Experiment set1S323 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_Others16 rep B; time point 2

200 most detrimental genes:

  gene name fitness t score description  
GFF4521 +3.4 29.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF4042 +1.3 7.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF831 +1.2 6.6 Heat-inducible transcription repressor HrcA compare
GFF4023 +1.0 2.8 PUTATIVE METHYLTRANSFERASE compare
GFF2877 +1.0 2.8 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
GFF4424 +0.9 1.4 Regulatory protein, LuxR:Tetratricopeptide TPR_4 compare
GFF994 +0.8 2.1 probable hydrolase compare
GFF1335 +0.8 6.8 Type IV pilus biogenesis protein PilO compare
GFF4473 +0.8 1.5 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF4004 +0.7 1.5 LysR family regulatory protein compare
GFF5130 +0.7 1.9 Tricarboxylate transport transcriptional regulator TctD compare
GFF3654 +0.7 1.5 FIG138315: Putative alpha helix protein compare
GFF1336 +0.7 5.0 Type IV pilus biogenesis protein PilN compare
GFF5696 +0.7 1.4 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF189 +0.7 2.7 MFS permease compare
GFF1531 +0.7 2.0 putative exported protein compare
GFF3941 +0.7 1.4 GCN5-related N-acetyltransferase compare
GFF5521 +0.7 1.9 peptidoglycan binding domain protein compare
GFF4601 +0.6 1.6 Phenylacetic acid degradation protein paaI compare
GFF1337 +0.6 5.5 Type IV pilus biogenesis protein PilM compare
GFF4180 +0.6 2.1 Conjugative transfer protein TrbJ compare
GFF3494 +0.6 2.6 hypothetical protein compare
GFF1333 +0.6 4.2 Type IV pilus biogenesis protein PilQ compare
GFF2179 +0.6 1.3 LysR family transcriptional regulator YbhD compare
GFF3402 +0.6 1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF4559 +0.6 1.8 Peptide deformylase (EC 3.5.1.88) compare
GFF1093 +0.6 1.3 Mobile element protein compare
GFF1674 +0.6 1.6 (Y14336) putative extracellular protein containing predicted 35aa signal peptide compare
GFF5621 +0.6 2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
GFF2209 +0.6 1.4 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) compare
GFF3759 +0.6 2.1 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
GFF737 +0.6 3.9 Autolysin sensor kinase (EC 2.7.3.-) compare
GFF513 +0.6 1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2558 +0.6 3.1 hypothetical protein compare
GFF3010 +0.6 1.3 3-oxoacyl-[ACP] synthase compare
GFF1446 +0.6 1.4 Flagellin protein FlaA compare
GFF5323 +0.6 1.2 hypothetical protein compare
GFF3496 +0.6 1.2 Mlr6156 protein compare
GFF4074 +0.5 1.3 Flagellar basal-body rod modification protein FlgD compare
GFF342 +0.5 2.4 transcriptional regulator, Crp/Fnr family compare
GFF5312 +0.5 1.7 hypothetical protein compare
GFF345 +0.5 2.4 FIG00920846: hypothetical protein compare
GFF2462 +0.5 1.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
GFF1409 +0.5 1.5 Flagellar L-ring protein FlgH compare
GFF2021 +0.5 3.1 FIG00977539: hypothetical protein compare
GFF5465 +0.5 2.2 Fumarylacetoacetate hydrolase family protein compare
GFF2739 +0.5 1.1 lipoprotein, putative compare
GFF3178 +0.5 1.6 Death on curing protein, Doc toxin compare
GFF1905 +0.5 0.9 membrane protein, putative compare
GFF738 +0.5 3.7 Autolysis response regulater LytR compare
GFF4157 +0.5 1.8 y4eB gene in pNGR234a homolog compare
GFF1485 +0.5 1.6 Transcriptional regulator, ArsR family compare
GFF2896 +0.5 1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF298 +0.5 2.2 DedD protein compare
GFF87 +0.5 2.5 hypothetical protein compare
GFF2536 +0.5 1.9 two-component hybrid sensor and regulator compare
GFF3085 +0.5 2.2 putative exported protein compare
GFF5410 +0.5 2.9 Bll5684 protein compare
GFF5450 +0.5 1.1 hypothetical protein compare
GFF4610 +0.5 1.4 hypothetical protein compare
GFF3838 +0.5 1.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF2244 +0.5 1.1 putative exported protein compare
GFF2169 +0.4 1.5 Putative fumarylacetoacetate (FAA) hydrolase compare
GFF353 +0.4 1.0 Organic hydroperoxide resistance protein compare
GFF3749 +0.4 1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF2708 +0.4 1.4 Tricarboxylate transport protein TctC compare
GFF3526 +0.4 2.8 Lipid A export ATP-binding/permease protein MsbA compare
GFF2243 +0.4 1.7 Tricarboxylate transport protein TctC compare
GFF5430 +0.4 2.7 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
GFF5630 +0.4 0.8 Transcriptional regulator, AraC family compare
GFF76 +0.4 2.0 hypothetical protein compare
GFF1779 +0.4 0.9 hypothetical protein compare
GFF2410 +0.4 1.0 Two-component system response regulator QseB compare
GFF3615 +0.4 2.1 hypothetical protein compare
GFF5651 +0.4 1.3 putative phosphotransferase compare
GFF1554 +0.4 2.1 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF3280 +0.4 1.2 hypothetical protein compare
GFF519 +0.4 1.9 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
GFF484 +0.4 0.8 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) compare
GFF548 +0.4 1.2 Blr3520 protein homolog, hypothetical protein compare
GFF5358 +0.4 2.4 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
GFF3485 +0.4 1.2 Plasmid replication initiator protein compare
GFF5140 +0.4 2.4 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
GFF4652 +0.4 2.0 Conserved domain protein compare
GFF5374 +0.4 1.7 Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2) compare
GFF3738 +0.4 1.0 hypothetical protein compare
GFF344 +0.4 2.5 Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) compare
GFF1186 +0.4 1.0 General secretion pathway protein N compare
GFF3290 +0.4 1.8 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF2927 +0.4 1.2 hypothetical protein compare
GFF450 +0.4 0.9 PhnB protein compare
GFF2327 +0.4 1.2 TRAP transporter solute receptor, unknown substrate 3 compare
GFF102 +0.4 1.1 Integral membrane protein compare
GFF5705 +0.4 2.8 Transcriptional regulator, GntR family compare
GFF5437 +0.4 1.2 Periplasmic molybdate-binding domain compare
GFF1476 +0.4 2.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
GFF3399 +0.4 0.9 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
GFF463 +0.4 0.7 Transcriptional regulator, GntR family compare
GFF3170 +0.4 0.9 hypothetical protein compare
GFF2041 +0.4 0.8 hypothetical protein compare
GFF462 +0.4 1.6 FIG074102: hypothetical protein compare
GFF2598 +0.4 1.8 Ethanolamine ammonia-lyase light chain (EC 4.3.1.7) compare
GFF1334 +0.4 2.5 Type IV pilus biogenesis protein PilP compare
GFF2428 +0.4 1.3 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF3971 +0.4 1.7 DNA topoisomerase III (EC 5.99.1.2) compare
GFF1700 +0.4 2.2 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
GFF461 +0.4 1.1 Transcriptional regulator, LysR family compare
GFF3817 +0.4 1.1 hypothetical protein compare
GFF5477 +0.4 1.5 Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-) compare
GFF361 +0.4 1.3 ABC, transporter, ATP-binding protein compare
GFF3778 +0.4 1.3 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF2039 +0.4 1.4 hypothetical protein compare
GFF4163 +0.4 1.0 Chromosome (plasmid) partitioning protein ParA compare
GFF790 +0.4 1.3 Probable lipoprotein compare
GFF1185 +0.4 2.2 Heme oxygenase HemO, associated with heme uptake compare
GFF3726 +0.4 1.1 hypothetical protein compare
GFF5392 +0.4 2.4 Bll5287 protein compare
GFF1643 +0.4 1.6 Dihydropyrimidinase (EC 3.5.2.2) compare
GFF5084 +0.4 1.3 Major membrane protein I compare
GFF5377 +0.4 1.9 carbon monoxide dehydrogenase G protein compare
GFF2595 +0.4 1.4 hypothetical protein compare
GFF1932 +0.4 1.0 Bll5738 protein compare
GFF551 +0.4 3.0 FIG00931886: hypothetical protein compare
GFF3174 +0.4 0.9 response regulator, NarL-family compare
GFF2867 +0.4 0.9 hypothetical protein compare
GFF3765 +0.4 1.8 Metal transporter, ZIP family compare
GFF4917 +0.4 2.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
GFF405 +0.4 2.0 hypothetical protein compare
GFF4096 +0.4 1.2 FIG00582348: hypothetical protein compare
GFF1461 +0.4 0.9 Flagellar biosynthesis protein FliP compare
GFF4810 +0.4 1.7 hypothetical protein compare
GFF3455 +0.4 0.8 Type IV secretion system protein VirD4 compare
GFF5074 +0.4 0.7 hypothetical protein compare
GFF1706 +0.4 0.7 YbaK/prolyl-tRNA synthetase associated region compare
GFF32 +0.4 1.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
GFF3425 +0.3 2.1 Nucleoside-diphosphate-sugar epimerases compare
GFF3017 +0.3 1.3 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
GFF5000 +0.3 1.7 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
GFF4065 +0.3 1.4 RNA polymerase sigma factor for flagellar operon compare
GFF933 +0.3 1.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF472 +0.3 1.2 hypothetical protein compare
GFF1237 +0.3 1.6 FIG00932538: hypothetical protein compare
GFF3576 +0.3 2.0 FIG074102: hypothetical protein compare
GFF2572 +0.3 2.6 Uncharacterized protein with LysM domain, COG1652 compare
GFF129 +0.3 1.3 Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8) compare
GFF393 +0.3 3.0 Sensor histidine kinase compare
GFF3506 +0.3 2.4 FIG00464231: hypothetical protein compare
GFF1944 +0.3 1.2 Cyanate hydratase (EC 4.2.1.104) compare
GFF3279 +0.3 0.8 Urea ABC transporter, ATPase protein UrtE compare
GFF3129 +0.3 1.1 Mobile element protein compare
GFF5431 +0.3 0.6 Vitamin B12 ABC transporter, permease component BtuC compare
GFF2813 +0.3 0.8 FIG00761799: membrane protein compare
GFF3522 +0.3 0.7 Sensory histidine kinase QseC compare
GFF1671 +0.3 1.8 Cobalt-zinc-cadmium resistance protein compare
GFF5121 +0.3 1.0 Benzoate transport, ATPase component compare
GFF1609 +0.3 1.4 Regulator of competence-specific genes compare
GFF1236 +0.3 2.1 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
GFF4664 +0.3 2.7 Type IV pilus biogenesis protein PilZ compare
GFF1619 +0.3 1.5 Glutathione S-transferase (EC 2.5.1.18) compare
GFF1551 +0.3 1.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF2255 +0.3 1.6 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF4418 +0.3 1.5 Electron transfer flavoprotein, alpha subunit compare
GFF5438 +0.3 0.5 Nitroreductase family protein compare
GFF4547 +0.3 1.1 putative membrane protein compare
GFF55 +0.3 0.9 EpsI protein compare
GFF511 +0.3 1.9 expressed protein compare
GFF175 +0.3 1.2 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF5069 +0.3 1.4 hypothetical protein compare
GFF2515 +0.3 2.3 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF717 +0.3 1.8 Rubrerythrin compare
GFF191 +0.3 1.1 Transcriptional regulator ligR, LysR family compare
GFF1901 +0.3 1.6 Outer membrane protein A precursor compare
GFF1953 +0.3 1.3 hypothetical protein compare
GFF2966 +0.3 1.7 putative periplasmic protein kinase ArgK and related GTPases of G3E family compare
GFF1041 +0.3 1.2 Aerotaxis sensor receptor protein compare
GFF4166 +0.3 0.7 Type IV secretory pathway, protease TraF compare
GFF1422 +0.3 1.2 Lactoylglutathione lyase and related lyases compare
GFF1591 +0.3 1.5 Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) compare
GFF4119 +0.3 0.5 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
GFF843 +0.3 1.5 FIG005429: hypothetical protein compare
GFF2450 +0.3 2.2 Positive regulator of CheA protein activity (CheW) compare
GFF3364 +0.3 0.9 Transcriptional regulator compare
GFF1459 +0.3 1.4 Flagellar motor switch protein FliN compare
GFF4091 +0.3 0.9 Flagellar biosynthesis protein FliP compare
GFF40 +0.3 1.3 hypothetical protein compare
GFF4464 +0.3 1.0 Methyltransferase FkbM compare
GFF1381 +0.3 1.2 General secretion pathway protein C compare
GFF968 +0.3 1.9 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF394 +0.3 1.7 transcriptional regulator, LuxR family compare
GFF5179 +0.3 1.7 putative membrane protein compare
GFF1994 +0.3 0.7 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
GFF4333 +0.3 2.6 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF3507 +0.3 1.3 VrlR-like protein compare
GFF3274 +0.3 1.9 COG2879, Hypothetical small protein yjiX compare
GFF206 +0.3 2.1 Nucleoside ABC transporter, permease protein 1 compare
GFF1248 +0.3 2.0 Probable transmembrane protein compare
GFF544 +0.3 0.6 hypothetical protein compare
GFF1635 +0.3 1.0 DNA-binding response regulator compare
GFF5386 +0.3 1.0 Aldehyde dehydrogenase B (EC 1.2.1.22) compare
GFF2687 +0.3 1.4 putative exported protein compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_Others16 across organisms