
MPMX19_05144 -0.7 -1.4 hypothetical protein compare
MPMX19_05473 -0.7 -2.1 hypothetical protein compare
MPMX19_04913 -0.7 -0.8 hypothetical protein compare
MPMX19_04869 -0.7 -2.4 DNA polymerase I compare
MPMX19_04942 -0.7 -3.5 hypothetical protein compare
MPMX19_01394 -0.7 -1.0 hypothetical protein compare
MPMX19_02134 -0.7 -2.7 Phage shock protein C compare
MPMX19_01494 -0.7 -3.7 Flagellar P-ring protein compare
MPMX19_05013 -0.7 -2.4 Cytochrome b compare
MPMX19_04930 -0.7 -3.2 Hydrogen peroxide-inducible genes activator compare
MPMX19_05014 -0.7 -1.3 Cytochrome c1 compare
MPMX19_03870 -0.7 -1.2 L-aspartate dehydrogenase compare
MPMX19_06437 -0.7 -1.4 DNA-invertase hin compare
MPMX19_05524 -0.7 -2.8 hypothetical protein compare
MPMX19_04950 -0.7 -2.8 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_01576 -0.7 -2.2 hypothetical protein compare
MPMX19_06455 -0.7 -2.8 Tyrosine recombinase XerC compare
MPMX19_02580 -0.7 -1.5 Acetyltransferase compare
MPMX19_02757 -0.7 -1.7 Glutathione transport system permease protein GsiD compare
MPMX19_00504 -0.7 -2.2 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_00061 -0.7 -1.6 L-lysine 2,3-aminomutase compare
MPMX19_03064 -0.7 -2.1 Cytochrome c-type protein NapC compare
MPMX19_01014 -0.7 -2.5 Indole-3-glycerol phosphate synthase compare
MPMX19_02965 -0.7 -2.1 hypothetical protein compare
MPMX19_03765 -0.7 -2.1 hypothetical protein compare
MPMX19_06723 -0.7 -1.8 hypothetical protein compare
MPMX19_00543 -0.7 -1.3 Molybdenum cofactor guanylyltransferase compare
MPMX19_04688 -0.7 -2.0 Bicarbonate transport ATP-binding protein CmpD compare
MPMX19_02979 -0.7 -1.9 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_06567 -0.7 -1.8 hypothetical protein compare
MPMX19_05376 -0.7 -2.1 hypothetical protein compare
MPMX19_06926 -0.7 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm experiments