Experiment set1S312 for Bacteroides ovatus ATCC 8483
Hyaluronic acid sodium salt from Streptococcus equi 2.5 mg/mL carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Hyaluronic acid sodium salt from Streptococcus equi (2.5 mg/mL)
Culturing: Bovatus_ATCC8483_ML6, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/30/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 17 genes in this experiment
For carbon source Hyaluronic acid sodium salt from Streptococcus equi across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Colanic acid biosynthesis | 2 |
| Glycerol and Glycerol-3-phosphate Uptake and Utilization | 1 |
| Iron acquisition in Vibrio | 1 |
| Lactate utilization | 1 |
| Ton and Tol transport systems | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| phosphatidylcholine resynthesis via glycerophosphocholine | 2 | 1 | 1 |
| glycerophosphodiester degradation | 2 | 1 | 1 |
| phospholipid remodeling (phosphatidylethanolamine, yeast) | 4 | 1 | 1 |
| glycerol and glycerophosphodiester degradation | 4 | 1 | 1 |
| anandamide biosynthesis I | 12 | 2 | 1 |