Experiment set1S334 for Acinetobacter radioresistens SK82

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Ethanolamine nitrogen source

Group: nitrogen source
Media: RCH2_defined_noNitrogen + Ethanolamine (20 mM)
Culturing: Acinetobacter_SK82_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=200 rpm
By: Kiani on 5/1/24
Media components: 0.1 g/L Potassium Chloride, 0.6 g/L Sodium phosphate monobasic monohydrate, 20 mM Sodium D,L-Lactate, 30 mM PIPES sesquisodium salt, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)

Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Ethanolamine in Acinetobacter radioresistens SK82

For nitrogen source Ethanolamine across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
adenosylcobalamin salvage from cobalamin 5 5 4
adenosylcobinamide-GDP salvage from cobinamide I 5 5 3
adenosylcobinamide-GDP salvage from cobinamide II 6 4 3
adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide 6 4 3
cobalamin salvage (eukaryotic) 8 4 4
superpathway of adenosylcobalamin salvage from cobinamide I 8 8 3
superpathway of adenosylcobalamin salvage from cobinamide II 9 7 3
pyrimidine deoxyribonucleotides de novo biosynthesis II 7 5 1
adenosylcobalamin biosynthesis II (aerobic) 33 17 3
adenosylcobalamin biosynthesis I (anaerobic) 36 16 3
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) 14 12 1