Experiment set1S35 for Azospirillum sp. SherDot2

Compare to:

NL-CCM, start OD=0.3

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06519 +1.2 2.1 HTH-type transcriptional repressor NagR compare
MPMX19_03939 +1.2 3.9 Enoyl-CoA-hydratase compare
MPMX19_01101 +0.9 2.6 hypothetical protein compare
MPMX19_02937 +0.9 2.2 hypothetical protein compare
MPMX19_03756 +0.9 2.0 hypothetical protein compare
MPMX19_03504 +0.9 1.8 Sulfur carrier protein FdhD compare
MPMX19_02778 +0.9 2.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03655 +0.9 2.0 hypothetical protein compare
MPMX19_03039 +0.9 2.3 Cyclic AMP receptor protein compare
MPMX19_01243 +0.9 1.5 hypothetical protein compare
MPMX19_04682 +0.9 1.8 hypothetical protein compare
MPMX19_00478 +0.9 2.1 putative protein RP812 compare
MPMX19_02816 +0.8 2.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06759 +0.8 2.2 Taurine import ATP-binding protein TauB compare
MPMX19_00813 +0.8 1.4 HTH-type transcriptional regulator CysL compare
MPMX19_04095 +0.8 2.5 hypothetical protein compare
MPMX19_06326 +0.8 2.7 hypothetical protein compare
MPMX19_01125 +0.8 1.4 hypothetical protein compare
MPMX19_06765 +0.8 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_00031 +0.7 1.8 hypothetical protein compare
MPMX19_01353 +0.7 1.9 hypothetical protein compare
MPMX19_04791 +0.7 1.6 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_00839 +0.7 1.8 hypothetical protein compare
MPMX19_01811 +0.7 2.1 hypothetical protein compare
MPMX19_01831 +0.7 3.0 hypothetical protein compare
MPMX19_00170 +0.7 2.4 hypothetical protein compare
MPMX19_03800 +0.7 1.4 hypothetical protein compare
MPMX19_06235 +0.7 1.6 Glycine cleavage system transcriptional activator compare
MPMX19_02218 +0.7 1.2 hypothetical protein compare
MPMX19_03476 +0.7 2.5 hypothetical protein compare
MPMX19_06492 +0.7 3.0 IS5 family transposase ISAzs10 compare
MPMX19_06510 +0.7 2.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_04726 +0.7 2.1 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06785 +0.7 1.8 L-idonate 5-dehydrogenase (NAD(P)(+)) compare
MPMX19_06539 +0.7 1.1 hypothetical protein compare
MPMX19_01864 +0.7 1.6 Regulatory protein AtoC compare
MPMX19_04792 +0.7 2.4 hypothetical protein compare
MPMX19_02735 +0.7 1.4 Sensor histidine kinase RcsC compare
MPMX19_03112 +0.6 3.0 Ribonuclease BN compare
MPMX19_05825 +0.6 1.9 hypothetical protein compare
MPMX19_00718 +0.6 1.6 hypothetical protein compare
MPMX19_06872 +0.6 2.5 Short-chain-enoyl-CoA hydratase compare
MPMX19_02865 +0.6 2.2 hypothetical protein compare
MPMX19_06464 +0.6 1.5 Tryptophan synthase beta chain compare
MPMX19_06197 +0.6 0.6 hypothetical protein compare
MPMX19_03937 +0.6 2.5 Acyl-CoA dehydrogenase compare
MPMX19_04501 +0.6 1.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06985 +0.6 1.3 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_05300 +0.6 2.4 Signal transduction histidine-protein kinase AtoS compare
MPMX19_04633 +0.6 2.2 hypothetical protein compare
MPMX19_01875 +0.6 2.3 hypothetical protein compare
MPMX19_04246 +0.6 1.9 hypothetical protein compare
MPMX19_00824 +0.6 3.9 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
MPMX19_03816 +0.6 1.2 hypothetical protein compare
MPMX19_03014 +0.6 2.7 Transcriptional activatory protein AadR compare
MPMX19_03963 +0.6 3.3 hypothetical protein compare
MPMX19_02295 +0.6 3.0 Periplasmic nitrate reductase, electron transfer subunit compare
MPMX19_03823 +0.6 1.8 hypothetical protein compare
MPMX19_03866 +0.6 1.3 Ribose import permease protein RbsC compare
MPMX19_03340 +0.6 1.8 hypothetical protein compare
MPMX19_00608 +0.6 0.8 hypothetical protein compare
MPMX19_05207 +0.6 1.2 Hemolysin secretion protein D, plasmid compare
MPMX19_03538 +0.6 1.8 HTH-type transcriptional repressor NagR compare
MPMX19_06144 +0.6 1.8 hypothetical protein compare
MPMX19_04323 +0.6 1.6 Segregation and condensation protein B compare
MPMX19_03072 +0.6 1.0 hypothetical protein compare
MPMX19_06488 +0.6 1.4 Taurine-binding periplasmic protein compare
MPMX19_03350 +0.6 3.4 GTP 3',8-cyclase compare
MPMX19_06116 +0.6 2.3 putative ribonucleotide transport ATP-binding protein mkl compare
MPMX19_06804 +0.6 1.3 hypothetical protein compare
MPMX19_03846 +0.6 1.7 hypothetical protein compare
MPMX19_06217 +0.6 2.3 Fructose import ATP-binding protein FruK compare
MPMX19_06169 +0.6 2.3 hypothetical protein compare
MPMX19_03825 +0.6 1.2 IS5 family transposase IS4811 compare
MPMX19_05358 +0.6 0.7 hypothetical protein compare
MPMX19_03169 +0.6 1.3 Dihydroanticapsin 7-dehydrogenase compare
MPMX19_04120 +0.5 1.5 hypothetical protein compare
MPMX19_01600 +0.5 2.3 hypothetical protein compare
MPMX19_06017 +0.5 2.2 hypothetical protein compare
MPMX19_06907 +0.5 1.5 L-talarate/galactarate dehydratase compare
MPMX19_02860 +0.5 1.8 hypothetical protein compare
MPMX19_03375 +0.5 2.2 Outer membrane protein TolC compare
MPMX19_03308 +0.5 1.8 hypothetical protein compare
MPMX19_03500 +0.5 2.3 Sulfur carrier protein FdhD compare
MPMX19_04620 +0.5 1.7 HTH-type transcriptional regulator CynR compare
MPMX19_01493 +0.5 1.7 Flagellar assembly protein FliX compare
MPMX19_00010 +0.5 2.3 Transcriptional regulatory protein OmpR compare
MPMX19_00297 +0.5 1.0 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_01401 +0.5 1.3 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_01643 +0.5 2.6 hypothetical protein compare
MPMX19_06006 +0.5 1.7 hypothetical protein compare
MPMX19_00414 +0.5 1.4 Pyruvate dehydrogenase complex repressor compare
MPMX19_04161 +0.5 1.2 hypothetical protein compare
MPMX19_04531 +0.5 1.6 hypothetical protein compare
MPMX19_05016 +0.5 0.7 Sensor histidine kinase RcsC compare
MPMX19_03631 +0.5 0.9 hypothetical protein compare
MPMX19_04568 +0.5 1.9 hypothetical protein compare
MPMX19_05862 +0.5 1.8 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_02063 +0.5 2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04513 +0.5 2.1 Adaptive-response sensory-kinase SasA compare
MPMX19_01877 +0.5 2.0 hypothetical protein compare
MPMX19_05729 +0.5 2.5 hypothetical protein compare
MPMX19_06773 +0.5 1.5 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_03869 +0.5 2.6 hypothetical protein compare
MPMX19_06194 +0.5 2.3 Flagellar basal-body rod protein FlgC compare
MPMX19_03102 +0.5 2.3 hypothetical protein compare
MPMX19_06885 +0.5 1.1 Nitrate import ATP-binding protein NrtD compare
MPMX19_05324 +0.5 3.1 hypothetical protein compare
MPMX19_06134 +0.5 1.7 hypothetical protein compare
MPMX19_01858 +0.5 2.4 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP compare
MPMX19_06467 +0.5 2.1 hypothetical protein compare
MPMX19_04674 +0.5 2.9 hypothetical protein compare
MPMX19_06405 +0.5 2.1 hypothetical protein compare
MPMX19_00020 +0.5 0.7 hypothetical protein compare
MPMX19_02308 +0.5 2.2 hypothetical protein compare
MPMX19_02043 +0.5 2.6 hypothetical protein compare
MPMX19_04125 +0.5 2.2 hypothetical protein compare
MPMX19_06481 +0.5 2.6 Thiosulfate sulfurtransferase GlpE compare
MPMX19_04211 +0.5 1.6 hypothetical protein compare
MPMX19_00764 +0.5 1.3 ECF RNA polymerase sigma factor EcfG compare
MPMX19_00258 +0.5 1.3 Protein ImuB compare
MPMX19_03784 +0.5 1.4 hypothetical protein compare
MPMX19_00244 +0.5 1.6 hypothetical protein compare
MPMX19_02987 +0.5 1.0 hypothetical protein compare
MPMX19_06896 +0.5 1.2 L-aspartate oxidase compare
MPMX19_04693 +0.5 1.8 hypothetical protein compare
MPMX19_03083 +0.5 1.0 hypothetical protein compare
MPMX19_05189 +0.5 1.0 hypothetical protein compare
MPMX19_04739 +0.5 1.7 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
MPMX19_03575 +0.5 1.5 HTH-type transcriptional regulator NimR compare
MPMX19_05191 +0.5 2.2 Phenylacetate-coenzyme A ligase compare
MPMX19_01947 +0.5 1.3 Chemotaxis protein CheY compare
MPMX19_06825 +0.5 2.6 hypothetical protein compare
MPMX19_03874 +0.5 1.6 hypothetical protein compare
MPMX19_05293 +0.5 1.7 hypothetical protein compare
MPMX19_00186 +0.5 1.0 hypothetical protein compare
MPMX19_04724 +0.5 1.2 hypothetical protein compare
MPMX19_06984 +0.5 1.5 Mesaconyl-C(4)-CoA hydratase compare
MPMX19_05364 +0.5 2.0 Acetate CoA-transferase subunit beta compare
MPMX19_04725 +0.5 2.8 Glycine betaine/choline transport system ATP-binding protein OusV compare
MPMX19_06260 +0.5 1.9 hypothetical protein compare
MPMX19_06912 +0.5 2.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05162 +0.4 1.5 Ferrous-iron efflux pump FieF compare
MPMX19_02787 +0.4 1.6 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_06132 +0.4 2.0 hypothetical protein compare
MPMX19_00035 +0.4 2.3 hypothetical protein compare
MPMX19_06199 +0.4 1.6 GTPase HflX compare
MPMX19_02405 +0.4 1.4 hypothetical protein compare
MPMX19_04062 +0.4 2.4 hypothetical protein compare
MPMX19_02588 +0.4 1.7 Adenosyl-chloride synthase compare
MPMX19_00295 +0.4 1.8 Transcriptional regulatory protein QseB compare
MPMX19_05762 +0.4 1.1 hypothetical protein compare
MPMX19_03731 +0.4 1.5 hypothetical protein compare
MPMX19_03054 +0.4 1.8 putative ABC transporter permease protein NosY compare
MPMX19_06460 +0.4 1.2 DNA-invertase hin compare
MPMX19_05402 +0.4 2.0 hypothetical protein compare
MPMX19_03901 +0.4 2.3 Glyoxylate/hydroxypyruvate reductase B compare
MPMX19_01841 +0.4 1.3 hypothetical protein compare
MPMX19_05179 +0.4 2.9 Putative aliphatic sulfonates-binding protein compare
MPMX19_04909 +0.4 1.5 hypothetical protein compare
MPMX19_01994 +0.4 2.8 Bacterioferritin compare
MPMX19_05520 +0.4 1.8 hypothetical protein compare
MPMX19_06281 +0.4 1.3 hypothetical protein compare
MPMX19_06962 +0.4 1.7 hypothetical protein compare
MPMX19_04652 +0.4 2.4 3-isopropylmalate dehydratase large subunit compare
MPMX19_06263 +0.4 1.3 hypothetical protein compare
MPMX19_01766 +0.4 2.0 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_01559 +0.4 1.5 hypothetical protein compare
MPMX19_05737 +0.4 1.7 hypothetical protein compare
MPMX19_02803 +0.4 1.2 putative FAD-linked oxidoreductase compare
MPMX19_06526 +0.4 1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04738 +0.4 0.9 hypothetical protein compare
MPMX19_05178 +0.4 1.6 Alkanesulfonate monooxygenase compare
MPMX19_04691 +0.4 2.4 hypothetical protein compare
MPMX19_05430 +0.4 0.7 HTH-type transcriptional regulator DmlR compare
MPMX19_02918 +0.4 1.5 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
MPMX19_04039 +0.4 2.3 Inosose dehydratase compare
MPMX19_04668 +0.4 1.0 HTH-type transcriptional regulator DmlR compare
MPMX19_04569 +0.4 1.5 Anti-sigma-F factor NrsF compare
MPMX19_00717 +0.4 2.0 hypothetical protein compare
MPMX19_01729 +0.4 0.8 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_03088 +0.4 2.1 putative RNA polymerase sigma factor FecI compare
MPMX19_03052 +0.4 1.9 hypothetical protein compare
MPMX19_00849 +0.4 1.0 hypothetical protein compare
MPMX19_05531 +0.4 2.1 Serine acetyltransferase compare
MPMX19_03439 +0.4 0.5 hypothetical protein compare
MPMX19_04509 +0.4 1.5 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_03811 +0.4 1.9 hypothetical protein compare
MPMX19_06610 +0.4 0.8 hypothetical protein compare
MPMX19_00256 +0.4 1.8 hypothetical protein compare
MPMX19_05318 +0.4 2.4 hypothetical protein compare
MPMX19_00888 +0.4 2.2 Cytochrome c oxidase assembly protein CtaG compare
MPMX19_02830 +0.4 1.7 N-carbamoyl-L-amino-acid hydrolase compare
MPMX19_05551 +0.4 0.6 Chemotaxis protein CheY compare
MPMX19_04529 +0.4 2.5 hypothetical protein compare
MPMX19_03011 +0.4 1.2 hypothetical protein compare
MPMX19_04484 +0.4 1.6 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX19_02633 +0.4 2.1 Chaperone protein DnaJ compare
MPMX19_06537 +0.4 1.9 NADH-dependent FMN reductase SfnF compare
MPMX19_05342 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm experiments