Experiment set1S337 for Pseudomonas sp. SVBP6

Compare to:

supernatant control, M9 with 0.25X LB

200 most important genes:

  gene name fitness t score description  
COO64_RS17020 dinG -3.0 -2.1 ATP-dependent DNA helicase DinG compare
COO64_RS15235 greA -2.9 -2.8 transcription elongation factor GreA compare
COO64_RS01745 -2.7 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
COO64_RS07295 purM -2.7 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
COO64_RS13575 -2.5 -5.6 aspartate carbamoyltransferase catalytic subunit compare
COO64_RS13555 -2.3 -2.7 gamma-butyrobetaine hydroxylase-like domain-containing protein compare
COO64_RS17670 -2.2 -4.2 glycosyltransferase compare
COO64_RS13045 -2.2 -8.1 malic enzyme-like NAD(P)-binding protein compare
COO64_RS15550 lptE -2.2 -3.8 LPS assembly lipoprotein LptE compare
COO64_RS02680 recB -2.1 -2.9 exodeoxyribonuclease V subunit beta compare
COO64_RS04695 purL -2.1 -6.1 phosphoribosylformylglycinamidine synthase compare
COO64_RS18300 purD -2.1 -4.2 phosphoribosylamine--glycine ligase compare
COO64_RS20260 purC -2.1 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
COO64_RS01700 pstB -2.1 -4.3 phosphate ABC transporter ATP-binding protein PstB compare
COO64_RS22030 -2.0 -2.7 MaoC family dehydratase compare
COO64_RS18305 purH -1.9 -4.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
COO64_RS04600 -1.9 -2.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
COO64_RS11480 -1.9 -2.5 HlyD family secretion protein compare
COO64_RS07050 -1.9 -4.8 HlyD family secretion protein compare
COO64_RS07335 cysM -1.9 -3.4 cysteine synthase CysM compare
COO64_RS15240 carB -1.8 -5.7 carbamoyl-phosphate synthase large subunit compare
COO64_RS15090 -1.8 -8.0 sigma-54 dependent transcriptional regulator compare
COO64_RS06575 pyrF -1.8 -1.9 orotidine-5'-phosphate decarboxylase compare
COO64_RS02685 recD -1.7 -3.8 exodeoxyribonuclease V subunit alpha compare
COO64_RS26440 lapG -1.7 -8.4 cysteine protease LapG compare
COO64_RS01845 uvrD -1.7 -9.4 DNA helicase II compare
COO64_RS01495 pyrE -1.6 -5.1 orotate phosphoribosyltransferase compare
COO64_RS15245 carA -1.6 -2.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
COO64_RS20095 ruvA -1.5 -3.7 Holliday junction branch migration protein RuvA compare
COO64_RS05630 truA -1.5 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
COO64_RS05600 purF -1.5 -8.7 amidophosphoribosyltransferase compare
COO64_RS02000 hcnA -1.5 -1.6 cyanide-forming glycine dehydrogenase subunit HcnA compare
COO64_RS19130 -1.4 -1.3 tRNA-Leu compare
COO64_RS09730 -1.4 -1.9 Mpo1-like protein compare
COO64_RS16070 -1.4 -4.0 MFS transporter compare
COO64_RS19195 clpP -1.4 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
COO64_RS10175 -1.3 -4.3 cyclic peptide export ABC transporter compare
COO64_RS17665 -1.3 -2.8 carbamoyltransferase compare
COO64_RS11515 -1.3 -1.8 SDR family NAD(P)-dependent oxidoreductase compare
COO64_RS05235 -1.3 -3.2 glutaredoxin family protein compare
COO64_RS11150 -1.3 -1.9 tRNA-Thr compare
COO64_RS02675 recC -1.3 -3.2 exodeoxyribonuclease V subunit gamma compare
COO64_RS07055 -1.2 -4.9 DHA2 family efflux MFS transporter permease subunit compare
COO64_RS04595 pgl -1.2 -1.8 6-phosphogluconolactonase compare
COO64_RS05795 fabF -1.2 -4.6 beta-ketoacyl-ACP synthase II compare
COO64_RS09410 topA -1.2 -3.8 type I DNA topoisomerase compare
COO64_RS00700 ompR -1.2 -2.4 two-component system response regulator OmpR compare
COO64_RS18430 -1.2 -1.6 hypothetical protein compare
COO64_RS01710 -1.2 -7.1 ABC transporter permease subunit compare
COO64_RS17820 serB -1.1 -6.2 phosphoserine phosphatase SerB compare
COO64_RS13570 -1.1 -3.0 dihydroorotase compare
COO64_RS12640 serA -1.1 -5.4 phosphoglycerate dehydrogenase compare
COO64_RS19210 -1.1 -1.8 HU family DNA-binding protein compare
COO64_RS04910 xerD -1.1 -4.5 site-specific tyrosine recombinase XerD compare
COO64_RS01715 -1.1 -4.3 phosphate ABC transporter substrate-binding protein PstS compare
COO64_RS19200 clpX -1.1 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
COO64_RS13385 -1.1 -2.1 outer membrane protein assembly factor BamE compare
COO64_RS07300 purN -1.0 -4.5 phosphoribosylglycinamide formyltransferase compare
COO64_RS16930 dcd -1.0 -3.2 dCTP deaminase compare
COO64_RS24180 ftsK -1.0 -3.2 DNA translocase FtsK compare
COO64_RS10350 rbsD -1.0 -2.0 D-ribose pyranase compare
COO64_RS24270 -1.0 -2.1 NADH-quinone oxidoreductase subunit A compare
COO64_RS06740 -1.0 -1.6 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
COO64_RS27355 -1.0 -1.6 Arc family DNA-binding protein compare
COO64_RS01270 xerC -1.0 -3.2 tyrosine recombinase XerC compare
COO64_RS13820 -1.0 -2.3 sigma-54-dependent Fis family transcriptional regulator compare
COO64_RS00510 -1.0 -1.7 Imm30 family immunity protein compare
COO64_RS23475 -1.0 -1.5 Flp family type IVb pilin compare
COO64_RS18515 -1.0 -1.7 GntR family transcriptional regulator compare
COO64_RS04135 -1.0 -1.6 response regulator transcription factor compare
COO64_RS04130 -1.0 -4.3 ATP-binding protein compare
COO64_RS15620 rsfS -0.9 -1.9 ribosome silencing factor compare
COO64_RS24245 -0.9 -1.3 cupin domain-containing protein compare
COO64_RS16545 lepA -0.9 -3.9 translation elongation factor 4 compare
COO64_RS02495 dsbA -0.9 -3.6 thiol:disulfide interchange protein DsbA compare
COO64_RS03850 tgt -0.9 -3.8 tRNA guanosine(34) transglycosylase Tgt compare
COO64_RS12445 -0.9 -2.6 CBS domain-containing protein compare
COO64_RS04060 -0.9 -3.6 peptide chain release factor 3 compare
COO64_RS12710 -0.9 -1.2 sulfite exporter TauE/SafE family protein compare
COO64_RS20350 -0.9 -1.2 hypothetical protein compare
COO64_RS15300 smpB -0.8 -2.9 SsrA-binding protein SmpB compare
COO64_RS26725 -0.8 -1.8 hypothetical protein compare
COO64_RS17895 miaA -0.8 -4.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
COO64_RS19405 -0.8 -2.4 Na+/H+ antiporter subunit C compare
COO64_RS01415 -0.8 -2.0 DUF1127 domain-containing protein compare
COO64_RS22700 -0.8 -1.1 hypothetical protein compare
COO64_RS07045 -0.8 -3.9 DUF3050 domain-containing protein compare
COO64_RS09985 -0.8 -1.6 response regulator transcription factor compare
COO64_RS00770 tauB -0.8 -2.1 taurine ABC transporter ATP-binding subunit compare
COO64_RS02490 -0.8 -3.8 cytochrome c compare
COO64_RS02075 rsmG -0.8 -2.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
COO64_RS01560 -0.8 -3.3 RidA family protein compare
COO64_RS03520 nadC -0.8 -1.6 carboxylating nicotinate-nucleotide diphosphorylase compare
COO64_RS14105 -0.8 -0.9 c-type cytochrome compare
COO64_RS15085 -0.8 -6.3 sensor histidine kinase compare
COO64_RS03930 ndk -0.8 -1.7 nucleoside-diphosphate kinase compare
COO64_RS11970 -0.8 -3.9 putative 2-dehydropantoate 2-reductase compare
COO64_RS18660 -0.8 -2.2 heavy metal translocating P-type ATPase compare
COO64_RS18650 -0.8 -2.0 sulfite exporter TauE/SafE family protein compare
COO64_RS04950 -0.8 -1.3 EAL domain-containing protein compare
COO64_RS04300 lptC -0.8 -3.4 LPS export ABC transporter periplasmic protein LptC compare
COO64_RS03185 ychF -0.8 -2.4 redox-regulated ATPase YchF compare
COO64_RS15005 -0.8 -5.1 acetolactate synthase 3 large subunit compare
COO64_RS02700 -0.8 -1.1 OmpA family protein compare
COO64_RS02200 -0.8 -2.2 lysophospholipid acyltransferase compare
COO64_RS10315 -0.8 -1.4 DUF1654 domain-containing protein compare
COO64_RS04140 -0.8 -1.0 hypothetical protein compare
COO64_RS22655 pqqD -0.7 -1.8 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
COO64_RS05860 -0.7 -2.5 low molecular weight protein-tyrosine-phosphatase compare
COO64_RS27575 -0.7 -2.3 cold-shock protein compare
COO64_RS08350 -0.7 -1.8 cell wall hydrolase compare
COO64_RS11085 -0.7 -1.2 tRNA-Pro compare
COO64_RS24275 -0.7 -1.8 NADH-quinone oxidoreductase subunit B compare
COO64_RS04390 -0.7 -1.1 HU family DNA-binding protein compare
COO64_RS14305 -0.7 -1.3 hypothetical protein compare
COO64_RS21735 rluB -0.7 -2.5 23S rRNA pseudouridine(2605) synthase RluB compare
COO64_RS01075 ppx -0.7 -2.0 exopolyphosphatase compare
COO64_RS11760 -0.7 -1.8 alpha/beta hydrolase compare
COO64_RS07495 -0.7 -1.7 histone-like nucleoid-structuring protein, MvaT/MvaU family compare
COO64_RS13635 -0.7 -2.2 chemotaxis protein CheW compare
COO64_RS13605 gshB -0.7 -2.1 glutathione synthase compare
COO64_RS06265 -0.7 -1.6 hypothetical protein compare
COO64_RS04590 zwf -0.7 -4.5 glucose-6-phosphate dehydrogenase compare
COO64_RS09055 -0.7 -3.1 hypothetical protein compare
COO64_RS20250 bamC -0.7 -3.3 outer membrane protein assembly factor BamC compare
COO64_RS01375 -0.7 -1.7 cytochrome c5 family protein compare
COO64_RS27435 -0.7 -1.4 hypothetical protein compare
COO64_RS23105 -0.7 -2.0 YceK/YidQ family lipoprotein compare
COO64_RS11965 -0.7 -2.9 ATP-binding protein compare
COO64_RS09335 -0.7 -1.2 lysis system i-spanin subunit Rz compare
COO64_RS13520 -0.6 -1.2 polyhydroxyalkanoic acid system family protein compare
COO64_RS01210 argH -0.6 -1.8 argininosuccinate lyase compare
COO64_RS14935 -0.6 -1.6 VOC family protein compare
COO64_RS25800 -0.6 -1.2 Lrp/AsnC family transcriptional regulator compare
COO64_RS12295 pcaC -0.6 -1.8 4-carboxymuconolactone decarboxylase compare
COO64_RS22810 -0.6 -2.1 lipopolysaccharide kinase InaA family protein compare
COO64_RS24280 nuoC -0.6 -2.6 NADH-quinone oxidoreductase subunit C/D compare
COO64_RS20635 -0.6 -2.2 CAP domain-containing protein compare
COO64_RS20090 ruvC -0.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
COO64_RS18135 cbpA -0.6 -2.0 curved DNA-binding protein compare
COO64_RS14920 -0.6 -0.8 YceK/YidQ family lipoprotein compare
COO64_RS24310 nuoJ -0.6 -1.0 NADH-quinone oxidoreductase subunit J compare
COO64_RS16615 cmoA -0.6 -2.3 carboxy-S-adenosyl-L-methionine synthase CmoA compare
COO64_RS06375 -0.6 -1.0 GPW/gp25 family protein compare
COO64_RS12480 gabT -0.6 -4.1 4-aminobutyrate--2-oxoglutarate transaminase compare
COO64_RS01255 lysA -0.6 -3.2 diaminopimelate decarboxylase compare
COO64_RS05360 -0.6 -1.0 CrfX protein compare
COO64_RS01140 -0.6 -1.1 mechanosensitive ion channel family protein compare
COO64_RS16360 -0.6 -0.8 RNA polymerase sigma factor compare
COO64_RS11855 mraZ -0.6 -2.1 division/cell wall cluster transcriptional repressor MraZ compare
COO64_RS08585 -0.6 -2.4 SDR family oxidoreductase compare
COO64_RS07060 -0.6 -1.8 TolC family outer membrane protein compare
COO64_RS04930 dsbC -0.6 -3.2 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
COO64_RS25165 -0.6 -2.6 endonuclease/exonuclease/phosphatase family protein compare
COO64_RS07415 -0.6 -3.9 ATP-binding protein compare
COO64_RS06495 -0.6 -1.5 phage antirepressor KilAC domain-containing protein compare
COO64_RS09830 cysB -0.6 -2.9 HTH-type transcriptional regulator CysB compare
COO64_RS11055 rluD -0.6 -2.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
COO64_RS15525 -0.6 -2.3 HlyC/CorC family transporter compare
COO64_RS14850 -0.6 -1.4 hypothetical protein compare
COO64_RS13040 -0.6 -2.0 thermonuclease family protein compare
COO64_RS26395 -0.6 -1.9 YigZ family protein compare
COO64_RS26900 -0.6 -0.6 hypothetical protein compare
COO64_RS25730 ccmI -0.6 -2.4 c-type cytochrome biogenesis protein CcmI compare
COO64_RS26595 -0.6 -1.8 MAPEG family protein compare
COO64_RS06110 -0.6 -2.0 AprI/Inh family metalloprotease inhibitor compare
COO64_RS20920 -0.6 -0.6 DUF3302 domain-containing protein compare
COO64_RS24330 nuoN -0.6 -2.2 NADH-quinone oxidoreductase subunit NuoN compare
COO64_RS02290 -0.6 -1.2 dodecin compare
COO64_RS01705 pstA -0.6 -3.3 phosphate ABC transporter permease PstA compare
COO64_RS05815 plsX -0.6 -3.8 phosphate acyltransferase PlsX compare
COO64_RS19710 rnhB -0.6 -1.9 ribonuclease HII compare
COO64_RS03735 -0.6 -2.0 GNAT family N-acetyltransferase compare
COO64_RS24745 -0.6 -1.8 gamma-carboxygeranoyl-CoA hydratase compare
COO64_RS02425 -0.6 -1.6 methionine ABC transporter permease compare
COO64_RS21695 -0.6 -2.1 DUF1120 domain-containing protein compare
COO64_RS11485 -0.6 -2.4 efflux transporter outer membrane subunit compare
COO64_RS17230 -0.6 -5.1 16S ribosomal RNA compare
COO64_RS21680 arfB -0.5 -1.3 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
COO64_RS17685 -0.5 -3.9 glycosyltransferase compare
COO64_RS15950 -0.5 -3.0 sugar nucleotide-binding protein compare
COO64_RS27830 -0.5 -1.8 hypothetical protein compare
COO64_RS22110 -0.5 -1.9 GNAT family N-acetyltransferase compare
COO64_RS16565 recO -0.5 -1.5 DNA repair protein RecO compare
COO64_RS09385 -0.5 -1.5 hypothetical protein compare
COO64_RS24005 -0.5 -2.6 phage portal protein compare
COO64_RS14640 cobW -0.5 -1.5 cobalamin biosynthesis protein CobW compare
COO64_RS15195 secG -0.5 -1.9 preprotein translocase subunit SecG compare
COO64_RS16330 birA -0.5 -1.2 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA compare
COO64_RS07310 -0.5 -1.1 hypothetical protein compare
COO64_RS14655 -0.5 -1.3 VWA domain-containing protein compare
COO64_RS05345 -0.5 -2.7 OmpA family protein compare
COO64_RS07740 -0.5 -1.6 bile acid:sodium symporter family protein compare
COO64_RS04260 -0.5 -2.1 ZIP family metal transporter compare
COO64_RS19075 -0.5 -1.2 ferredoxin compare
COO64_RS03220 -0.5 -2.5 tetratricopeptide repeat protein compare
COO64_RS06350 -0.5 -2.1 phage tail assembly chaperone compare
COO64_RS06260 -0.5 -1.7 cysteine hydrolase family protein compare
COO64_RS19930 recA -0.5 -1.9 recombinase RecA compare
COO64_RS10415 ihfA -0.5 -1.6 integration host factor subunit alpha compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. SVBP6 in supernatant control experiments

For supernatant control LB across organisms