Experiment set1S33 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES pH 4.25

200 most important genes:

  gene name fitness t score description  
OKGIIK_09550 rplS -2.5 -3.3 50S ribosomal protein L19 compare
OKGIIK_10175 rseP -2.3 -3.7 RIP metalloprotease RseP compare
OKGIIK_15735 23S_rrna -1.8 -3.6 23S ribosomal RNA compare
OKGIIK_13570 thrC -1.6 -3.5 threonine synthase compare
OKGIIK_03310 minC -1.6 -2.2 septum site-determining protein MinC compare
OKGIIK_09380 -1.5 -8.7 FUSC-like domain-containing protein compare
OKGIIK_02315 purM -1.4 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_14090 argD -1.3 -9.2 aspartate aminotransferase family protein compare
OKGIIK_00755 pdhA -1.3 -3.4 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_14345 nagA -1.2 -6.1 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_15615 -1.2 -2.5 Antitermination protein NusB compare
OKGIIK_01845 kup -1.2 -3.4 potassium uptake protein compare
OKGIIK_15650 ftsN -1.2 -3.3 sporulation protein compare
OKGIIK_01195 -1.2 -5.0 ABC transporter, ATP-binding protein compare
OKGIIK_14150 -1.1 -8.6 Alpha/beta hydrolase compare
OKGIIK_00990 -1.1 -2.7 TonB-dependent copper receptor compare
OKGIIK_13855 -1.1 -1.9 Lipid A biosynthesis acyltransferase compare
OKGIIK_09315 feoB -1.1 -9.4 ferrous iron transport protein B compare
OKGIIK_01310 gcvH -1.1 -2.8 glycine cleavage system protein GcvH compare
OKGIIK_14160 -1.1 -5.0 ABC transporter ATP-binding protein compare
OKGIIK_14085 mtnX -1.1 -6.4 phosphatase compare
OKGIIK_07375 smpB -1.1 -1.9 SsrA-binding protein SmpB compare
OKGIIK_16915 rfaB -1.0 -7.8 glycosyl transferase compare
OKGIIK_16330 folK -1.0 -1.6 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_01240 -1.0 -4.9 EamA domain-containing protein compare
OKGIIK_04565 -1.0 -1.5 hypothetical protein compare
OKGIIK_10960 -1.0 -1.4 ABC transporter compare
OKGIIK_09225 -1.0 -3.0 RecBCD enzyme subunit RecC compare
OKGIIK_14180 -1.0 -3.2 DNA-binding response regulator compare
OKGIIK_15520 pgi -1.0 -4.2 glucose-6-phosphate isomerase compare
OKGIIK_12290 pabA -1.0 -4.2 anthranilate/aminodeoxychorismate synthase component II compare
OKGIIK_08915 -1.0 -1.2 hypothetical protein compare
OKGIIK_03000 degQ -1.0 -5.2 peptidase S1 compare
OKGIIK_07040 smc -0.9 -2.3 chromosome segregation protein SMC compare
OKGIIK_09230 -0.9 -2.3 RecBCD enzyme subunit RecB compare
OKGIIK_11965 mscL -0.9 -1.1 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_14110 fabB -0.9 -4.7 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_09430 argH -0.9 -4.1 argininosuccinate lyase compare
OKGIIK_02260 raiA -0.9 -6.4 ribosomal subunit interface protein compare
OKGIIK_01190 -0.9 -2.4 Transport permease protein compare
OKGIIK_09310 -0.9 -2.8 DUF6587 domain-containing protein compare
OKGIIK_10895 -0.8 -4.5 Histidine kinase compare
OKGIIK_14165 lolE -0.8 -6.5 ABC transporter permease compare
OKGIIK_12965 -0.8 -4.1 glutamate--cysteine ligase compare
OKGIIK_14175 -0.8 -6.4 Sensor protein QseC compare
OKGIIK_05570 purF -0.8 -3.2 amidophosphoribosyltransferase compare
OKGIIK_01135 ydcH -0.8 -2.5 DUF465 domain-containing protein compare
OKGIIK_01110 pgk -0.8 -3.9 phosphoglycerate kinase compare
OKGIIK_05430 -0.8 -2.9 Biopolymer transporter ExbD compare
OKGIIK_13440 -0.8 -5.5 type I restriction-modification system subunit M compare
OKGIIK_01080 fba1 -0.8 -5.6 fructose-bisphosphate aldolase class I compare
OKGIIK_07245 -0.8 -3.8 Glycosyl transferase family 4 compare
OKGIIK_01235 -0.8 -6.1 Glycosyl transferases group 1 compare
OKGIIK_00745 aceF -0.8 -1.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_01265 -0.7 -5.7 Glycosyltransferase WbsX compare
OKGIIK_00095 ybeD -0.7 -1.9 DUF493 domain-containing protein compare
OKGIIK_07680 -0.7 -1.7 ATPase P compare
OKGIIK_10980 -0.7 -2.5 DUF4097 domain-containing protein compare
OKGIIK_03625 -0.7 -3.8 Cytochrome C compare
OKGIIK_06650 -0.7 -1.5 DUF2065 domain-containing protein compare
OKGIIK_16075 -0.7 -1.1 Peptidase C13 compare
OKGIIK_06920 aroA -0.7 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_07300 -0.7 -2.1 carbamoyl phosphate synthase small subunit compare
OKGIIK_07255 -0.7 -2.4 LapA-dom domain-containing protein compare
OKGIIK_11845 -0.7 -5.1 Histidine kinase compare
OKGIIK_02625 -0.7 -1.8 Flagellar biosynthesis protein FlgN compare
OKGIIK_01185 -0.7 -5.5 Glycosyl transferase compare
OKGIIK_11105 baeS -0.7 -2.4 sensor histidine kinase compare
OKGIIK_02120 lysA -0.7 -4.9 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_11030 -0.7 -5.4 P63C domain-containing protein compare
OKGIIK_14930 glnK -0.7 -2.2 transcriptional regulator compare
OKGIIK_08285 -0.7 -1.4 RNA signal recognition particle compare
OKGIIK_03445 -0.7 -5.5 hypothetical protein compare
OKGIIK_07900 rpoE -0.7 -3.9 RNA polymerase sigma factor RpoE compare
OKGIIK_06275 -0.7 -1.5 Transcriptional regulator compare
OKGIIK_07005 asnB -0.7 -4.4 asparagine synthase B compare
OKGIIK_02560 yggX -0.7 -3.5 oxidative damage protection protein compare
OKGIIK_01685 rbsK -0.7 -3.0 carbohydrate kinase compare
OKGIIK_01210 gmd -0.7 -5.1 GDP-mannose 4,6-dehydratase compare
OKGIIK_08775 -0.7 -1.9 hypothetical protein compare
OKGIIK_06740 gcvP2 -0.7 -4.4 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_00415 -0.7 -1.8 hypothetical protein compare
OKGIIK_11505 purL -0.7 -2.6 phosphoribosylformylglycinamidine synthase compare
OKGIIK_01155 cpsB -0.6 -2.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_00470 -0.6 -2.4 Alanyl-tRNA synthetase compare
OKGIIK_01170 rfbA -0.6 -4.5 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_08355 -0.6 -1.5 hypothetical protein compare
OKGIIK_10590 ispE -0.6 -2.6 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
OKGIIK_00110 ctpA -0.6 -2.8 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_12320 -0.6 -3.8 AbiEi-3-N domain-containing protein compare
OKGIIK_14170 -0.6 -4.8 TolC family protein compare
OKGIIK_10055 serA -0.6 -2.9 phosphoglycerate dehydrogenase compare
OKGIIK_09995 yajC -0.6 -1.3 preprotein translocase subunit YajC compare
OKGIIK_01125 -0.6 -2.6 DUF4398 domain-containing protein compare
OKGIIK_14940 -0.6 -2.6 undecaprenyl-diphosphate phosphatase compare
OKGIIK_01065 -0.6 -5.2 S1/P1 Nuclease compare
OKGIIK_14155 -0.6 -2.7 Secretion protein HlyD compare
OKGIIK_12705 pta -0.6 -1.7 NADP-dependent malic enzyme compare
OKGIIK_01040 -0.6 -2.2 Preprotein translocase subunit TatC compare
OKGIIK_01075 -0.6 -4.9 Energy transducer TonB compare
OKGIIK_01160 rfbD -0.6 -2.2 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_14040 mnhC -0.6 -1.0 Na+/H+ antiporter subunit C compare
OKGIIK_07240 flaA1 -0.6 -4.3 polysaccharide biosynthesis protein compare
OKGIIK_01095 tkt -0.6 -2.9 transketolase compare
OKGIIK_16350 cirA -0.6 -4.8 TonB-dependent receptor compare
OKGIIK_01225 -0.6 -4.0 glycosyltransferase compare
OKGIIK_14120 -0.6 -4.2 putative N-acyltransferase compare
OKGIIK_01165 rfbC -0.6 -2.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_01205 -0.6 -5.1 Glycosyl transferases group 1 compare
OKGIIK_11520 xerD -0.6 -1.8 site-specific tyrosine recombinase XerD compare
OKGIIK_13445 -0.6 -3.5 Restriction endonuclease subunit S compare
OKGIIK_01035 tpx -0.5 -2.5 thiol peroxidase compare
OKGIIK_02185 -0.5 -4.6 Penicillin-binding protein 1B compare
OKGIIK_01200 -0.5 -3.6 FkbM family methyltransferase compare
OKGIIK_03335 -0.5 -4.6 Polyketide cyclase compare
OKGIIK_13565 thrB -0.5 -1.7 homoserine kinase compare
OKGIIK_14825 -0.5 -0.9 SDR family NAD(P)-dependent oxidoreductase compare
OKGIIK_15365 aroE -0.5 -3.4 shikimate dehydrogenase compare
OKGIIK_03860 -0.5 -3.2 hypothetical protein compare
OKGIIK_11240 -0.5 -2.3 DUF4124 domain-containing protein compare
OKGIIK_04710 -0.5 -3.7 hypothetical protein compare
OKGIIK_11110 ompR -0.5 -3.0 DNA-binding response regulator compare
OKGIIK_13385 lysR -0.5 -2.9 LysR family transcriptional regulator compare
OKGIIK_15595 -0.5 -4.3 Phospholipase D family protein compare
OKGIIK_11740 -0.5 -3.8 LppC putative lipoprotein compare
OKGIIK_13560 thrA -0.5 -2.2 homoserine dehydrogenase compare
OKGIIK_15695 -0.5 -3.1 MFS transporter compare
OKGIIK_11370 -0.5 -1.9 Hemin transporter compare
OKGIIK_10805 abrB -0.5 -0.9 AbrB family transcriptional regulator compare
OKGIIK_01175 rfbB -0.5 -3.6 dTDP-glucose 4,6-dehydratase compare
OKGIIK_08920 -0.5 -1.5 hypothetical protein compare
OKGIIK_10270 -0.5 -1.3 DUF615 domain-containing protein compare
OKGIIK_03030 -0.5 -1.2 DUF3301 domain-containing protein compare
OKGIIK_04845 trpB -0.5 -3.2 tryptophan synthase subunit beta compare
OKGIIK_01780 -0.5 -2.2 NAD+ synthase compare
OKGIIK_11115 fiu -0.5 -1.1 Outer membrane receptor for monomeric catechols compare
OKGIIK_13615 ilvN -0.5 -1.4 acetolactate synthase small subunit compare
OKGIIK_04620 -0.5 -1.6 hypothetical protein compare
OKGIIK_14795 -0.5 -1.6 Conjugal transfer protein TraR compare
OKGIIK_07395 -0.5 -0.7 NfuA family Fe-S biogenesis protein compare
OKGIIK_11010 -0.5 -1.8 Type II secretion system protein N compare
OKGIIK_10845 -0.5 -1.5 Nudix family hydrolase compare
OKGIIK_16035 -0.5 -2.7 Dolichyl-phosphate mannose synthase compare
OKGIIK_14975 -0.5 -3.6 AI-2E family transporter compare
OKGIIK_12405 trpE -0.5 -3.9 anthranilate synthase component I compare
OKGIIK_01280 -0.5 -3.3 Glyco-trans-2-like domain-containing protein compare
OKGIIK_10000 tgt -0.5 -2.5 tRNA guanosine(34) transglycosylase Tgt compare
OKGIIK_13745 -0.5 -3.9 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_15710 oapA -0.5 -2.9 peptidase M23 compare
OKGIIK_12625 -0.5 -0.7 DUF2383 domain-containing protein compare
OKGIIK_04520 -0.5 -1.4 GCN5 family acetyltransferase compare
OKGIIK_13425 -0.5 -3.5 DEAD/DEAH box helicase compare
OKGIIK_03035 -0.5 -3.7 hypothetical protein compare
OKGIIK_03210 -0.4 -2.1 Biotin--protein ligase compare
OKGIIK_11445 ettA -0.4 -2.4 energy-dependent translational throttle protein EttA compare
OKGIIK_03405 -0.4 -3.2 DUF2007 domain-containing protein compare
OKGIIK_07430 secG -0.4 -2.1 preprotein translocase subunit SecG compare
OKGIIK_06890 clpA -0.4 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OKGIIK_12420 pdsR -0.4 -1.6 proteobacterial dedicated sortase system response regulator compare
OKGIIK_06145 merE -0.4 -1.1 broad-spectrum mercury transporter MerE compare
OKGIIK_07725 -0.4 -3.9 Glycosyltransferase compare
OKGIIK_06035 ompR -0.4 -1.7 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
OKGIIK_04120 -0.4 -1.1 DNA-binding protein compare
OKGIIK_15815 -0.4 -4.2 TonB-dependent receptor compare
OKGIIK_11905 ycjD -0.4 -2.2 Very-short-patch-repair endonuclease compare
OKGIIK_17030 fabG -0.4 -2.4 Short chain dehydrogenase compare
OKGIIK_00170 -0.4 -2.2 DUF4433 domain-containing protein compare
OKGIIK_08735 -0.4 -1.4 hypothetical protein compare
OKGIIK_01285 fixX -0.4 -3.0 electron transfer flavoprotein-ubiquinone oxidoreductase compare
OKGIIK_04035 -0.4 -0.8 DeoR/GlpR family DNA-binding transcription regulator compare
OKGIIK_09780 -0.4 -1.2 Osmotically inducible protein OsmC compare
OKGIIK_12600 ccmA -0.4 -1.8 multidrug ABC transporter ATP-binding protein compare
OKGIIK_10600 -0.4 -3.0 Beta-barrel assembly-enhancing protease compare
OKGIIK_05840 rimP -0.4 -0.7 ribosome maturation protein RimP compare
OKGIIK_03795 -0.4 -3.4 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_06085 merR -0.4 -1.9 Hg(II)-responsive transcriptional regulator compare
OKGIIK_03265 -0.4 -1.7 hypothetical protein compare
OKGIIK_08635 -0.4 -1.5 hypothetical protein compare
OKGIIK_16670 -0.4 -2.5 Transporter compare
OKGIIK_07305 -0.4 -2.6 2OG-FeII-Oxy-4 domain-containing protein compare
OKGIIK_14035 phaD -0.4 -2.4 monovalent cation/H+ antiporter subunit D compare
OKGIIK_03065 yqjQ -0.4 -1.9 Short-chain dehydrogenase compare
OKGIIK_11255 yjjB -0.4 -1.5 Putative threonine/serine exporter compare
OKGIIK_14030 mnhE -0.4 -0.5 Na+/H+ antiporter subunit E compare
OKGIIK_08940 -0.4 -1.1 DUF4224 domain-containing protein compare
OKGIIK_03070 marC -0.4 -2.5 YhgN family NAAT transporter compare
OKGIIK_01715 -0.4 -2.8 Histidine kinase compare
OKGIIK_11330 lolD -0.4 -0.8 ABC transporter ATP-binding protein compare
OKGIIK_15065 phhA -0.4 -3.2 phenylalanine 4-monooxygenase compare
OKGIIK_01475 -0.4 -1.4 Response regulatory domain-containing protein compare
OKGIIK_13395 queF -0.4 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
OKGIIK_08210 -0.4 -1.9 ATPase compare
OKGIIK_08995 ppk1 -0.4 -3.2 RNA degradosome polyphosphate kinase compare
OKGIIK_14895 -0.4 -2.0 hypothetical protein compare
OKGIIK_04560 rlmJ -0.4 -2.3 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ compare
OKGIIK_06100 -0.4 -1.2 DUF2282 domain-containing protein compare
OKGIIK_07250 lapB -0.4 -2.6 lipopolysaccharide assembly protein LapB compare
OKGIIK_09875 glpG -0.4 -3.2 DUF1751 domain-containing protein compare
OKGIIK_00275 -0.4 -1.3 Antitoxin compare
OKGIIK_14890 baeS -0.4 -2.0 two-component sensor histidine kinase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in pH experiments