Experiment set1S31 for Pseudomonas sp. DMC3

Compare to:

D-Glucose and Sodium D,L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
GFF723 +1.2 3.4 hypothetical protein compare
GFF714 +1.1 2.9 hypothetical protein compare
GFF2452 +1.1 8.1 Flagellum-specific ATP synthase compare
GFF2450 +1.1 6.5 Flagellar motor switch protein FliG compare
GFF4849 +1.0 3.7 Flagellar basal-body rod protein FlgC compare
GFF2419 +1.0 2.9 Flagellar P-ring protein compare
GFF2451 +1.0 6.1 hypothetical protein compare
GFF2416 +0.9 4.3 Flagellar basal-body rod protein FlgF compare
GFF1777 +0.9 1.7 hypothetical protein compare
GFF1079 +0.9 1.6 hypothetical protein compare
GFF1500 +0.9 2.8 NADH-quinone oxidoreductase subunit N compare
GFF3466 +0.9 1.9 hypothetical protein compare
GFF2472 +0.9 6.5 RNA polymerase sigma factor FliA compare
GFF2453 +0.9 4.8 hypothetical protein compare
GFF2449 +0.9 6.4 Flagellar M-ring protein compare
GFF2463 +0.9 5.7 Flagellar biosynthetic protein FliP compare
GFF1793 +0.9 2.1 Sensor histidine kinase RegB compare
GFF136 +0.9 2.1 HTH-type transcriptional regulator BetI compare
GFF926 +0.8 3.4 2-haloacrylate reductase compare
GFF2465 +0.8 3.9 Flagellar biosynthetic protein FliR compare
GFF1134 +0.8 1.8 IS5 family transposase IS4811 compare
GFF1511 +0.8 2.3 NADH-quinone oxidoreductase subunit B compare
GFF2464 +0.8 4.7 Flagellar biosynthetic protein FliQ compare
GFF4437 +0.8 2.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
GFF2418 +0.8 5.0 Flagellar L-ring protein compare
GFF1974 +0.8 2.5 Protein YrdA compare
GFF2420 +0.8 3.9 hypothetical protein compare
GFF3568 +0.8 1.1 hypothetical protein compare
GFF2482 +0.8 3.7 hypothetical protein compare
GFF4855 +0.8 2.6 hypothetical protein compare
GFF3244 +0.7 2.3 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase compare
GFF716 +0.7 1.9 putative copper-importing P-type ATPase A compare
GFF2466 +0.7 4.0 Flagellar biosynthetic protein FlhB compare
GFF3744 +0.7 2.4 hypothetical protein compare
GFF2469 +0.7 5.3 Flagellar biosynthesis protein FlhA compare
GFF989 +0.7 3.5 hypothetical protein compare
GFF2448 +0.7 3.9 Flagellar hook-basal body complex protein FliE compare
GFF1214 +0.7 2.0 Inner membrane protein YqjF compare
GFF4847 +0.7 6.2 Flagellar hook protein FlgE compare
GFF2422 +0.7 4.9 hypothetical protein compare
GFF209 +0.7 2.4 Pyridoxal phosphate homeostasis protein compare
GFF2348 +0.7 2.1 Peptidyl-prolyl cis-trans isomerase A compare
GFF2421 +0.7 5.1 hypothetical protein compare
GFF2033 +0.7 3.3 Multidrug resistance protein MdtA compare
GFF4881 +0.7 4.0 HTH-type transcriptional regulator CdhR compare
GFF2625 +0.7 0.9 putative DNA endonuclease SmrA compare
GFF5240 +0.7 2.2 hypothetical protein compare
GFF2279 +0.7 3.4 Sigma factor AlgU regulatory protein MucB compare
GFF2445 +0.7 5.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
GFF2461 +0.7 2.8 Flagellar motor switch protein FliN compare
GFF4639 +0.7 2.6 hypothetical protein compare
GFF4401 +0.7 1.2 hypothetical protein compare
GFF628 +0.7 2.3 Cytochrome c4 compare
GFF428 +0.7 4.0 hypothetical protein compare
GFF2299 +0.7 0.9 hypothetical protein compare
GFF1265 +0.7 2.1 hypothetical protein compare
GFF997 +0.7 0.9 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A compare
GFF2460 +0.6 4.1 Flagellar motor switch protein FliM compare
GFF778 +0.6 2.4 hypothetical protein compare
GFF1759 +0.6 1.7 Glycine cleavage system transcriptional activator compare
GFF3876 +0.6 1.9 Gamma-glutamyl phosphate reductase compare
GFF3592 +0.6 1.5 hypothetical protein compare
GFF2423 +0.6 5.3 hypothetical protein compare
GFF2457 +0.6 4.3 hypothetical protein compare
GFF2413 +0.6 0.9 Putative pterin-4-alpha-carbinolamine dehydratase compare
GFF998 +0.6 1.8 HTH-type transcriptional regulator CynR compare
GFF2544 +0.6 1.2 hypothetical protein compare
GFF1773 +0.6 1.8 hypothetical protein compare
GFF3630 +0.6 2.3 hypothetical protein compare
GFF5238 +0.6 2.2 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
GFF1730 +0.6 1.6 hypothetical protein compare
GFF2440 +0.6 4.3 Flagellin compare
GFF3691 +0.6 1.2 hypothetical protein compare
GFF3511 +0.6 1.7 hypothetical protein compare
GFF612 +0.6 2.3 hypothetical protein compare
GFF1776 +0.6 2.5 hypothetical protein compare
GFF729 +0.6 3.7 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
GFF3056 +0.6 1.1 putative siderophore transport system permease protein YfhA compare
GFF1510 +0.6 2.2 NADH-quinone oxidoreductase subunit C/D compare
GFF4088 +0.6 1.7 putative protein YibN compare
GFF4902 +0.6 3.0 CTP synthase compare
GFF965 +0.5 2.7 HTH-type transcriptional activator RhaR compare
GFF1457 +0.5 1.6 HTH-type transcriptional activator CmpR compare
GFF3922 +0.5 0.9 DNA polymerase III PolC-type compare
GFF319 +0.5 1.5 Cell division protein ZapA compare
GFF907 +0.5 1.6 Cold shock protein CapB compare
GFF4340 +0.5 1.4 Cytoskeleton protein RodZ compare
GFF2839 +0.5 1.8 Inner membrane protein YohC compare
GFF1234 +0.5 1.6 hypothetical protein compare
GFF1045 +0.5 1.3 Galactose 1-dehydrogenase compare
GFF1617 +0.5 3.0 6-deoxy-6-sulfogluconolactonase compare
GFF1068 +0.5 1.0 Cysteine/O-acetylserine efflux protein compare
GFF2427 +0.5 3.2 hypothetical protein compare
GFF1378 +0.5 1.5 Mycocerosic acid synthase compare
GFF5080 +0.5 2.0 3-oxoacyl-[acyl-carrier-protein] reductase compare
GFF726 +0.5 2.2 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
GFF4850 +0.5 2.6 Flagellar basal body rod protein FlgB compare
GFF4403 +0.5 1.0 hypothetical protein compare
GFF2431 +0.5 4.2 hypothetical protein compare
GFF409 +0.5 1.5 hypothetical protein compare
GFF4676 +0.5 1.5 Histidinol-phosphate aminotransferase compare
GFF31 +0.5 1.5 Co-chaperone protein DjlA compare
GFF2915 +0.5 1.9 Sensor protein RstB compare
GFF2094 +0.5 1.9 hypothetical protein compare
GFF4796 +0.5 1.3 hypothetical protein compare
GFF123 +0.5 1.5 HTH-type transcriptional regulator CdhR compare
GFF2950 +0.5 1.9 hypothetical protein compare
GFF2343 +0.5 2.0 ECF RNA polymerase sigma-E factor compare
GFF3558 +0.5 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF4531 +0.5 1.8 hypothetical protein compare
GFF2669 +0.5 2.0 hypothetical protein compare
GFF3661 +0.5 2.3 Twitching mobility protein compare
GFF838 +0.5 1.5 hypothetical protein compare
GFF4615 +0.5 1.4 hypothetical protein compare
GFF1359 +0.5 2.5 Cytosine deaminase compare
GFF358 +0.5 3.2 Sensory transduction protein LytR compare
GFF2705 +0.5 1.4 hypothetical protein compare
GFF477 +0.5 2.6 hypothetical protein compare
GFF983 +0.5 1.3 Carboxypeptidase G2 compare
GFF3467 +0.5 3.2 hypothetical protein compare
GFF4832 +0.5 1.9 hypothetical protein compare
GFF1106 +0.5 1.8 hypothetical protein compare
GFF2426 +0.5 1.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
GFF2992 +0.5 1.3 Type II secretion system protein K compare
GFF4286 +0.5 3.1 hypothetical protein compare
GFF2663 +0.5 1.7 hypothetical protein compare
GFF147 +0.5 1.5 hypothetical protein compare
GFF519 +0.5 1.6 Zinc-binding GTPase YeiR compare
GFF5093 +0.5 2.9 Peptidoglycan-associated lipoprotein compare
GFF2867 +0.5 2.0 hypothetical protein compare
GFF3537 +0.5 1.8 hypothetical protein compare
GFF4848 +0.5 3.6 Basal-body rod modification protein FlgD compare
GFF2429 +0.5 2.8 hypothetical protein compare
GFF3195 +0.5 1.9 hypothetical protein compare
GFF4212 +0.5 1.6 Macrolide export protein MacA compare
GFF2926 +0.5 1.1 2-dehydro-3-deoxygluconokinase compare
GFF5259 +0.5 1.3 hypothetical protein compare
GFF2430 +0.5 2.9 Rhamnosyl O-methyltransferase compare
GFF4644 +0.5 1.4 Potassium-transporting ATPase KdpC subunit compare
GFF3603 +0.5 2.1 Transcriptional regulatory protein QseB compare
GFF3640 +0.4 1.2 hypothetical protein compare
GFF4671 +0.4 1.1 Integration host factor subunit beta compare
GFF4242 +0.4 0.9 hypothetical protein compare
GFF4907 +0.4 2.3 Zinc transport protein ZntB compare
GFF361 +0.4 0.7 hypothetical protein compare
GFF281 +0.4 1.5 hypothetical protein compare
GFF469 +0.4 2.5 hypothetical protein compare
GFF4224 +0.4 1.7 Tol-Pal system protein TolQ compare
GFF4872 +0.4 1.0 6,7-dimethyl-8-ribityllumazine synthase compare
GFF2474 +0.4 1.1 Protein phosphatase CheZ compare
GFF14 +0.4 1.3 Cyclic AMP receptor-like protein compare
GFF3470 +0.4 0.6 hypothetical protein compare
GFF2425 +0.4 1.4 CDP-glucose 4,6-dehydratase compare
GFF4281 +0.4 3.3 Type I secretion system membrane fusion protein PrsE compare
GFF3317 +0.4 2.1 Methyl-accepting chemotaxis protein CtpL compare
GFF3503 +0.4 2.2 putative oxidoreductase YgfF compare
GFF901 +0.4 1.4 Ribokinase compare
GFF57 +0.4 3.1 hypothetical protein compare
GFF3364 +0.4 1.0 hypothetical protein compare
GFF4432 +0.4 1.4 hypothetical protein compare
GFF2543 +0.4 1.9 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase compare
GFF1306 +0.4 0.8 putative low molecular weight protein-tyrosine-phosphatase AmsI compare
GFF4571 +0.4 2.5 putative lipid kinase YegS compare
GFF3569 +0.4 1.2 hypothetical protein compare
GFF728 +0.4 1.8 hypothetical protein compare
GFF4243 +0.4 1.0 5-hydroxyisourate hydrolase compare
GFF1175 +0.4 2.1 HTH-type transcriptional regulator DmlR compare
GFF4865 +0.4 2.1 hypothetical protein compare
GFF844 +0.4 1.8 hypothetical protein compare
GFF4853 +0.4 0.9 hypothetical protein compare
GFF4748 +0.4 2.6 hypothetical protein compare
GFF3110 +0.4 0.9 hypothetical protein compare
GFF643 +0.4 1.9 hypothetical protein compare
GFF4732 +0.4 0.8 hypothetical protein compare
GFF2128 +0.4 1.3 hypothetical protein compare
GFF4094 +0.4 2.3 hypothetical protein compare
GFF2870 +0.4 2.8 hypothetical protein compare
GFF4216 +0.4 1.0 Glutamine transport ATP-binding protein GlnQ compare
GFF3101 +0.4 2.7 Cell division protein DamX compare
GFF3609 +0.4 2.1 Anaerobic regulatory protein compare
GFF710 +0.4 1.6 Adenine phosphoribosyltransferase compare
GFF1358 +0.4 1.0 Diaminopimelate epimerase compare
GFF4980 +0.4 0.9 RNA-binding protein compare
GFF2442 +0.4 2.8 B-type flagellar hook-associated protein 2 compare
GFF487 +0.4 2.1 HTH-type transcriptional regulator YjiE compare
GFF3478 +0.4 1.2 hypothetical protein compare
GFF3517 +0.4 1.6 hypothetical protein compare
GFF1119 +0.4 1.4 hypothetical protein compare
GFF2557 +0.4 1.0 hypothetical protein compare
GFF1181 +0.4 1.6 hypothetical protein compare
GFF1388 +0.4 1.2 Delta-aminolevulinic acid dehydratase compare
GFF4670 +0.4 1.4 hypothetical protein compare
GFF1453 +0.4 1.4 hypothetical protein compare
GFF2259 +0.4 1.2 hypothetical protein compare
GFF1064 +0.4 2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
GFF4284 +0.4 3.5 hypothetical protein compare
GFF1323 +0.4 1.6 hypothetical protein compare
GFF1165 +0.4 1.6 Pyrethroid hydrolase compare
GFF4218 +0.4 2.4 Glutamine transport system permease protein GlnP compare
GFF2022 +0.4 2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source D-Glucose across organisms