Experiment set1S324 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_Others16 rep C; time point 2

200 most detrimental genes:

  gene name fitness t score description  
GFF4521 +3.0 26.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF926 +1.1 2.0 MaoC family protein compare
GFF5696 +1.0 2.0 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF1913 +1.0 3.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF5783 +0.9 5.0 Mobile element protein compare
GFF1336 +0.8 4.9 Type IV pilus biogenesis protein PilN compare
GFF3652 +0.8 2.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
GFF1335 +0.8 6.0 Type IV pilus biogenesis protein PilO compare
GFF3651 +0.8 1.6 Serine acetyltransferase (EC 2.3.1.30) compare
GFF714 +0.8 1.4 hypothetical protein compare
GFF1333 +0.8 5.6 Type IV pilus biogenesis protein PilQ compare
GFF738 +0.8 5.4 Autolysis response regulater LytR compare
GFF308 +0.8 2.5 hypothetical protein compare
GFF1617 +0.8 1.5 hypothetical protein compare
GFF4042 +0.7 3.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF5121 +0.7 3.4 Benzoate transport, ATPase component compare
GFF2787 +0.7 1.5 Putative periplasmic protein compare
GFF240 +0.7 2.1 SlyX protein compare
GFF5489 +0.7 1.8 TPR domain protein, putative component of TonB system compare
GFF2209 +0.7 1.4 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) compare
GFF5396 +0.7 2.4 amino acid ABC transporter, periplasmic substrate-binding protein compare
GFF1821 +0.7 1.6 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF4023 +0.7 1.6 PUTATIVE METHYLTRANSFERASE compare
GFF1924 +0.7 1.5 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
GFF2867 +0.7 1.5 hypothetical protein compare
GFF1389 +0.7 0.8 General secretion pathway protein N compare
GFF1577 +0.6 1.3 YciL protein compare
GFF1071 +0.6 1.8 hypothetical protein compare
GFF2877 +0.6 1.5 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
GFF831 +0.6 3.3 Heat-inducible transcription repressor HrcA compare
GFF1706 +0.6 1.1 YbaK/prolyl-tRNA synthetase associated region compare
GFF3171 +0.6 2.0 hypothetical protein compare
GFF80 +0.6 1.5 MotA/TolQ/ExbB proton channel family protein compare
GFF5467 +0.6 1.1 hypothetical protein compare
GFF2927 +0.6 1.5 hypothetical protein compare
GFF253 +0.6 1.7 cytochrome c subunit of flavocytochrome c sulfide dehydrogenase compare
GFF1194 +0.6 1.0 Formate dehydrogenase subunit or accessory protein compare
GFF5323 +0.6 1.0 hypothetical protein compare
GFF5367 +0.6 1.3 3-demethylubiquinone-9 3-methyltransferase compare
GFF468 +0.6 1.6 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
GFF3560 +0.6 1.6 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
GFF2896 +0.6 1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF5130 +0.6 1.3 Tricarboxylate transport transcriptional regulator TctD compare
GFF3978 +0.6 1.1 Periplasmic binding protein compare
GFF5715 +0.6 1.8 Urea carboxylase-related ABC transporter, ATPase protein compare
GFF4644 +0.6 2.0 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
GFF3232 +0.6 1.1 hypothetical protein compare
GFF4435 +0.5 1.0 Conjugative transfer protein TrbB compare
GFF2558 +0.5 1.6 hypothetical protein compare
GFF195 +0.5 3.1 Oxidoreductase, Gfo/Idh/MocA family compare
GFF2671 +0.5 1.5 hypothetical protein compare
GFF438 +0.5 2.9 PROBABLE ANTIBIOTIC-RESISTANCE PROTEIN compare
GFF1337 +0.5 4.0 Type IV pilus biogenesis protein PilM compare
GFF461 +0.5 1.7 Transcriptional regulator, LysR family compare
GFF61 +0.5 1.4 hypothetical protein compare
GFF2039 +0.5 3.2 hypothetical protein compare
GFF3072 +0.5 1.1 hypothetical protein compare
GFF1944 +0.5 1.9 Cyanate hydratase (EC 4.2.1.104) compare
GFF2428 +0.5 1.5 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF2739 +0.5 1.0 lipoprotein, putative compare
GFF3176 +0.5 1.2 Mobile element protein compare
GFF343 +0.5 2.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF4165 +0.5 1.4 Glycosidases compare
GFF5705 +0.5 4.1 Transcriptional regulator, GntR family compare
GFF1874 +0.5 2.1 Mannose-6-phosphate isomerase compare
GFF2143 +0.5 1.2 ABC transporter substrate-binding protein compare
GFF796 +0.5 1.0 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF519 +0.5 2.1 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
GFF917 +0.5 1.3 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
GFF5003 +0.5 0.6 Adenylate cyclase (EC 4.6.1.1) compare
GFF4974 +0.5 1.0 hypothetical protein compare
GFF1144 +0.5 0.7 putative periplasmic protein kinase ArgK and related GTPases of G3E family compare
GFF209 +0.5 2.0 Hypothetical protein with Rieske (2Fe-2S) region compare
GFF1236 +0.5 2.8 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
GFF261 +0.5 2.0 Sulfur oxidation protein SoxZ compare
GFF2563 +0.5 1.5 hypothetical protein compare
GFF1232 +0.5 1.2 hypothetical protein compare
GFF4831 +0.5 1.7 Transcriptional regulator, AraC family compare
GFF2158 +0.5 1.8 Transcriptional regulator, LysR family compare
GFF5750 +0.5 1.7 Zinc ABC transporter, inner membrane permease protein ZnuB compare
GFF5833 +0.5 2.0 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) compare
GFF4180 +0.5 1.3 Conjugative transfer protein TrbJ compare
GFF3485 +0.5 1.3 Plasmid replication initiator protein compare
GFF3518 +0.5 1.2 Putative outer membrane lipoprotein compare
GFF1556 +0.5 1.1 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
GFF4533 +0.5 2.3 hypothetical protein compare
GFF342 +0.5 2.3 transcriptional regulator, Crp/Fnr family compare
GFF5140 +0.5 2.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
GFF2139 +0.5 0.9 transcriptional regulator, LysR family compare
GFF422 +0.5 1.6 putative Metapyrocatechase (MPC) (CatO2ase) (Catechol 2,3- dioxygenase)( EC:1.13.11.2 ) compare
GFF3151 +0.5 0.8 hypothetical protein compare
GFF4784 +0.5 1.7 Phospholipid N-methyltransferase compare
GFF52 +0.5 2.0 hypothetical protein compare
GFF2705 +0.5 1.7 hypothetical protein compare
GFF1560 +0.5 1.8 Fumarylacetoacetate hydrolase family protein compare
GFF482 +0.5 0.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF4163 +0.5 1.1 Chromosome (plasmid) partitioning protein ParA compare
GFF1494 +0.5 1.4 Transcriptional regulator, LysR family compare
GFF1830 +0.5 1.7 Homoprotocatechuate degradative operon repressor compare
GFF5647 +0.4 2.2 Transcriptional regulator, TetR family compare
GFF462 +0.4 1.9 FIG074102: hypothetical protein compare
GFF92 +0.4 1.5 hypothetical protein compare
GFF323 +0.4 1.6 Probable sulfite reductase compare
GFF5414 +0.4 1.1 Cytochrome c551 NirM compare
GFF4970 +0.4 1.6 DNA-binding response regulator, LuxR family compare
GFF4459 +0.4 0.9 Serine-protein kinase RsbW (EC 2.7.11.1) compare
GFF202 +0.4 1.0 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
GFF5621 +0.4 1.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
GFF1531 +0.4 0.8 putative exported protein compare
GFF2176 +0.4 1.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3402 +0.4 0.7 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF3100 +0.4 1.5 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
GFF5432 +0.4 1.7 ABC transporter, solute-binding protein compare
GFF4641 +0.4 1.1 Cobalt-precorrin-6 synthase, anaerobic compare
GFF3738 +0.4 0.9 hypothetical protein compare
GFF260 +0.4 1.3 Sulfur oxidation protein SoxY compare
GFF3428 +0.4 1.2 Ferredoxin compare
GFF471 +0.4 1.5 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
GFF1609 +0.4 1.2 Regulator of competence-specific genes compare
GFF537 +0.4 1.7 Metallo-beta-lactamase family protein compare
GFF1153 +0.4 0.7 Transcriptional regulator, LysR family compare
GFF2902 +0.4 1.5 Tricarboxylate transport protein TctC compare
GFF1027 +0.4 1.3 Ferredoxin, 2Fe-2S compare
GFF4464 +0.4 1.1 Methyltransferase FkbM compare
GFF131 +0.4 1.4 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF463 +0.4 0.7 Transcriptional regulator, GntR family compare
GFF1519 +0.4 1.6 Maebl compare
GFF5381 +0.4 2.2 Maebl compare
GFF1622 +0.4 0.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5635 +0.4 1.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF3816 +0.4 2.0 Aldo-keto reductase compare
GFF4780 +0.4 1.7 Electron transport complex protein RnfB compare
GFF2595 +0.4 1.5 hypothetical protein compare
GFF3174 +0.4 0.5 response regulator, NarL-family compare
GFF95 +0.4 2.0 Probable signal peptide protein compare
GFF458 +0.4 1.2 DGPFAETKE family protein compare
GFF4417 +0.4 0.7 Electron transfer flavoprotein, beta subunit compare
GFF1763 +0.4 2.1 Phosphoglycerate mutase family protein compare
GFF1018 +0.4 2.1 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
GFF4399 +0.4 0.7 Chromosome (plasmid) partitioning protein ParA compare
GFF2299 +0.4 1.3 hypothetical protein compare
GFF677 +0.4 0.8 FIG00433688: hypothetical protein compare
GFF3667 +0.4 2.6 Serine/threonine protein kinase (EC 2.7.11.1) compare
GFF3200 +0.4 1.0 hypothetical protein compare
GFF1446 +0.4 1.2 Flagellin protein FlaA compare
GFF1963 +0.4 1.5 Small-conductance mechanosensitive channel compare
GFF3425 +0.4 2.1 Nucleoside-diphosphate-sugar epimerases compare
GFF3911 +0.4 0.9 hypothetical protein compare
GFF943 +0.4 1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF4456 +0.4 0.6 Two-component system sensory histidine kinase compare
GFF384 +0.4 1.9 Bll5482 protein compare
GFF5034 +0.4 1.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
GFF3453 +0.4 1.0 Conjugative transfer protein TrbB compare
GFF191 +0.4 1.3 Transcriptional regulator ligR, LysR family compare
GFF3820 +0.4 1.9 Adenylate cyclase (EC 4.6.1.1) compare
GFF2700 +0.4 1.6 Transcriptional regulator, AsnC family compare
GFF5074 +0.4 0.7 hypothetical protein compare
GFF5380 +0.4 1.2 Transcriptional activator of acetoin/glycerol metabolism compare
GFF5501 +0.4 0.8 DNA-binding domain of ModE compare
GFF728 +0.4 2.2 DNA polymerase IV (EC 2.7.7.7) compare
GFF5627 +0.4 1.0 Mannose-6-phosphate isomerase compare
GFF4559 +0.4 1.5 Peptide deformylase (EC 3.5.1.88) compare
GFF17 +0.4 0.6 LysR family transcriptional regulator YfeR compare
GFF2536 +0.4 1.7 two-component hybrid sensor and regulator compare
GFF5358 +0.4 1.9 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
GFF726 +0.4 2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF1151 +0.4 1.0 2-Oxobutyrate oxidase, putative compare
GFF737 +0.4 1.9 Autolysin sensor kinase (EC 2.7.3.-) compare
GFF470 +0.4 1.0 FIG00441296: hypothetical protein compare
GFF3442 +0.4 0.9 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF2410 +0.4 0.5 Two-component system response regulator QseB compare
GFF3455 +0.4 1.0 Type IV secretion system protein VirD4 compare
GFF1540 +0.4 1.3 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF1170 +0.4 1.7 DNA repair protein RadC compare
GFF2329 +0.4 2.1 TRAP-type C4-dicarboxylate transport system, large permease component compare
GFF4072 +0.4 0.9 Flagellar basal-body rod protein FlgB compare
GFF2333 +0.4 1.7 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) compare
GFF3776 +0.4 1.2 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF5651 +0.4 0.9 putative phosphotransferase compare
GFF5386 +0.4 1.0 Aldehyde dehydrogenase B (EC 1.2.1.22) compare
GFF4652 +0.4 2.3 Conserved domain protein compare
GFF1790 +0.4 0.9 Heat shock protein HtpX (EC 3.4.24.-) compare
GFF346 +0.4 2.5 Chaperone protein HtpG compare
GFF2404 +0.4 1.3 Tricarboxylate transport protein TctC compare
GFF1386 +0.4 0.6 General secretion pathway protein K compare
GFF1205 +0.4 2.0 Benzaldehyde dehydrogenase compare
GFF3056 +0.3 1.5 MmgE/PrpD family protein compare
GFF4939 +0.3 2.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
GFF2310 +0.3 1.6 putative exported protein compare
GFF1671 +0.3 1.4 Cobalt-zinc-cadmium resistance protein compare
GFF4056 +0.3 1.2 Flagellar motor switch protein FliG compare
GFF5374 +0.3 1.3 Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2) compare
GFF1674 +0.3 1.0 (Y14336) putative extracellular protein containing predicted 35aa signal peptide compare
GFF3010 +0.3 1.0 3-oxoacyl-[ACP] synthase compare
GFF2450 +0.3 2.1 Positive regulator of CheA protein activity (CheW) compare
GFF83 +0.3 1.3 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid compare
GFF4772 +0.3 2.4 Glycine-rich cell wall structural protein precursor compare
GFF176 +0.3 1.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF5744 +0.3 1.3 FIG00931343: hypothetical protein compare
GFF4997 +0.3 1.2 Tricarboxylate transport protein TctC compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_Others16 across organisms