Experiment set1S32 for Pseudomonas sp. DMC3

Compare to:

D-Glucose and Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
GFF3224 -5.7 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
GFF793 -5.7 -5.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
GFF17 -5.6 -5.5 Anthranilate phosphoribosyltransferase compare
GFF18 -5.5 -3.8 Anthranilate synthase component 2 compare
GFF4081 -5.3 -3.7 DNA-binding transcriptional regulator NtrC compare
GFF4080 -5.2 -3.6 Sensory histidine kinase/phosphatase NtrB compare
GFF16 -5.1 -4.9 Indole-3-glycerol phosphate synthase compare
GFF264 -5.0 -8.4 Phosphoenolpyruvate-dependent phosphotransferase system compare
GFF246 -5.0 -5.9 Dihydroxy-acid dehydratase compare
GFF3693 -4.8 -6.6 hypothetical protein compare
GFF1841 -4.8 -5.7 ATP phosphoribosyltransferase compare
GFF1604 -4.8 -8.6 putative branched-chain-amino-acid aminotransferase compare
GFF212 -4.7 -9.5 Homoserine O-succinyltransferase compare
GFF3102 -4.6 -13.3 Glutamate synthase [NADPH] large chain compare
GFF213 -4.6 -6.3 Bifunctional methionine biosynthesis protein MetXA/MetW compare
GFF798 -4.6 -6.2 Amidophosphoribosyltransferase compare
GFF4095 -4.6 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
GFF1842 -4.5 -10.5 Histidinol dehydrogenase compare
GFF20 -4.5 -10.8 Anthranilate synthase component 1 compare
GFF3103 -4.4 -6.7 Glutamate synthase [NADPH] small chain compare
GFF301 -4.4 -5.2 Amino-acid acetyltransferase compare
GFF4099 -4.4 -8.8 Histidine biosynthesis bifunctional protein HisB compare
GFF1304 -4.4 -10.5 Transaldolase B compare
GFF2677 -4.3 -4.1 Phosphoadenosine phosphosulfate reductase compare
GFF407 -4.2 -5.0 Acetylglutamate kinase compare
GFF785 -4.2 -5.8 3-isopropylmalate dehydratase large subunit compare
GFF3196 -4.2 -5.7 Phosphoserine phosphatase SerB2 compare
GFF799 -4.2 -7.4 O-succinylhomoserine sulfhydrylase compare
GFF359 -4.1 -5.6 Argininosuccinate lyase compare
GFF4098 -4.1 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
GFF5 -4.1 -6.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
GFF5092 -4.1 -7.3 Argininosuccinate synthase compare
GFF2051 -4.1 -10.8 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF44 -3.9 -2.7 Multifunctional CCA protein compare
GFF4096 -3.9 -5.3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase compare
GFF676 -3.9 -5.3 Tryptophan synthase beta chain compare
GFF788 -3.8 -8.1 3-isopropylmalate dehydrogenase compare
GFF4052 -3.8 -8.9 Ketol-acid reductoisomerase (NADP(+)) compare
GFF3308 -3.8 -5.8 Bifunctional purine biosynthesis protein PurH compare
GFF786 -3.8 -5.1 3-isopropylmalate dehydratase small subunit 1 compare
GFF5102 -3.7 -14.4 Ornithine carbamoyltransferase 1, anabolic compare
GFF1535 -3.7 -6.6 Siroheme synthase compare
GFF171 -3.7 -3.6 5,10-methylenetetrahydrofolate reductase compare
GFF677 -3.6 -4.3 Tryptophan synthase alpha chain compare
GFF5246 -3.6 -3.5 Assimilatory nitrite reductase [NAD(P)H] small subunit compare
GFF5247 -3.5 -14.4 Nitrite reductase [NAD(P)H] compare
GFF2289 -3.5 -2.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
GFF3307 -3.5 -2.4 Phosphoribosylamine--glycine ligase compare
GFF1962 -3.5 -4.8 Phosphoribosylformylglycinamidine synthase compare
GFF508 -3.5 -10.9 HTH-type transcriptional activator CmpR compare
GFF507 -3.5 -11.3 2-oxoglutarate carboxylase small subunit compare
GFF506 -3.3 -13.0 Oxaloacetate decarboxylase alpha chain compare
GFF3166 -3.3 -2.3 D-inositol-3-phosphate glycosyltransferase compare
GFF2539 -3.3 -6.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
GFF4878 -3.2 -9.7 Arginine N-succinyltransferase subunit alpha compare
GFF4050 -3.2 -5.3 Acetolactate synthase isozyme 3 large subunit compare
GFF485 -3.1 -3.0 N5-carboxyaminoimidazole ribonucleotide synthase compare
GFF3692 -3.1 -9.3 Sulfite reductase [ferredoxin] compare
GFF5250 -3.1 -7.7 putative transcriptional regulatory protein pdtaR compare
GFF4818 -3.1 -9.8 GTP pyrophosphokinase compare
GFF4025 -3.1 -5.9 Glucose-6-phosphate isomerase compare
GFF1927 -3.1 -2.4 Molybdopterin synthase catalytic subunit compare
GFF274 -3.1 -6.4 D-3-phosphoglycerate dehydrogenase compare
GFF4575 -3.0 -3.6 Molybdenum cofactor guanylyltransferase compare
GFF5139 -3.0 -3.6 6-phosphogluconolactonase compare
GFF2282 -3.0 -2.1 Sulfur carrier protein TusA compare
GFF2161 -2.9 -2.0 ATP-dependent DNA helicase DinG compare
GFF4573 -2.8 -8.5 Molybdopterin molybdenumtransferase compare
GFF3072 -2.8 -4.3 Phosphoribosyl-ATP pyrophosphatase compare
GFF3073 -2.8 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
GFF5243 -2.8 -3.7 Outer membrane porin F compare
GFF4148 -2.7 -7.7 Inner membrane protein YgaZ compare
GFF5245 -2.7 -11.0 Nitrate reductase compare
GFF4051 -2.4 -8.3 Acetolactate synthase isozyme 3 small subunit compare
GFF420 -2.4 -5.4 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF4914 -2.4 -1.6 RecBCD enzyme subunit RecD compare
GFF4332 -2.3 -5.3 2-isopropylmalate synthase compare
GFF5249 -2.3 -7.8 Nitrate transporter compare
GFF1848 -2.3 -8.3 Sulfate adenylyltransferase subunit 2 compare
GFF411 -2.3 -2.2 Orotate phosphoribosyltransferase compare
GFF4820 -2.2 -7.0 Cysteine synthase B compare
GFF4147 -2.2 -4.1 hypothetical protein compare
GFF4489 -2.2 -3.3 Molybdopterin-synthase adenylyltransferase compare
GFF4913 -2.2 -3.5 RecBCD enzyme subunit RecB compare
GFF266 -2.1 -9.1 putative phosphatase compare
GFF2111 -2.1 -3.1 Protein RecA compare
GFF4287 -2.1 -7.5 hypothetical protein compare
GFF4186 -2.0 -3.6 Glutamate--cysteine ligase compare
GFF4034 -2.0 -5.0 RNA polymerase-binding transcription factor DksA compare
GFF2635 -2.0 -2.6 Enolase-phosphatase E1 compare
GFF2538 -1.9 -6.0 Phosphoribosylglycinamide formyltransferase compare
GFF3169 -1.9 -5.4 hypothetical protein compare
GFF5251 -1.8 -5.0 Nitrate/nitrite binding protein NrtA compare
GFF2471 -1.8 -2.9 Flagellum site-determining protein YlxH compare
GFF3171 -1.8 -1.8 D-inositol-3-phosphate glycosyltransferase compare
GFF5152 -1.7 -7.3 Phosphogluconate dehydratase compare
GFF1849 -1.7 -8.3 Bifunctional enzyme CysN/CysC compare
GFF481 -1.7 -2.9 putative acyl-CoA thioester hydrolase compare
GFF2454 -1.7 -7.4 STAS-domain containing protein compare
GFF5214 -1.7 -2.4 hypothetical protein compare
GFF1443 -1.7 -4.2 ATP-dependent Clp protease proteolytic subunit compare
GFF1444 -1.6 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1824 -1.6 -1.8 Phosphocarrier protein NPr compare
GFF2295 -1.6 -1.6 hypothetical protein compare
GFF5140 -1.6 -5.1 Glucose-6-phosphate 1-dehydrogenase compare
GFF4030 -1.6 -4.2 Transcriptional regulatory protein ZraR compare
GFF4617 -1.5 -6.7 HTH-type transcriptional regulator CysB compare
GFF37 -1.5 -3.0 Ribosomal RNA small subunit methyltransferase A compare
GFF1925 -1.5 -2.2 Cyclic pyranopterin monophosphate synthase compare
GFF2012 -1.5 -4.3 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF4126 -1.5 -4.0 ATP-dependent zinc metalloprotease FtsH compare
GFF1651 -1.4 -4.1 Sensor histidine kinase RcsC compare
GFF5186 -1.4 -3.0 Crossover junction endodeoxyribonuclease RuvC compare
GFF4443 -1.4 -4.3 Cell division protein ZapE compare
GFF4565 -1.4 -2.1 Pyrimidine/purine nucleoside phosphorylase compare
GFF361 -1.4 -1.5 hypothetical protein compare
GFF4877 -1.4 -3.9 Arginine N-succinyltransferase subunit beta compare
GFF4660 -1.3 -4.7 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
GFF5244 -1.3 -5.5 Uroporphyrinogen-III C-methyltransferase compare
GFF4336 -1.3 -2.1 Outer membrane protein assembly factor BamB compare
GFF293 -1.3 -1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
GFF136 -1.3 -1.4 HTH-type transcriptional regulator BetI compare
GFF200 -1.3 -2.6 hypothetical protein compare
GFF2801 -1.3 -3.0 HTH-type transcriptional regulator DmlR compare
GFF3860 -1.3 -2.9 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase compare
GFF1813 -1.3 -3.7 Ribonuclease G compare
GFF4898 -1.3 -1.4 hypothetical protein compare
GFF268 -1.2 -7.1 L-threonine dehydratase biosynthetic IlvA compare
GFF2957 -1.2 -4.9 Molybdate-binding protein ModA compare
GFF39 -1.2 -3.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF2729 -1.2 -2.1 hypothetical protein compare
GFF4978 -1.2 -2.4 Transcription elongation factor GreA compare
GFF4265 -1.2 -1.7 hypothetical protein compare
GFF2642 -1.2 -3.2 Polyamine aminopropyltransferase compare
GFF3092 -1.2 -5.9 NADP-dependent malic enzyme compare
GFF773 -1.2 -5.1 Aromatic-amino-acid aminotransferase compare
GFF4103 -1.2 -1.6 putative Fe(2+)-trafficking protein compare
GFF3530 -1.2 -1.5 hypothetical protein compare
GFF2287 -1.1 -3.6 Outer membrane protein assembly factor BamC compare
GFF915 -1.1 -2.3 Integration host factor subunit alpha compare
GFF2248 -1.1 -1.4 hypothetical protein compare
GFF5192 -1.1 -3.5 hypothetical protein compare
GFF3282 -1.1 -2.9 Urease accessory protein UreD compare
GFF3977 -1.1 -1.6 hypothetical protein compare
GFF713 -1.1 -6.5 Oxygen-independent coproporphyrinogen III oxidase compare
GFF2945 -1.1 -5.4 UTP--glucose-1-phosphate uridylyltransferase compare
GFF4957 -1.1 -1.5 hypothetical protein compare
GFF241 -1.1 -2.6 Putative cysteine protease YraA compare
GFF4912 -1.1 -4.5 RecBCD enzyme subunit RecC compare
GFF1275 -1.1 -5.3 hypothetical protein compare
GFF885 -1.1 -2.0 SOS response-associated protein YedK compare
GFF265 -1.0 -3.5 RNA pyrophosphohydrolase compare
GFF3045 -1.0 -2.3 HTH-type transcriptional repressor NanR compare
GFF1530 -1.0 -2.8 DNA translocase FtsK compare
GFF3356 -1.0 -3.8 Copper-exporting P-type ATPase compare
GFF3826 -1.0 -1.7 Transcriptional repressor NrdR compare
GFF335 -1.0 -3.3 Exopolyphosphatase compare
GFF250 -1.0 -1.3 putative membrane protein compare
GFF4621 -1.0 -1.8 hypothetical protein compare
GFF5035 -0.9 -2.2 hypothetical protein compare
GFF3553 -0.9 -1.2 Transcriptional regulatory protein WalR compare
GFF2299 -0.9 -1.2 hypothetical protein compare
GFF374 -0.9 -3.6 Ammonia channel compare
GFF568 -0.9 -1.3 Ribosomal RNA small subunit methyltransferase G compare
GFF3084 -0.9 -2.7 hypothetical protein compare
GFF3306 -0.9 -4.5 Sensor histidine kinase RcsC compare
GFF2966 -0.9 -1.8 hypothetical protein compare
GFF3687 -0.9 -4.6 Methionine synthase compare
GFF4394 -0.9 -1.6 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
GFF3127 -0.9 -1.9 Acyl carrier protein compare
GFF4146 -0.9 -2.9 hypothetical protein compare
GFF3993 -0.9 -2.6 hypothetical protein compare
GFF1482 -0.8 -2.0 hypothetical protein compare
GFF2619 -0.8 -3.2 hypothetical protein compare
GFF4468 -0.8 -2.0 hypothetical protein compare
GFF2750 -0.8 -1.5 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
GFF3927 -0.8 -1.0 Acetyltransferase compare
GFF3078 -0.8 -2.4 hypothetical protein compare
GFF5104 -0.8 -1.0 Trans-2,3-dihydro-3-hydroxyanthranilate isomerase compare
GFF4574 -0.8 -1.0 Molybdenum cofactor biosynthesis protein B compare
GFF2125 -0.8 -3.2 Peptidyl-lysine N-acetyltransferase YjaB compare
GFF1502 -0.8 -1.7 NADH-quinone oxidoreductase subunit L compare
GFF1633 -0.8 -1.6 hypothetical protein compare
GFF336 -0.8 -5.8 Polyphosphate kinase compare
GFF692 -0.8 -1.2 HTH-type transcriptional repressor RspR compare
GFF320 -0.8 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
GFF1839 -0.8 -1.2 putative protein compare
GFF4576 -0.8 -1.4 hypothetical protein compare
GFF3904 -0.8 -1.7 Thiamine-phosphate synthase compare
GFF471 -0.8 -4.2 Phosphate regulon sensor protein PhoR compare
GFF4091 -0.8 -2.9 Carboxy-terminal processing protease CtpB compare
GFF1195 -0.8 -2.0 hypothetical protein compare
GFF4759 -0.7 -3.4 Phosphate acyltransferase compare
GFF3257 -0.7 -3.3 Sulfoacetaldehyde reductase compare
GFF332 -0.7 -2.4 L-cystine transport system permease protein YecS compare
GFF709 -0.7 -1.9 Acyl-CoA dehydrogenase compare
GFF3571 -0.7 -2.3 UDP-glucose 6-dehydrogenase compare
GFF4250 -0.7 -2.3 hypothetical protein compare
GFF3341 -0.7 -1.9 hypothetical protein compare
GFF5184 -0.7 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source D-Glucose across organisms