Experiment set1S33 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES pH 4.25

200 most important genes:

  gene name fitness t score description  
OKGIIK_06880 -1.9 -1.7 Phosphatase NudJ compare
OKGIIK_01310 gcvH -1.8 -4.6 glycine cleavage system protein GcvH compare
OKGIIK_09380 -1.7 -8.6 FUSC-like domain-containing protein compare
OKGIIK_10980 -1.7 -3.6 DUF4097 domain-containing protein compare
OKGIIK_00755 pdhA -1.5 -1.6 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_01845 kup -1.5 -3.2 potassium uptake protein compare
OKGIIK_14090 argD -1.5 -9.2 aspartate aminotransferase family protein compare
OKGIIK_15615 -1.3 -2.2 Antitermination protein NusB compare
OKGIIK_02315 purM -1.3 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_04520 -1.3 -2.6 GCN5 family acetyltransferase compare
OKGIIK_11505 purL -1.2 -4.4 phosphoribosylformylglycinamidine synthase compare
OKGIIK_01195 -1.2 -3.8 ABC transporter, ATP-binding protein compare
OKGIIK_14345 nagA -1.2 -5.0 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_09315 feoB -1.2 -9.1 ferrous iron transport protein B compare
OKGIIK_01190 -1.1 -2.1 Transport permease protein compare
OKGIIK_14160 -1.1 -4.4 ABC transporter ATP-binding protein compare
OKGIIK_16915 rfaB -1.1 -8.1 glycosyl transferase compare
OKGIIK_14180 -1.1 -3.7 DNA-binding response regulator compare
OKGIIK_14150 -1.1 -7.5 Alpha/beta hydrolase compare
OKGIIK_10895 -1.1 -4.8 Histidine kinase compare
OKGIIK_01240 -1.1 -3.6 EamA domain-containing protein compare
OKGIIK_14085 mtnX -1.1 -6.0 phosphatase compare
OKGIIK_15650 ftsN -1.1 -2.6 sporulation protein compare
OKGIIK_13570 thrC -1.1 -1.8 threonine synthase compare
OKGIIK_13565 thrB -1.0 -1.7 homoserine kinase compare
OKGIIK_03740 recA -1.0 -1.2 recombinase RecA compare
OKGIIK_04565 -1.0 -1.6 hypothetical protein compare
OKGIIK_14175 -1.0 -7.2 Sensor protein QseC compare
OKGIIK_14110 fabB -1.0 -4.5 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_09310 -1.0 -2.4 DUF6587 domain-containing protein compare
OKGIIK_07900 rpoE -1.0 -5.3 RNA polymerase sigma factor RpoE compare
OKGIIK_12290 pabA -0.9 -4.0 anthranilate/aminodeoxychorismate synthase component II compare
OKGIIK_03870 Glu_trna -0.9 -1.6 tRNA-Glu compare
OKGIIK_08775 -0.9 -2.0 hypothetical protein compare
OKGIIK_09430 argH -0.9 -3.3 argininosuccinate lyase compare
OKGIIK_11965 mscL -0.9 -1.2 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_03885 panB -0.9 -1.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKGIIK_15520 pgi -0.9 -4.1 glucose-6-phosphate isomerase compare
OKGIIK_14165 lolE -0.9 -6.5 ABC transporter permease compare
OKGIIK_11520 xerD -0.9 -2.1 site-specific tyrosine recombinase XerD compare
OKGIIK_12650 -0.9 -2.0 glycine zipper 2TM domain-containing protein compare
OKGIIK_02120 lysA -0.9 -5.0 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_01135 ydcH -0.9 -2.5 DUF465 domain-containing protein compare
OKGIIK_06740 gcvP2 -0.8 -4.9 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_01125 -0.8 -3.6 DUF4398 domain-containing protein compare
OKGIIK_13440 -0.8 -5.0 type I restriction-modification system subunit M compare
OKGIIK_02260 raiA -0.8 -5.2 ribosomal subunit interface protein compare
OKGIIK_03445 -0.8 -6.1 hypothetical protein compare
OKGIIK_00990 -0.8 -2.1 TonB-dependent copper receptor compare
OKGIIK_03000 degQ -0.8 -3.9 peptidase S1 compare
OKGIIK_01235 -0.8 -5.6 Glycosyl transferases group 1 compare
OKGIIK_01155 cpsB -0.8 -2.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_01210 gmd -0.7 -5.5 GDP-mannose 4,6-dehydratase compare
OKGIIK_01265 -0.7 -5.4 Glycosyltransferase WbsX compare
OKGIIK_10000 tgt -0.7 -3.9 tRNA guanosine(34) transglycosylase Tgt compare
OKGIIK_04620 -0.7 -2.0 hypothetical protein compare
OKGIIK_07670 ccoP -0.7 -1.7 cytochrome-c oxidase, cbb3-type subunit III compare
OKGIIK_01080 fba1 -0.7 -4.6 fructose-bisphosphate aldolase class I compare
OKGIIK_01110 pgk -0.7 -2.9 phosphoglycerate kinase compare
OKGIIK_16075 -0.7 -0.9 Peptidase C13 compare
OKGIIK_09060 yurZ -0.7 -1.1 Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family compare
OKGIIK_00685 -0.7 -1.5 hypothetical protein compare
OKGIIK_00095 ybeD -0.7 -1.5 DUF493 domain-containing protein compare
OKGIIK_03865 -0.7 -1.5 ferredoxin compare
OKGIIK_09515 gph -0.7 -2.2 phosphoglycolate phosphatase compare
OKGIIK_01200 -0.7 -4.0 FkbM family methyltransferase compare
OKGIIK_14155 -0.7 -2.7 Secretion protein HlyD compare
OKGIIK_05570 purF -0.7 -2.2 amidophosphoribosyltransferase compare
OKGIIK_01225 -0.7 -4.4 glycosyltransferase compare
OKGIIK_10960 -0.7 -0.5 ABC transporter compare
OKGIIK_15710 oapA -0.7 -3.9 peptidase M23 compare
OKGIIK_09225 -0.7 -1.9 RecBCD enzyme subunit RecC compare
OKGIIK_04055 -0.7 -2.7 Putative signal peptide protein compare
OKGIIK_12320 -0.7 -3.6 AbiEi-3-N domain-containing protein compare
OKGIIK_00110 ctpA -0.7 -2.0 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_11845 -0.7 -4.2 Histidine kinase compare
OKGIIK_00415 -0.7 -1.8 hypothetical protein compare
OKGIIK_13445 -0.6 -3.7 Restriction endonuclease subunit S compare
OKGIIK_00280 -0.6 -2.1 Zeta-toxin domain-containing protein compare
OKGIIK_03860 -0.6 -3.4 hypothetical protein compare
OKGIIK_07245 -0.6 -2.8 Glycosyl transferase family 4 compare
OKGIIK_10125 glnD -0.6 -1.3 [protein-PII] uridylyltransferase compare
OKGIIK_04885 -0.6 -1.4 Outer membrane efflux protein compare
OKGIIK_05430 -0.6 -2.0 Biopolymer transporter ExbD compare
OKGIIK_07255 -0.6 -2.1 LapA-dom domain-containing protein compare
OKGIIK_03625 -0.6 -3.2 Cytochrome C compare
OKGIIK_10590 ispE -0.6 -2.3 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
OKGIIK_16350 cirA -0.6 -5.0 TonB-dependent receptor compare
OKGIIK_00470 -0.6 -2.2 Alanyl-tRNA synthetase compare
OKGIIK_15595 -0.6 -4.8 Phospholipase D family protein compare
OKGIIK_08355 -0.6 -1.4 hypothetical protein compare
OKGIIK_14170 -0.6 -4.3 TolC family protein compare
OKGIIK_14025 mnhF -0.6 -1.8 K+/H+ antiporter subunit F compare
OKGIIK_11255 yjjB -0.6 -2.2 Putative threonine/serine exporter compare
OKGIIK_01065 -0.6 -5.0 S1/P1 Nuclease compare
OKGIIK_17030 fabG -0.6 -2.8 Short chain dehydrogenase compare
OKGIIK_07005 asnB -0.6 -3.5 asparagine synthase B compare
OKGIIK_08735 -0.6 -1.6 hypothetical protein compare
OKGIIK_01205 -0.6 -5.2 Glycosyl transferases group 1 compare
OKGIIK_11135 proC -0.6 -1.9 pyrroline-5-carboxylate reductase compare
OKGIIK_10055 serA -0.6 -2.6 phosphoglycerate dehydrogenase compare
OKGIIK_12705 pta -0.6 -1.4 NADP-dependent malic enzyme compare
OKGIIK_12965 -0.6 -2.6 glutamate--cysteine ligase compare
OKGIIK_07240 flaA1 -0.6 -4.0 polysaccharide biosynthesis protein compare
OKGIIK_11370 -0.6 -1.3 Hemin transporter compare
OKGIIK_11190 -0.6 -1.5 WGR domain-containing protein compare
OKGIIK_01075 -0.6 -4.5 Energy transducer TonB compare
OKGIIK_16060 gpmA -0.6 -1.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_11495 -0.6 -2.6 Glycosyl transferase family 2 compare
OKGIIK_01175 rfbB -0.6 -3.5 dTDP-glucose 4,6-dehydratase compare
OKGIIK_14120 -0.6 -3.9 putative N-acyltransferase compare
OKGIIK_08120 smrA -0.5 -1.5 SMR domain protein compare
OKGIIK_13615 ilvN -0.5 -1.3 acetolactate synthase small subunit compare
OKGIIK_09230 -0.5 -0.9 RecBCD enzyme subunit RecB compare
OKGIIK_14825 -0.5 -1.1 SDR family NAD(P)-dependent oxidoreductase compare
OKGIIK_03065 yqjQ -0.5 -1.9 Short-chain dehydrogenase compare
OKGIIK_11240 -0.5 -1.9 DUF4124 domain-containing protein compare
OKGIIK_01170 rfbA -0.5 -3.4 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_02185 -0.5 -4.4 Penicillin-binding protein 1B compare
OKGIIK_13530 -0.5 -1.6 2-epi-5-epi-valiolone synthase compare
OKGIIK_01160 rfbD -0.5 -1.7 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_02560 yggX -0.5 -2.6 oxidative damage protection protein compare
OKGIIK_09590 rplI -0.5 -1.3 50S ribosomal protein L9 compare
OKGIIK_01185 -0.5 -3.8 Glycosyl transferase compare
OKGIIK_04845 trpB -0.5 -3.0 tryptophan synthase subunit beta compare
OKGIIK_06085 merR -0.5 -2.1 Hg(II)-responsive transcriptional regulator compare
OKGIIK_11735 rsmI -0.5 -1.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
OKGIIK_06095 -0.5 -0.8 (2Fe-2S)-binding protein compare
OKGIIK_15365 aroE -0.5 -2.6 shikimate dehydrogenase compare
OKGIIK_12600 ccmA -0.5 -1.9 multidrug ABC transporter ATP-binding protein compare
OKGIIK_07430 secG -0.5 -1.9 preprotein translocase subunit SecG compare
OKGIIK_16035 -0.5 -2.3 Dolichyl-phosphate mannose synthase compare
OKGIIK_15845 -0.5 -2.2 DUF6776 domain-containing protein compare
OKGIIK_03035 -0.5 -3.8 hypothetical protein compare
OKGIIK_06145 merE -0.5 -0.7 broad-spectrum mercury transporter MerE compare
OKGIIK_04710 -0.5 -3.2 hypothetical protein compare
OKGIIK_03320 -0.5 -1.2 GNAT family N-acetyltransferase compare
OKGIIK_13745 -0.5 -3.8 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_17025 -0.5 -1.2 peptidase S16 compare
OKGIIK_11105 baeS -0.5 -1.5 sensor histidine kinase compare
OKGIIK_10600 -0.5 -3.1 Beta-barrel assembly-enhancing protease compare
OKGIIK_06890 clpA -0.5 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OKGIIK_10270 -0.5 -0.8 DUF615 domain-containing protein compare
OKGIIK_13435 -0.5 -1.9 Damage-inducible protein D compare
OKGIIK_14980 -0.5 -2.1 DUF883 domain-containing protein compare
OKGIIK_01280 -0.5 -3.0 Glyco-trans-2-like domain-containing protein compare
OKGIIK_00880 -0.5 -2.2 Universal stress protein UspA compare
OKGIIK_03795 -0.5 -3.5 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_03335 -0.5 -3.6 Polyketide cyclase compare
OKGIIK_07305 -0.5 -2.7 2OG-FeII-Oxy-4 domain-containing protein compare
OKGIIK_01035 tpx -0.5 -1.8 thiol peroxidase compare
OKGIIK_06090 -0.5 -1.7 hypothetical protein compare
OKGIIK_09780 -0.4 -1.5 Osmotically inducible protein OsmC compare
OKGIIK_00275 -0.4 -1.2 Antitoxin compare
OKGIIK_08285 -0.4 -1.2 RNA signal recognition particle compare
OKGIIK_07725 -0.4 -3.8 Glycosyltransferase compare
OKGIIK_14565 -0.4 -0.6 Lipid A 3-O-deacylase (PagL) compare
OKGIIK_04680 -0.4 -1.9 Electron transporter RnfB compare
OKGIIK_11180 -0.4 -1.8 Shikimate kinase compare
OKGIIK_08045 tig -0.4 -2.0 trigger factor compare
OKGIIK_08940 -0.4 -0.9 DUF4224 domain-containing protein compare
OKGIIK_13425 -0.4 -3.3 DEAD/DEAH box helicase compare
OKGIIK_11335 -0.4 -2.0 efflux transporter periplasmic adaptor subunit compare
OKGIIK_08635 -0.4 -1.0 hypothetical protein compare
OKGIIK_01090 -0.4 -3.6 Porin family protein compare
OKGIIK_11030 -0.4 -3.0 P63C domain-containing protein compare
OKGIIK_11740 -0.4 -3.0 LppC putative lipoprotein compare
OKGIIK_12390 -0.4 -2.0 D-alanyl-D-alanine dipeptidase compare
OKGIIK_15815 -0.4 -4.1 TonB-dependent receptor compare
OKGIIK_01165 rfbC -0.4 -1.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_08770 -0.4 -1.2 hypothetical protein compare
OKGIIK_01445 -0.4 -0.9 hypothetical protein compare
OKGIIK_09875 glpG -0.4 -3.4 DUF1751 domain-containing protein compare
OKGIIK_09975 -0.4 -2.7 Aminoglycoside phosphotransferase compare
OKGIIK_15695 -0.4 -2.3 MFS transporter compare
OKGIIK_13395 queF -0.4 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
OKGIIK_00580 -0.4 -0.8 hypothetical protein compare
OKGIIK_01685 rbsK -0.4 -1.5 carbohydrate kinase compare
OKGIIK_00425 -0.4 -1.8 hypothetical protein compare
OKGIIK_08210 -0.4 -1.9 ATPase compare
OKGIIK_15790 pulE -0.4 -2.5 type II secretion system protein E compare
OKGIIK_13325 trkA -0.4 -2.1 sodium:proton antiporter compare
OKGIIK_12355 nlpC -0.4 -2.3 NlpC-P60 family protein compare
OKGIIK_14885 ompR -0.4 -1.8 DNA-binding response regulator compare
OKGIIK_09850 -0.4 -2.8 DUF502 domain-containing protein compare
OKGIIK_12195 cydX -0.4 -1.0 cytochrome bd-I oxidase subunit CydX compare
OKGIIK_03130 -0.4 -1.2 Arsenate reductase compare
OKGIIK_03430 -0.4 -1.5 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_13065 -0.4 -1.6 hypothetical protein compare
OKGIIK_14495 -0.4 -2.2 DUF2064 domain-containing protein compare
OKGIIK_04630 rhaT -0.4 -1.7 EamA family transporter compare
OKGIIK_03510 mmsB -0.4 -1.6 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase compare
OKGIIK_09620 -0.4 -1.9 hypothetical protein compare
OKGIIK_11440 glyA -0.4 -2.6 serine hydroxymethyltransferase compare
OKGIIK_10775 -0.4 -2.2 hypothetical protein compare
OKGIIK_05360 -0.4 -2.1 ABC transporter domain-containing protein compare
OKGIIK_02625 -0.4 -0.8 Flagellar biosynthesis protein FlgN compare
OKGIIK_08010 -0.4 -2.2 Peptidylprolyl isomerase compare
OKGIIK_01255 fixB -0.4 -2.5 electron transfer flavoprotein subunit alpha compare
OKGIIK_02875 -0.4 -0.9 Flg-hook domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in pH experiments