Experiment set1S33 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES pH 4.25

200 most detrimental genes:

  gene name fitness t score description  
OKGIIK_11130 pilT +1.9 14.1 twitching motility protein PilT compare
OKGIIK_10685 rpoE +1.6 11.2 RNA polymerase sigma factor compare
OKGIIK_11995 +1.5 10.3 efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_11990 acrB +1.3 11.6 acriflavine resistance protein B compare
OKGIIK_01295 cysD +1.2 8.9 sulfate adenylyltransferase subunit CysD compare
OKGIIK_01300 +1.0 9.2 Multifunctional fusion protein compare
OKGIIK_12110 +1.0 8.4 ABC transporter compare
OKGIIK_10080 ihfA +0.9 1.7 integration host factor subunit alpha compare
OKGIIK_12125 mlaD +0.9 7.1 outer membrane lipid asymmetry maintenance protein MlaD compare
OKGIIK_12130 mlaE +0.9 4.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_12945 ftsE +0.9 2.5 cell division ATP-binding protein FtsE compare
OKGIIK_01640 +0.9 3.8 Oxidoreductase compare
OKGIIK_16455 bioD +0.9 3.0 dethiobiotin synthase compare
OKGIIK_11235 pssA +0.8 2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_12120 +0.8 6.6 Toluene tolerance protein compare
OKGIIK_12135 mlaF +0.8 5.1 ABC transporter ATP-binding protein compare
OKGIIK_02100 +0.8 4.3 (2Fe-2S)-binding protein compare
OKGIIK_15610 +0.7 4.2 EH domain-containing protein compare
OKGIIK_12755 +0.7 6.4 Tetratricopeptide (TPR) repeat protein compare
OKGIIK_02095 +0.7 5.9 Aldehyde oxidase compare
OKGIIK_12950 +0.7 5.6 ATP-dependent RNA helicase RhlB compare
OKGIIK_16435 +0.7 5.5 Protein-disulfide isomerase compare
OKGIIK_02145 scw11 +0.7 6.2 benzoate transporter compare
OKGIIK_16475 +0.7 4.6 Lipopolysaccharide heptosyltransferase family protein compare
OKGIIK_15585 paaJ +0.7 5.0 acetyl-CoA C-acetyltransferase compare
OKGIIK_08110 pcm +0.7 1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
OKGIIK_13840 tagB +0.7 5.2 CDP-glycerol glycerophosphotransferase compare
OKGIIK_07285 lysR +0.7 5.4 LysR family transcriptional regulator compare
OKGIIK_01950 tadA +0.7 3.5 nucleoside deaminase compare
OKGIIK_00855 +0.7 3.0 Cytochrome B compare
OKGIIK_16300 +0.6 3.2 Cytochrome C compare
OKGIIK_09410 lolD +0.6 1.2 ABC-type lipoprotein export system, ATPase component compare
OKGIIK_05455 +0.6 2.0 hypothetical protein compare
OKGIIK_00525 +0.6 3.6 PEROXIDASE-4 domain-containing protein compare
OKGIIK_03040 +0.6 2.0 hypothetical protein compare
OKGIIK_11035 +0.6 0.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
OKGIIK_16780 +0.6 1.9 hypothetical protein compare
OKGIIK_01625 +0.6 3.9 Hydroxyproline-2-epimerase compare
OKGIIK_09365 +0.6 5.2 Nickel/cobalt transporter regulator compare
OKGIIK_13910 +0.6 2.6 DNA-binding protein compare
OKGIIK_02860 +0.6 2.1 Chemotaxis protein CheW compare
OKGIIK_15350 +0.6 1.6 GCN5 family acetyltransferase compare
OKGIIK_13705 ilvA +0.6 1.9 serine dehydratase compare
OKGIIK_06990 +0.6 0.8 Phosphoglycerate mutase compare
OKGIIK_00530 +0.6 2.1 hypothetical protein compare
OKGIIK_16420 +0.6 2.9 hypothetical protein compare
OKGIIK_05665 slp +0.6 4.6 Outer membrane lipoprotein Slp family compare
OKGIIK_10705 cdd +0.5 3.0 cytidine deaminase compare
OKGIIK_01620 +0.5 4.2 AraC family transcriptional regulator compare
OKGIIK_01650 +0.5 2.7 Ketoglutarate semialdehyde dehydrogenase compare
OKGIIK_04945 hisG +0.5 1.4 ATP phosphoribosyltransferase compare
OKGIIK_10700 pntA +0.5 3.4 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha compare
OKGIIK_08935 +0.5 2.0 hypothetical protein compare
OKGIIK_02770 +0.5 2.8 Flg-hook domain-containing protein compare
OKGIIK_11050 +0.5 4.6 Histidine kinase compare
OKGIIK_13835 +0.5 2.5 hypothetical protein compare
OKGIIK_00515 +0.5 3.9 Phage tail protein compare
OKGIIK_06725 rpoE +0.5 1.6 RNA polymerase subunit sigma-70 compare
OKGIIK_00510 +0.5 2.6 hypothetical protein compare
OKGIIK_09840 trxA +0.5 2.0 thioredoxin compare
OKGIIK_00535 +0.5 3.0 Pvc16-N domain-containing protein compare
OKGIIK_08730 +0.5 1.2 hypothetical protein compare
OKGIIK_01825 +0.5 1.8 AB hydrolase-1 domain-containing protein compare
OKGIIK_07410 +0.5 2.4 Ribonuclease E compare
OKGIIK_02460 +0.5 1.1 Peptidase M4 compare
OKGIIK_16450 msrC +0.5 3.2 diguanylate cyclase compare
OKGIIK_09450 +0.5 1.6 Steroid delta-isomerase compare
OKGIIK_08520 +0.5 1.3 MarR family transcriptional regulator compare
OKGIIK_07755 yIH1 +0.5 1.1 Thymidylate synthase compare
OKGIIK_13415 +0.5 1.6 SseB family protein compare
OKGIIK_11885 +0.5 4.4 FecR domain-containing protein compare
OKGIIK_08905 recT +0.5 1.9 recombination protein RecT compare
OKGIIK_13350 yhbQ +0.5 1.2 GIY-YIG nuclease compare
OKGIIK_02760 fliI +0.5 3.0 flagellar protein export ATPase FliI compare
OKGIIK_03140 +0.5 1.2 Sec-independent protein translocase protein TatA compare
OKGIIK_10715 +0.5 2.3 Exodeoxyribonuclease IX compare
OKGIIK_05875 +0.5 3.1 Poly(3-hydroxyalkanoate) polymerase subunit PhaE compare
OKGIIK_05980 cysG +0.5 2.3 siroheme synthase CysG compare
OKGIIK_05650 ybaB +0.4 2.7 YbaB/EbfC family nucleoid-associated protein compare
OKGIIK_00550 +0.4 2.2 hypothetical protein compare
OKGIIK_14990 +0.4 2.4 DUF883 domain-containing protein compare
OKGIIK_00995 +0.4 1.5 DUF2946 domain-containing protein compare
OKGIIK_01595 +0.4 1.4 Polyisoprenoid-binding protein compare
OKGIIK_03870 Glu_trna +0.4 1.5 tRNA-Glu compare
OKGIIK_14630 soxR +0.4 1.6 heavy metal-responsive transcriptional regulator compare
OKGIIK_00455 +0.4 1.5 Pyridine nucleotide-disulfide oxidoreductase compare
OKGIIK_10990 mazG +0.4 2.5 nucleoside triphosphate pyrophosphohydrolase compare
OKGIIK_03350 +0.4 3.5 ABC transporter compare
OKGIIK_13600 ilvD +0.4 2.4 dihydroxy-acid dehydratase compare
OKGIIK_02690 flgJ +0.4 1.6 flagellar assembly peptidoglycan hydrolase FlgJ compare
OKGIIK_15580 +0.4 2.6 hypothetical protein compare
OKGIIK_03480 msrB +0.4 2.0 peptide-methionine (R)-S-oxide reductase compare
OKGIIK_09500 dksA +0.4 1.2 RNA polymerase-binding protein DksA compare
OKGIIK_16500 +0.4 2.7 Restriction endonuclease compare
OKGIIK_07075 +0.4 1.7 hypothetical protein compare
OKGIIK_08180 yurZ +0.4 1.6 alkylhydroperoxidase compare
OKGIIK_01630 +0.4 3.2 D-amino-acid oxidase compare
OKGIIK_10675 pntB +0.4 2.7 NAD(P) transhydrogenase subunit beta compare
OKGIIK_05955 tauE +0.4 2.9 sulfite exporter TauE/SafE family protein compare
OKGIIK_05615 +0.4 2.0 DUF6165 domain-containing protein compare
OKGIIK_04270 +0.4 1.8 alkyl hydroperoxide reductase compare
OKGIIK_13940 +0.4 2.7 Fatty-acid desaturase compare
OKGIIK_04340 yhfA +0.4 2.0 peroxiredoxin compare
OKGIIK_08725 +0.4 2.5 PBSX family phage terminase large subunit compare
OKGIIK_03550 nlpA +0.4 2.5 methionine ABC transporter substrate-binding protein compare
OKGIIK_01885 ybgF +0.4 2.9 tol-pal system protein YbgF compare
OKGIIK_11605 +0.4 1.5 Acetoin utilization protein compare
OKGIIK_03340 ccmA +0.4 2.0 ABC transporter ATP-binding protein compare
OKGIIK_10615 ppk2 +0.4 2.6 polyphosphate kinase 2 compare
OKGIIK_14055 +0.4 2.5 Sensor protein QseC compare
OKGIIK_02545 +0.4 1.8 hypothetical protein compare
OKGIIK_00905 +0.4 2.2 Electron transporter SenC compare
OKGIIK_11065 ompR +0.4 1.3 two-component system response regulator compare
OKGIIK_04280 +0.4 1.9 hypothetical protein compare
OKGIIK_00540 +0.4 2.6 AAA family ATPase compare
OKGIIK_02035 +0.4 1.4 GCN5 family acetyltransferase compare
OKGIIK_08400 +0.4 1.7 GYD family protein compare
OKGIIK_04785 +0.4 2.4 hypothetical protein compare
OKGIIK_16400 +0.4 3.1 Glycoside hydrolase family 17 compare
OKGIIK_16470 kch +0.4 1.8 glutathione-regulated potassium-efflux system protein KefB compare
OKGIIK_04835 +0.4 1.9 phosphoribosylanthranilate isomerase compare
OKGIIK_02790 fliO +0.4 0.7 flagellar biosynthetic protein FliO compare
OKGIIK_02885 ompR +0.4 2.5 response regulator compare
OKGIIK_03345 +0.4 2.5 ABC transporter permease compare
OKGIIK_01585 yceI +0.4 2.0 polyisoprenoid-binding protein compare
OKGIIK_16380 +0.4 2.0 Carboxypeptidase regulatory-like domain-containing protein compare
OKGIIK_06810 +0.4 2.2 hypothetical protein compare
OKGIIK_03295 +0.4 1.1 hypothetical protein compare
OKGIIK_14015 yjbJ +0.4 1.1 CsbD family protein compare
OKGIIK_04080 +0.4 1.8 DUF2442 domain-containing protein compare
OKGIIK_13280 +0.4 1.3 Acyltransferase compare
OKGIIK_13225 +0.3 1.1 DUF1656 domain-containing protein compare
OKGIIK_02815 flhA +0.3 2.8 flagellar biosynthesis protein FlhA compare
OKGIIK_13870 +0.3 2.2 Ketosteroid isomerase-related protein compare
OKGIIK_13180 eRG3 +0.3 2.4 Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily compare
OKGIIK_01990 yotD +0.3 2.5 rubrerythrin compare
OKGIIK_12760 +0.3 3.3 TonB-dependent receptor compare
OKGIIK_03895 panD +0.3 1.4 aspartate 1-decarboxylase compare
OKGIIK_02520 +0.3 0.9 hypothetical protein compare
OKGIIK_03115 +0.3 2.0 hypothetical protein compare
OKGIIK_12885 +0.3 1.1 hypothetical protein compare
OKGIIK_09440 argB +0.3 2.3 acetylglutamate kinase compare
OKGIIK_16405 +0.3 2.7 EVE domain-containing protein compare
OKGIIK_14260 +0.3 2.3 MBL fold metallo-hydrolase compare
OKGIIK_00935 +0.3 2.5 L-aspartate oxidase compare
OKGIIK_12495 +0.3 1.2 FadR family transcriptional regulator compare
OKGIIK_12890 +0.3 1.9 ATP-binding region, ATPase-like protein compare
OKGIIK_16465 dcp +0.3 2.9 dipeptidyl carboxypeptidase II compare
OKGIIK_04570 +0.3 0.6 hypothetical protein compare
OKGIIK_01645 +0.3 2.2 Dihydrodipicolinate synthase family protein compare
OKGIIK_13175 +0.3 2.6 Alpha/beta hydrolase compare
OKGIIK_00405 tsaA +0.3 1.6 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
OKGIIK_04900 +0.3 2.3 Histidine kinase compare
OKGIIK_10955 tesA +0.3 2.1 Lysophospholipase L1 or related esterase Includes spore coat protein LipC/YcsK compare
OKGIIK_00835 +0.3 2.5 Cytochrome c compare
OKGIIK_13680 +0.3 0.9 Cell surface protein compare
OKGIIK_09820 +0.3 2.8 ABC-trans-aux domain-containing protein compare
OKGIIK_02325 +0.3 1.6 AI-2E family transporter compare
OKGIIK_14680 +0.3 1.5 hypothetical protein compare
OKGIIK_04625 +0.3 1.8 Methyltransferase compare
OKGIIK_06675 +0.3 2.1 Guanosine polyphosphate pyrophosphohydrolase compare
OKGIIK_07840 rlmD +0.3 1.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
OKGIIK_05140 +0.3 1.7 DUF5329 domain-containing protein compare
OKGIIK_12935 pleD +0.3 2.5 response regulator compare
OKGIIK_03380 +0.3 0.9 Arc family DNA binding domain-containing protein compare
OKGIIK_02735 +0.3 1.9 Fis family transcriptional regulator compare
OKGIIK_01320 +0.3 1.5 Protein TonB compare
OKGIIK_06770 +0.3 1.9 Quaternary ammonium compound-resistance protein sugE compare
OKGIIK_04905 +0.3 2.0 DNA-binding response regulator compare
OKGIIK_16390 +0.3 1.7 Epimerase compare
OKGIIK_00090 +0.3 0.6 serine-type D-Ala-D-Ala carboxypeptidase compare
OKGIIK_16770 +0.3 2.2 Heme biosynthesis protein HemY compare
OKGIIK_00715 +0.3 0.9 glyoxalase compare
OKGIIK_05995 gstA +0.3 2.6 glutathione transferase GstA compare
OKGIIK_10655 ansA +0.3 1.5 asparaginase compare
OKGIIK_10540 tuf +0.3 1.1 elongation factor Tu compare
OKGIIK_13140 +0.3 1.0 DUF2249 domain-containing protein compare
OKGIIK_12555 +0.3 2.2 hypothetical protein compare
OKGIIK_13935 +0.3 1.5 Sensory protein compare
OKGIIK_16270 hrpA +0.3 2.4 HrpA-like RNA helicase compare
OKGIIK_12940 ftsX +0.3 2.3 permease-like cell division protein FtsX compare
OKGIIK_13735 tex +0.3 2.0 RNA-binding transcriptional accessory protein compare
OKGIIK_15590 +0.3 1.5 Energy transducer TonB compare
OKGIIK_08445 tolQ +0.3 1.1 biopolymer transporter ExbB compare
OKGIIK_10890 pTR2 +0.3 2.7 MFS transporter compare
OKGIIK_13720 +0.3 1.3 hypothetical protein compare
OKGIIK_16850 rhaT +0.3 2.2 EamA family transporter compare
OKGIIK_00860 +0.3 1.7 DNA-binding response regulator compare
OKGIIK_00815 +0.3 1.3 GNAT family acetyltransferase compare
OKGIIK_02080 fusA +0.3 2.2 elongation factor G compare
OKGIIK_00585 +0.3 2.2 hypothetical protein compare
OKGIIK_15600 +0.3 1.0 Phosphoglycerate mutase compare
OKGIIK_02895 +0.3 2.0 Chemotaxis protein CheW compare
OKGIIK_07335 hrcA +0.3 1.7 heat-inducible transcriptional repressor HrcA compare
OKGIIK_09525 yciI +0.3 0.8 YCII domain-containing protein compare
OKGIIK_12710 +0.3 2.4 hypothetical protein compare
OKGIIK_05975 lysR +0.3 2.2 CysB family transcriptional regulator compare
OKGIIK_00890 +0.3 2.3 Short-chain dehydrogenase compare
OKGIIK_13950 +0.3 2.0 Chromosome partitioning protein ParA compare
OKGIIK_12930 ung +0.3 2.2 uracil-DNA glycosylase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in pH experiments