Experiment set1S33 for Azospirillum sp. SherDot2

Compare to:

NL-CCM, start OD=0.3

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_04449 +1.9 3.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_02937 +1.4 2.9 hypothetical protein compare
MPMX19_01978 +1.2 2.9 hypothetical protein compare
MPMX19_02543 +1.1 2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00166 +1.1 2.0 hypothetical protein compare
MPMX19_02136 +1.0 1.1 Phage shock protein A compare
MPMX19_03491 +0.9 2.6 putative FAD-linked oxidoreductase compare
MPMX19_02063 +0.9 3.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04531 +0.9 3.0 hypothetical protein compare
MPMX19_06610 +0.8 1.7 hypothetical protein compare
MPMX19_04392 +0.8 2.2 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_03916 +0.8 2.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_00649 +0.8 3.0 Phosphoadenosine phosphosulfate reductase compare
MPMX19_03846 +0.8 2.2 hypothetical protein compare
MPMX19_06197 +0.8 1.5 hypothetical protein compare
MPMX19_06914 +0.8 2.2 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_03868 +0.8 2.2 Xylitol-binding protein compare
MPMX19_06785 +0.8 1.4 L-idonate 5-dehydrogenase (NAD(P)(+)) compare
MPMX19_04145 +0.8 1.5 hypothetical protein compare
MPMX19_05505 +0.7 1.6 Leucine-responsive regulatory protein compare
MPMX19_00268 +0.7 1.7 Transcriptional regulatory protein OmpR compare
MPMX19_05483 +0.7 2.4 hypothetical protein compare
MPMX19_01190 +0.7 2.4 Response regulator receiver protein CpdR compare
MPMX19_00025 +0.7 1.2 hypothetical protein compare
MPMX19_06221 +0.7 3.1 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_06419 +0.7 1.7 IS110 family transposase ISHne3 compare
MPMX19_06989 +0.7 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04563 +0.7 1.4 hypothetical protein compare
MPMX19_04408 +0.7 1.8 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
MPMX19_00334 +0.7 1.4 hypothetical protein compare
MPMX19_00878 +0.7 2.9 Guanidinium exporter compare
MPMX19_05314 +0.7 1.8 hypothetical protein compare
MPMX19_06084 +0.7 2.5 Transcriptional regulatory protein LnrK compare
MPMX19_04669 +0.6 1.7 Glucose 1-dehydrogenase compare
MPMX19_05067 +0.6 1.7 hypothetical protein compare
MPMX19_00822 +0.6 3.6 Divalent metal cation transporter MntH compare
MPMX19_04968 +0.6 1.2 hypothetical protein compare
MPMX19_00478 +0.6 1.5 putative protein RP812 compare
MPMX19_02801 +0.6 1.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03262 +0.6 1.5 putative HTH-type transcriptional repressor ExuR compare
MPMX19_00414 +0.6 1.5 Pyruvate dehydrogenase complex repressor compare
MPMX19_05195 +0.6 2.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03340 +0.6 1.4 hypothetical protein compare
MPMX19_00008 +0.6 1.6 hypothetical protein compare
MPMX19_04513 +0.6 2.7 Adaptive-response sensory-kinase SasA compare
MPMX19_06862 +0.6 1.7 hypothetical protein compare
MPMX19_04095 +0.6 2.2 hypothetical protein compare
MPMX19_02295 +0.6 3.2 Periplasmic nitrate reductase, electron transfer subunit compare
MPMX19_06492 +0.6 2.5 IS5 family transposase ISAzs10 compare
MPMX19_03989 +0.6 3.0 Phosphate starvation-inducible protein PsiF compare
MPMX19_02116 +0.6 1.6 Cold shock protein CspA compare
MPMX19_05534 +0.6 1.4 DNA gyrase inhibitor YacG compare
MPMX19_06506 +0.6 1.7 hypothetical protein compare
MPMX19_00244 +0.6 2.1 hypothetical protein compare
MPMX19_03001 +0.6 1.8 Ribulokinase compare
MPMX19_03811 +0.6 2.3 hypothetical protein compare
MPMX19_00295 +0.6 2.9 Transcriptional regulatory protein QseB compare
MPMX19_06385 +0.6 2.1 hypothetical protein compare
MPMX19_05034 +0.6 1.7 ATP synthase subunit c compare
MPMX19_01401 +0.6 1.3 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_06888 +0.6 1.6 hypothetical protein compare
MPMX19_06648 +0.6 2.4 hypothetical protein compare
MPMX19_02318 +0.6 1.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_05152 +0.6 1.6 Phosphonoacetaldehyde hydrolase compare
MPMX19_00719 +0.6 2.4 Protein ElaA compare
MPMX19_04033 +0.6 3.1 Colistin resistance protein EmrA compare
MPMX19_06196 +0.5 2.8 Flagellum-specific ATP synthase compare
MPMX19_05581 +0.5 0.9 hypothetical protein compare
MPMX19_03756 +0.5 1.3 hypothetical protein compare
MPMX19_00267 +0.5 2.1 hypothetical protein compare
MPMX19_05773 +0.5 1.8 Putative 1,2-phenylacetyl-CoA epoxidase, subunit D compare
MPMX19_05559 +0.5 2.9 hypothetical protein compare
MPMX19_05269 +0.5 2.1 hypothetical protein compare
MPMX19_05605 +0.5 1.8 hypothetical protein compare
MPMX19_01426 +0.5 1.0 hypothetical protein compare
MPMX19_02687 +0.5 2.5 hypothetical protein compare
MPMX19_03342 +0.5 1.2 hypothetical protein compare
MPMX19_02735 +0.5 1.2 Sensor histidine kinase RcsC compare
MPMX19_01385 +0.5 2.1 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_03897 +0.5 1.4 hypothetical protein compare
MPMX19_04633 +0.5 1.7 hypothetical protein compare
MPMX19_05936 +0.5 1.6 Alpha-galactosidase compare
MPMX19_04786 +0.5 2.7 Thymidylate kinase compare
MPMX19_01271 +0.5 1.3 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_02865 +0.5 1.9 hypothetical protein compare
MPMX19_03538 +0.5 1.7 HTH-type transcriptional repressor NagR compare
MPMX19_01653 +0.5 2.5 Serine acetyltransferase compare
MPMX19_04192 +0.5 2.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX19_02536 +0.5 1.6 hypothetical protein compare
MPMX19_03109 +0.5 1.6 hypothetical protein compare
MPMX19_04508 +0.5 1.6 Phosphoglycolate phosphatase compare
MPMX19_06483 +0.5 2.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_03296 +0.5 2.2 L-carnitine dehydrogenase compare
MPMX19_05076 +0.5 2.0 Carboxymethylenebutenolidase compare
MPMX19_06306 +0.5 1.7 hypothetical protein compare
MPMX19_06478 +0.5 1.9 hypothetical protein compare
MPMX19_06009 +0.5 1.4 hypothetical protein compare
MPMX19_04458 +0.5 1.2 2-hydroxy-3-oxopropionate reductase compare
MPMX19_06887 +0.5 1.4 Adenine deaminase compare
MPMX19_05658 +0.5 1.2 hypothetical protein compare
MPMX19_03888 +0.5 3.1 Glutathione hydrolase-like YwrD proenzyme compare
MPMX19_05831 +0.5 1.5 Protein/nucleic acid deglycase 2 compare
MPMX19_02828 +0.5 2.1 Glutathione import ATP-binding protein GsiA compare
MPMX19_05472 +0.5 1.4 hypothetical protein compare
MPMX19_00978 +0.5 1.4 hypothetical protein compare
MPMX19_03786 +0.5 1.3 hypothetical protein compare
MPMX19_04118 +0.5 1.4 Sensor histidine kinase RcsC compare
MPMX19_04768 +0.5 2.6 Apulose-4-phosphate transketolase subunit A compare
MPMX19_05202 +0.5 1.8 Tryptophan synthase beta chain compare
MPMX19_05022 +0.5 2.5 hypothetical protein compare
MPMX19_06948 +0.5 2.1 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_02217 +0.5 2.0 Pseudouridine-5'-phosphate glycosidase compare
MPMX19_06870 +0.5 2.4 Riboflavin biosynthesis protein RibBA compare
MPMX19_04518 +0.5 1.8 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_02123 +0.5 1.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MPMX19_00234 +0.5 1.5 hypothetical protein compare
MPMX19_01565 +0.5 1.1 hypothetical protein compare
MPMX19_04726 +0.5 1.4 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06777 +0.5 1.2 hypothetical protein compare
MPMX19_03100 +0.5 1.8 hypothetical protein compare
MPMX19_04707 +0.5 1.7 hypothetical protein compare
MPMX19_00817 +0.5 3.3 Penicillin-binding protein 1C compare
MPMX19_03883 +0.4 1.7 hypothetical protein compare
MPMX19_03465 +0.4 1.9 Acetyl-CoA acetyltransferase compare
MPMX19_05850 +0.4 1.1 hypothetical protein compare
MPMX19_02127 +0.4 2.6 hypothetical protein compare
MPMX19_03884 +0.4 1.7 hypothetical protein compare
MPMX19_05430 +0.4 1.0 HTH-type transcriptional regulator DmlR compare
MPMX19_05362 +0.4 1.1 hypothetical protein compare
MPMX19_01755 +0.4 1.1 hypothetical protein compare
MPMX19_04914 +0.4 2.2 hypothetical protein compare
MPMX19_04088 +0.4 1.9 Signal recognition particle 54 kDa protein compare
MPMX19_06467 +0.4 1.8 hypothetical protein compare
MPMX19_02309 +0.4 1.9 hypothetical protein compare
MPMX19_05160 +0.4 2.0 hypothetical protein compare
MPMX19_01394 +0.4 0.7 hypothetical protein compare
MPMX19_02091 +0.4 1.5 hypothetical protein compare
MPMX19_04791 +0.4 1.2 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_04792 +0.4 1.5 hypothetical protein compare
MPMX19_00256 +0.4 1.8 hypothetical protein compare
MPMX19_06144 +0.4 1.2 hypothetical protein compare
MPMX19_05207 +0.4 0.7 Hemolysin secretion protein D, plasmid compare
MPMX19_05005 +0.4 1.3 hypothetical protein compare
MPMX19_06885 +0.4 1.0 Nitrate import ATP-binding protein NrtD compare
MPMX19_05187 +0.4 2.3 3-mercaptopropionate dioxygenase compare
MPMX19_04120 +0.4 1.2 hypothetical protein compare
MPMX19_02999 +0.4 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02092 +0.4 1.4 hypothetical protein compare
MPMX19_00062 +0.4 1.5 Glycerophosphodiester phosphodiesterase, cytoplasmic compare
MPMX19_06193 +0.4 0.9 Flagellar hook-basal body complex protein FliE compare
MPMX19_01624 +0.4 2.0 hypothetical protein compare
MPMX19_05322 +0.4 2.3 hypothetical protein compare
MPMX19_03314 +0.4 1.7 2-keto-3-deoxy-L-fuconate dehydrogenase compare
MPMX19_04963 +0.4 0.9 Cysteine desulfurase IscS compare
MPMX19_02802 +0.4 2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06569 +0.4 1.3 hypothetical protein compare
MPMX19_03915 +0.4 1.3 hypothetical protein compare
MPMX19_03090 +0.4 2.4 Macrolide export ATP-binding/permease protein MacB compare
MPMX19_04226 +0.4 1.6 hypothetical protein compare
MPMX19_03473 +0.4 1.7 hypothetical protein compare
MPMX19_03816 +0.4 1.0 hypothetical protein compare
MPMX19_04638 +0.4 0.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_02046 +0.4 2.8 Sensor histidine kinase RcsC compare
MPMX19_02206 +0.4 2.5 hypothetical protein compare
MPMX19_06923 +0.4 1.3 hypothetical protein compare
MPMX19_06332 +0.4 1.8 hypothetical protein compare
MPMX19_04760 +0.4 1.6 Sialic acid TRAP transporter large permease protein SiaM compare
MPMX19_03485 +0.4 1.8 (S)-mandelate dehydrogenase compare
MPMX19_02548 +0.4 2.0 ATP-dependent protease subunit HslV compare
MPMX19_05621 +0.4 2.2 ABC transporter ATP-binding protein NatA compare
MPMX19_03939 +0.4 1.0 Enoyl-CoA-hydratase compare
MPMX19_03076 +0.4 1.8 hypothetical protein compare
MPMX19_06243 +0.4 1.8 HTH-type transcriptional regulator PgrR compare
MPMX19_01559 +0.4 1.4 hypothetical protein compare
MPMX19_05031 +0.4 2.0 ATP synthase gamma chain compare
MPMX19_02337 +0.4 2.2 Nopaline-binding periplasmic protein compare
MPMX19_06465 +0.4 1.6 hypothetical protein compare
MPMX19_00815 +0.4 2.5 hypothetical protein compare
MPMX19_03069 +0.4 1.0 hypothetical protein compare
MPMX19_05762 +0.4 1.0 hypothetical protein compare
MPMX19_05328 +0.4 1.2 hypothetical protein compare
MPMX19_01521 +0.4 1.8 hypothetical protein compare
MPMX19_06384 +0.4 2.9 Cadmium, cobalt and zinc/H(+)-K(+) antiporter compare
MPMX19_03933 +0.4 1.8 hypothetical protein compare
MPMX19_06770 +0.4 1.7 NAD-dependent glycerol dehydrogenase compare
MPMX19_06028 +0.4 1.3 hypothetical protein compare
MPMX19_03425 +0.4 0.9 hypothetical protein compare
MPMX19_05862 +0.4 1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_02279 +0.4 1.1 hypothetical protein compare
MPMX19_05911 +0.4 1.4 hypothetical protein compare
MPMX19_02353 +0.4 1.4 hypothetical protein compare
MPMX19_03824 +0.4 2.4 hypothetical protein compare
MPMX19_05989 +0.4 1.2 HTH-type transcriptional regulator HdfR compare
MPMX19_00541 +0.4 2.2 Tungstate uptake system permease protein TupB compare
MPMX19_05853 +0.4 1.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04136 +0.4 2.0 sn-glycerol-3-phosphate import ATP-binding protein UgpC compare
MPMX19_01393 +0.4 1.4 hypothetical protein compare
MPMX19_03111 +0.4 2.1 Putative fatty-acid--CoA ligase FadD21 compare
MPMX19_06903 +0.4 2.0 Acetolactate synthase isozyme 2 large subunit compare
MPMX19_05292 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm experiments