Experiment set1S331 for Bacteroides ovatus ATCC 8483
Glucomannan (konjac) 2.5 mg/mL carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Glucomannan (konjac) (2.5 mg/mL)
Culturing: Bovatus_ATCC8483_ML6, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/30/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 8 genes in this experiment
For carbon source Glucomannan (konjac) in Bacteroides ovatus ATCC 8483
For carbon source Glucomannan (konjac) across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Bacterial hemoglobins | 1 |
| Iron acquisition in Vibrio | 1 |
| Predicted carbohydrate hydrolases | 1 |
| Sialic Acid Metabolism | 1 |
| Ton and Tol transport systems | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| N-acetylneuraminate and N-acetylmannosamine degradation II | 3 | 2 | 1 |
| β-(1,4)-mannan degradation | 7 | 6 | 2 |