Experiment set1S33 for Pseudomonas sp. DMC3

Compare to:

D-Glucose and Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
GFF18 -5.5 -3.8 Anthranilate synthase component 2 compare
GFF17 -5.5 -6.5 Anthranilate phosphoribosyltransferase compare
GFF3196 -5.5 -3.8 Phosphoserine phosphatase SerB2 compare
GFF3693 -5.1 -7.0 hypothetical protein compare
GFF1841 -5.1 -6.0 ATP phosphoribosyltransferase compare
GFF20 -5.1 -9.1 Anthranilate synthase component 1 compare
GFF246 -5.0 -6.0 Dihydroxy-acid dehydratase compare
GFF1824 -4.9 -3.4 Phosphocarrier protein NPr compare
GFF785 -4.8 -4.7 3-isopropylmalate dehydratase large subunit compare
GFF264 -4.8 -8.6 Phosphoenolpyruvate-dependent phosphotransferase system compare
GFF4099 -4.8 -8.6 Histidine biosynthesis bifunctional protein HisB compare
GFF16 -4.8 -6.5 Indole-3-glycerol phosphate synthase compare
GFF1604 -4.7 -9.6 putative branched-chain-amino-acid aminotransferase compare
GFF3224 -4.7 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
GFF3103 -4.7 -7.1 Glutamate synthase [NADPH] small chain compare
GFF407 -4.5 -4.4 Acetylglutamate kinase compare
GFF1304 -4.5 -11.1 Transaldolase B compare
GFF793 -4.5 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
GFF4052 -4.3 -8.8 Ketol-acid reductoisomerase (NADP(+)) compare
GFF4081 -4.3 -8.2 DNA-binding transcriptional regulator NtrC compare
GFF3102 -4.3 -15.6 Glutamate synthase [NADPH] large chain compare
GFF798 -4.2 -8.1 Amidophosphoribosyltransferase compare
GFF2051 -4.2 -10.2 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF301 -4.2 -5.8 Amino-acid acetyltransferase compare
GFF359 -4.2 -4.9 Argininosuccinate lyase compare
GFF677 -4.1 -2.9 Tryptophan synthase alpha chain compare
GFF4575 -4.1 -4.0 Molybdenum cofactor guanylyltransferase compare
GFF676 -4.1 -4.0 Tryptophan synthase beta chain compare
GFF5 -4.0 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
GFF5102 -4.0 -14.4 Ornithine carbamoyltransferase 1, anabolic compare
GFF4096 -4.0 -5.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase compare
GFF5246 -4.0 -4.7 Assimilatory nitrite reductase [NAD(P)H] small subunit compare
GFF44 -4.0 -2.7 Multifunctional CCA protein compare
GFF5092 -4.0 -8.0 Argininosuccinate synthase compare
GFF3308 -4.0 -5.4 Bifunctional purine biosynthesis protein PurH compare
GFF5247 -3.9 -14.7 Nitrite reductase [NAD(P)H] compare
GFF1842 -3.9 -11.0 Histidinol dehydrogenase compare
GFF4095 -3.9 -5.2 Imidazole glycerol phosphate synthase subunit HisF compare
GFF507 -3.9 -11.3 2-oxoglutarate carboxylase small subunit compare
GFF1535 -3.8 -7.3 Siroheme synthase compare
GFF4034 -3.8 -5.8 RNA polymerase-binding transcription factor DksA compare
GFF5139 -3.8 -2.6 6-phosphogluconolactonase compare
GFF4098 -3.8 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
GFF788 -3.8 -8.7 3-isopropylmalate dehydrogenase compare
GFF212 -3.7 -10.3 Homoserine O-succinyltransferase compare
GFF2539 -3.7 -6.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
GFF2289 -3.6 -2.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
GFF2677 -3.6 -4.9 Phosphoadenosine phosphosulfate reductase compare
GFF1962 -3.6 -5.5 Phosphoribosylformylglycinamidine synthase compare
GFF4025 -3.6 -4.9 Glucose-6-phosphate isomerase compare
GFF3307 -3.6 -2.5 Phosphoribosylamine--glycine ligase compare
GFF786 -3.6 -5.4 3-isopropylmalate dehydratase small subunit 1 compare
GFF4050 -3.5 -4.2 Acetolactate synthase isozyme 3 large subunit compare
GFF5250 -3.5 -8.1 putative transcriptional regulatory protein pdtaR compare
GFF5245 -3.5 -11.8 Nitrate reductase compare
GFF3692 -3.5 -9.0 Sulfite reductase [ferredoxin] compare
GFF1927 -3.4 -3.5 Molybdopterin synthase catalytic subunit compare
GFF3166 -3.3 -2.3 D-inositol-3-phosphate glycosyltransferase compare
GFF213 -3.3 -8.0 Bifunctional methionine biosynthesis protein MetXA/MetW compare
GFF799 -3.3 -6.3 O-succinylhomoserine sulfhydrylase compare
GFF274 -3.3 -6.1 D-3-phosphoglycerate dehydrogenase compare
GFF171 -3.3 -5.4 5,10-methylenetetrahydrofolate reductase compare
GFF485 -3.2 -3.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
GFF508 -3.2 -11.2 HTH-type transcriptional activator CmpR compare
GFF4818 -3.2 -10.0 GTP pyrophosphokinase compare
GFF2282 -3.1 -2.2 Sulfur carrier protein TusA compare
GFF4080 -3.0 -4.6 Sensory histidine kinase/phosphatase NtrB compare
GFF4489 -2.9 -4.2 Molybdopterin-synthase adenylyltransferase compare
GFF3073 -2.9 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
GFF5249 -2.7 -8.1 Nitrate transporter compare
GFF411 -2.7 -1.9 Orotate phosphoribosyltransferase compare
GFF506 -2.7 -12.3 Oxaloacetate decarboxylase alpha chain compare
GFF1444 -2.7 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4573 -2.7 -8.5 Molybdopterin molybdenumtransferase compare
GFF1925 -2.6 -1.8 Cyclic pyranopterin monophosphate synthase compare
GFF4878 -2.5 -8.6 Arginine N-succinyltransferase subunit alpha compare
GFF4574 -2.5 -2.9 Molybdenum cofactor biosynthesis protein B compare
GFF4914 -2.4 -1.7 RecBCD enzyme subunit RecD compare
GFF4287 -2.4 -7.8 hypothetical protein compare
GFF4332 -2.3 -5.9 2-isopropylmalate synthase compare
GFF5243 -2.3 -4.8 Outer membrane porin F compare
GFF1849 -2.3 -10.3 Bifunctional enzyme CysN/CysC compare
GFF4030 -2.3 -5.6 Transcriptional regulatory protein ZraR compare
GFF4148 -2.3 -8.4 Inner membrane protein YgaZ compare
GFF1848 -2.2 -8.9 Sulfate adenylyltransferase subunit 2 compare
GFF3072 -2.1 -4.7 Phosphoribosyl-ATP pyrophosphatase compare
GFF4913 -2.1 -3.9 RecBCD enzyme subunit RecB compare
GFF3169 -2.1 -5.7 hypothetical protein compare
GFF4051 -2.1 -7.5 Acetolactate synthase isozyme 3 small subunit compare
GFF4147 -2.0 -4.3 hypothetical protein compare
GFF2161 -1.9 -2.9 ATP-dependent DNA helicase DinG compare
GFF2538 -1.9 -6.1 Phosphoribosylglycinamide formyltransferase compare
GFF5152 -1.9 -8.6 Phosphogluconate dehydratase compare
GFF418 -1.9 -2.2 DNA-directed RNA polymerase subunit omega compare
GFF1831 -1.9 -2.8 Lipopolysaccharide export system protein LptC compare
GFF5140 -1.9 -6.9 Glucose-6-phosphate 1-dehydrogenase compare
GFF4394 -1.8 -2.7 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
GFF2454 -1.8 -8.1 STAS-domain containing protein compare
GFF266 -1.8 -8.6 putative phosphatase compare
GFF4820 -1.7 -5.4 Cysteine synthase B compare
GFF582 -1.7 -2.2 hypothetical protein compare
GFF4186 -1.7 -4.0 Glutamate--cysteine ligase compare
GFF4617 -1.6 -7.4 HTH-type transcriptional regulator CysB compare
GFF4027 -1.6 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
GFF1633 -1.6 -2.6 hypothetical protein compare
GFF4103 -1.6 -2.3 putative Fe(2+)-trafficking protein compare
GFF1943 -1.5 -3.0 hypothetical protein compare
GFF4427 -1.5 -2.4 Transcriptional regulator MraZ compare
GFF3747 -1.5 -2.1 Bifunctional ligase/repressor BirA compare
GFF4978 -1.5 -2.7 Transcription elongation factor GreA compare
GFF1651 -1.5 -4.3 Sensor histidine kinase RcsC compare
GFF773 -1.5 -7.3 Aromatic-amino-acid aminotransferase compare
GFF3229 -1.5 -4.8 Ribonuclease R compare
GFF5244 -1.4 -6.0 Uroporphyrinogen-III C-methyltransferase compare
GFF4373 -1.4 -1.8 hypothetical protein compare
GFF4912 -1.4 -5.5 RecBCD enzyme subunit RecC compare
GFF2471 -1.4 -2.7 Flagellum site-determining protein YlxH compare
GFF2295 -1.4 -1.5 hypothetical protein compare
GFF4512 -1.4 -1.7 hypothetical protein compare
GFF1275 -1.3 -6.5 hypothetical protein compare
GFF335 -1.3 -4.3 Exopolyphosphatase compare
GFF5214 -1.3 -2.1 hypothetical protein compare
GFF4660 -1.3 -4.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
GFF1813 -1.3 -3.3 Ribonuclease G compare
GFF3130 -1.3 -2.7 hypothetical protein compare
GFF2945 -1.3 -6.0 UTP--glucose-1-phosphate uridylyltransferase compare
GFF2719 -1.3 -2.3 putative oxidoreductase compare
GFF2248 -1.3 -1.7 hypothetical protein compare
GFF5192 -1.3 -4.0 hypothetical protein compare
GFF4126 -1.3 -4.2 ATP-dependent zinc metalloprotease FtsH compare
GFF4671 -1.3 -2.0 Integration host factor subunit beta compare
GFF2115 -1.2 -2.5 hypothetical protein compare
GFF1417 -1.2 -2.2 hypothetical protein compare
GFF1443 -1.2 -3.3 ATP-dependent Clp protease proteolytic subunit compare
GFF268 -1.2 -7.6 L-threonine dehydratase biosynthetic IlvA compare
GFF5251 -1.2 -3.8 Nitrate/nitrite binding protein NrtA compare
GFF2356 -1.2 -2.1 hypothetical protein compare
GFF2957 -1.2 -5.3 Molybdate-binding protein ModA compare
GFF5184 -1.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF2736 -1.2 -2.1 Protein FecR compare
GFF2091 -1.2 -1.3 hypothetical protein compare
GFF2287 -1.2 -4.2 Outer membrane protein assembly factor BamC compare
GFF4507 -1.2 -2.6 hypothetical protein compare
GFF3902 -1.2 -3.8 hypothetical protein compare
GFF3171 -1.2 -1.5 D-inositol-3-phosphate glycosyltransferase compare
GFF4691 -1.1 -2.7 DNA-binding transcriptional regulator BolA compare
GFF3687 -1.1 -5.6 Methionine synthase compare
GFF713 -1.1 -5.3 Oxygen-independent coproporphyrinogen III oxidase compare
GFF420 -1.1 -3.1 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF5089 -1.1 -2.1 hypothetical protein compare
GFF1169 -1.1 -1.3 hypothetical protein compare
GFF4796 -1.1 -2.3 hypothetical protein compare
GFF3092 -1.1 -5.7 NADP-dependent malic enzyme compare
GFF2012 -1.1 -3.2 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF5186 -1.0 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
GFF4443 -1.0 -3.5 Cell division protein ZapE compare
GFF3082 -1.0 -3.5 3-oxoadipate enol-lactonase 2 compare
GFF4091 -1.0 -3.8 Carboxy-terminal processing protease CtpB compare
GFF2528 -1.0 -1.1 hypothetical protein compare
GFF427 -1.0 -3.0 ATP-dependent DNA helicase RecG compare
GFF673 -0.9 -2.5 Dodecin compare
GFF4565 -0.9 -1.7 Pyrimidine/purine nucleoside phosphorylase compare
GFF1195 -0.9 -2.7 hypothetical protein compare
GFF2795 -0.9 -1.7 hypothetical protein compare
GFF590 -0.9 -2.7 Ribosomal RNA small subunit methyltransferase B compare
GFF39 -0.9 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF2958 -0.9 -4.0 Molybdenum transport system permease protein ModB compare
GFF1276 -0.9 -2.7 hypothetical protein compare
GFF660 -0.9 -1.9 hypothetical protein compare
GFF2568 -0.9 -2.4 hypothetical protein compare
GFF4759 -0.9 -3.2 Phosphate acyltransferase compare
GFF5264 -0.9 -3.2 hypothetical protein compare
GFF336 -0.9 -6.3 Polyphosphate kinase compare
GFF1445 -0.9 -4.0 Lon protease compare
GFF201 -0.8 -1.7 hypothetical protein compare
GFF3021 -0.8 -1.7 hypothetical protein compare
GFF2563 -0.8 -1.9 hypothetical protein compare
GFF4877 -0.8 -2.9 Arginine N-succinyltransferase subunit beta compare
GFF5063 -0.8 -5.0 hypothetical protein compare
GFF3993 -0.8 -2.4 hypothetical protein compare
GFF3120 -0.8 -1.0 hypothetical protein compare
GFF4031 -0.8 -5.9 Adaptive-response sensory-kinase SasA compare
GFF3802 -0.8 -2.3 HTH-type transcriptional activator RhaS compare
GFF4493 -0.8 -3.6 Beta-barrel assembly-enhancing protease compare
GFF4265 -0.8 -1.5 hypothetical protein compare
GFF1670 -0.8 -3.2 hypothetical protein compare
GFF3356 -0.8 -3.4 Copper-exporting P-type ATPase compare
GFF320 -0.8 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
GFF2342 -0.8 -1.8 Beta-ketodecanoyl-[acyl-carrier-protein] synthase compare
GFF4359 -0.8 -2.6 Queuine tRNA-ribosyltransferase compare
GFF3045 -0.8 -1.7 HTH-type transcriptional repressor NanR compare
GFF3619 -0.8 -2.2 hypothetical protein compare
GFF2045 -0.8 -2.3 Sulfur acceptor protein CsdE compare
GFF374 -0.8 -3.5 Ammonia channel compare
GFF3306 -0.8 -4.4 Sensor histidine kinase RcsC compare
GFF4250 -0.8 -2.2 hypothetical protein compare
GFF991 -0.7 -1.7 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
GFF1342 -0.7 -3.0 hypothetical protein compare
GFF4708 -0.7 -1.5 hypothetical protein compare
GFF5150 -0.7 -1.0 Transcriptional regulatory protein OmpR compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source D-Glucose across organisms